UHGV-0103224 (vOTU-074400)

Viral Genome: UHGV-0103224

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0103224
vOTU ID	vOTU-074400
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_213179
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.67 (High-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9814
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.89
Jumbo phage	No

Genome content
Genome length (bp)	41,695
GC content	54.22%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	70
CDS density	92%
Average CDS length (bps)	545.31
Total tRNA genes	4
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 98.67)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0103224_1	411483.FAEPRAA2165_00757	89.7	5.27e-20	N/A	N/A
PHROG	UHGV-0103224_2	phrog_15303	122.9	1.2e-36	N/A	unknown function
KOfam	UHGV-0103224_4	K07273	166.3	0	acm; lysozyme	N/A
PHROG	UHGV-0103224_4	phrog_291	125.6	4.5e-37	endolysin	lysis
UniRef90	UHGV-0103224_4	UniRef90_A0A564U0D3	336.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0103224_4	718252.FP2_04890	211.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0103224_4	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0103224_4	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0103224_4	PF01183,NF003812,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0103224_5	phrog_2310	61.0	1.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-0103224_6	657322.FPR_13530	63.9	0.00000003	domain, Protein	N/A
COG	UHGV-0103224_6	COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-0103224_7	phrog_3558	220.0	0	tail protein	tail
UniRef90	UHGV-0103224_7	UniRef90_UPI001C01D15B	159.0	3.78e-38	phage tail protein	N/A
eggNOG-mapper	UHGV-0103224_7	1235799.C818_04233	102.0	3e-20	Prophage endopeptidase tail	N/A
Pfam	UHGV-0103224_7	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0103224_7	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0103224_7	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0103224_8	phrog_33	40.6	0.00000000005	distal tail protein Dit	tail
eggNOG-mapper	UHGV-0103224_8	1235792.C808_00094	109.0	3.24e-26	phage tail	N/A
COG	UHGV-0103224_8	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0103224_8	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0103224_9	phrog_9959	96.8	1.4e-28	tail length tape measure protein	tail
UniRef90	UHGV-0103224_9	UniRef90_A0A6N7TLD3	1093.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0103224_9	411470.RUMGNA_02228	130.0	1.32e-28	tape measure	N/A
Pfam	UHGV-0103224_9	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0103224_9	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0103224_9	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0103224_9	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0103224_12	phrog_885	58.6	8.9e-17	major tail protein	tail
eggNOG-mapper	UHGV-0103224_12	1111121.HMPREF1247_0789	114.0	5.05e-29	N/A	N/A
structural_annotation	UHGV-0103224_12	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0103224_13	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0103224_14	phrog_17977	42.4	0.00000000001	N/A	unknown function
UniRef90	UHGV-0103224_14	UniRef90_A0A844DHJ8	117.0	9.35e-32	Phage head closure protein	N/A
structural_annotation	UHGV-0103224_14	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0103224_16	phrog_544	147.1	1.20512e-43	major head protein	head and packaging
UniRef90	UHGV-0103224_16	UniRef90_R0BKA1	432.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0103224_16	476272.RUMHYD_01776	327.0	0	N/A	N/A
structural_annotation	UHGV-0103224_16	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0103224_17	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0103224_19	phrog_5	53.8	0.0000000000000051	tail completion or Neck1 protein	connector
UniRef90	UHGV-0103224_19	UniRef90_A0A6N7TNP6	279.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0103224_19	929506.CbC4_1219	94.4	1.33e-22	N/A	N/A
Pfam	UHGV-0103224_19	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0103224_19	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0103224_19	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0103224_21	phrog_2468	82.2	4.6e-24	head morphogenesis	head and packaging
UniRef90	UHGV-0103224_21	UniRef90_A0A6N7TLR7	632.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0103224_21	1504822.CCNO01000013_gene286	119.0	6.46e-27	cell adhesion	N/A
Pfam	UHGV-0103224_21	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0103224_21	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0103224_21	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0103224_22	phrog_64	123.0	1.4e-36	portal protein	head and packaging
UniRef90	UHGV-0103224_22	UniRef90_A0A6N7TNT3	813.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0103224_22	1042156.CXIVA_01850	82.8	0.0000000000000445	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0103224_22	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0103224_22	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0103224_23	K06909	136.8	2.2e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0103224_23	phrog_10250	171.7	0	N/A	unknown function
UniRef90	UHGV-0103224_23	UniRef90_A0A844D8I4	838.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0103224_23	411490.ANACAC_00783	484.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0103224_23	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0103224_23	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0103224_23	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0103224_23	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0103224_23	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0103224_24	UniRef90_UPI0018CC2891	107.0	8.65e-27	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0103224_24	1235790.C805_00037	102.0	1.07e-25	N/A	N/A
structural_annotation	UHGV-0103224_24	PF04218	N/A	N/A	N/A	N/A
PHROG	UHGV-0103224_26	phrog_36	43.0	0.000000000008	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0103224_26	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0103224_28	K01160	59.9	8.5e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0103224_28	phrog_34	57.9	2.3e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0103224_28	UniRef90_A0A6N7TND6	205.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0103224_28	525919.Apre_0813	128.0	1.37e-36	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0103224_28	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0103224_28	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0103224_28	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0103224_29	phrog_424	90.3	2.2e-26	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0103224_29	445972.ANACOL_01819	441.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
COG	UHGV-0103224_29	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0103224_29	PF01507,MF_00064,TIGR00434,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0103224_30	phrog_757	180.3	0	DNA methyltransferase	other
UniRef90	UHGV-0103224_30	UniRef90_A0A417JTT5	306.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0103224_30	1095750.HMPREF9970_0173	226.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0103224_30	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0103224_30	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
UniRef90	UHGV-0103224_32	UniRef90_A0A417H740	98.6	3.77e-23	N/A	N/A
structural_annotation	UHGV-0103224_33	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0103224_34	phrog_15768	122.9	3.2e-36	N/A	unknown function
UniRef90	UHGV-0103224_34	UniRef90_A0A844D5V0	201.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0103224_34	748224.HMPREF9436_03357	139.0	6.69e-38	N/A	N/A
Pfam	UHGV-0103224_34	PF19808	N/A	N/A	N/A	DUF6291
KOfam	UHGV-0103224_35	K03111	132.5	5.2e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0103224_35	phrog_44	141.0	7.60064e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0103224_35	UniRef90_D4K451	218.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0103224_35	718252.FP2_06770	218.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0103224_35	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0103224_35	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0103224_35	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0103224_35	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0103224_35	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0103224_36	phrog_561	125.4	5.3e-37	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0103224_36	UniRef90_A0A1G8PW75	149.0	7.01994e-41	RecT family protein	N/A
eggNOG-mapper	UHGV-0103224_36	563192.HMPREF0179_00147	153.0	1.40971e-42	N/A	N/A
structural_annotation	UHGV-0103224_36	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0103224_38	PF14120	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0103224_39	PF09537	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0103224_40	PF12270,NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0103224_41	PF10743,NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-0103224_43	phrog_4433	118.5	0	N/A	unknown function
UniRef90	UHGV-0103224_43	UniRef90_A0A6M5C839	91.7	1.59e-19	Putative ADP-ribosyltransferase	N/A
eggNOG-mapper	UHGV-0103224_43	394503.Ccel_3068	127.0	2.48e-34	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0103224_43	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
PHROG	UHGV-0103224_44	phrog_373	186.4	0	anti-repressor	transcription regulation
UniRef90	UHGV-0103224_44	UniRef90_UPI001C039A6C	375.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0103224_44	565664.EFXG_01142	175.0	0	ORF6C domain	N/A
Pfam	UHGV-0103224_44	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-0103224_44	PF10552	N/A	N/A	ORF6C domain	ORF6C
NCBIFam	UHGV-0103224_44	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0103224_44	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0103224_44	PF10552,PF08346,TIGR02681,COG3561	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0103224_47	476272.RUMHYD_01925	46.2	0.00000782	N/A	N/A
KOfam	UHGV-0103224_48	K07729	42.5	0.000000000014	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0103224_48	phrog_8	42.6	0.000000000014	transcriptional regulator	transcription regulation
UniRef90	UHGV-0103224_48	UniRef90_UPI001C009F10	115.0	1.83e-32	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0103224_48	1268072.PSAB_01325	52.4	0.0000000369	Transcriptional regulator	N/A
Pfam	UHGV-0103224_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0103224_48	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0103224_48	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
Pfam	UHGV-0103224_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0103224_49	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0103224_50	PF09202,MF_01819,NF041230,COG1321	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0103224_53	748224.HMPREF9436_01443	325.0	0	vancomycin resistance protein	N/A
COG	UHGV-0103224_53	COG2720	N/A	N/A	Vancomycin resistance protein YoaR (function unknown), contains peptidoglycan-binding and VanW domains	N/A
UniRef90	UHGV-0103224_55	UniRef90_A0A6N7TLT0	342.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0103224_55	266265.Bxe_A3948	52.4	0.000000941	Helix-turn-helix domain	N/A
Pfam	UHGV-0103224_55	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0103224_55	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0103224_55	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0103224_56	K14059	140.5	1.99993e-41	int; integrase	N/A
PHROG	UHGV-0103224_56	phrog_1	163.1	0	integrase	integration and excision
UniRef90	UHGV-0103224_56	UniRef90_A0A6N7TNQ4	724.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0103224_56	411471.SUBVAR_05137	258.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0103224_56	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0103224_56	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0103224_56	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0103224_58	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0103224_59	phrog_20016	206.2	0	N/A	unknown function
UniRef90	UHGV-0103224_59	UniRef90_A0A285PT46	201.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0103224_59	1226322.HMPREF1545_00077	182.0	0	N/A	N/A
structural_annotation	UHGV-0103224_59	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0103224_60	phrog_16490	142.7	2.94273e-44	N/A	unknown function
eggNOG-mapper	UHGV-0103224_60	397290.C810_01328	134.0	7.35e-35	N/A	N/A
PHROG	UHGV-0103224_61	phrog_22984	70.3	2.8e-20	N/A	unknown function
PHROG	UHGV-0103224_62	phrog_21718	87.9	1.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0103224_62	397290.C810_05210	78.2	4.47e-16	N/A	N/A
PHROG	UHGV-0103224_63	phrog_3754	90.2	2.5e-26	N/A	unknown function
eggNOG-mapper	UHGV-0103224_63	1485543.JMME01000025_gene2462	99.0	1.85e-25	N/A	N/A
eggNOG-mapper	UHGV-0103224_65	1235798.C817_04600	53.5	0.000000098	N/A	N/A
structural_annotation	UHGV-0103224_65	PF13560,NF040522	N/A	N/A	N/A	N/A
PHROG	UHGV-0103224_66	phrog_99	53.5	0.0000000000000042	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0103224_66	UniRef90_UPI0011C96A8B	92.0	2.24e-18	transcriptional regulator	N/A
eggNOG-mapper	UHGV-0103224_66	742740.HMPREF9474_00071	85.1	3.83e-17	N/A	N/A
Pfam	UHGV-0103224_66	PF00847	N/A	N/A	AP2 domain	AP2
structural_annotation	UHGV-0103224_66	PF18337,PF00847	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0103224_68	PF07870,MF_01506	N/A	N/A	N/A	N/A