UHGV-0103854 (vOTU-041760)

Viral Genome: UHGV-0103854

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0103854
vOTU ID	vOTU-041760
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_230203
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.95 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9821
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.75
Jumbo phage	No

Genome content
Genome length (bp)	38,139
GC content	54.76%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	55
CDS density	90%
Average CDS length (bps)	621.00
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 84.95)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0103854_2	phrog_372	219.1	0	tail protein	tail
UniRef90	UHGV-0103854_2	UniRef90_UPI001373A0FD	225.0	0	N/A	N/A
eggNOG-mapper	UHGV-0103854_2	1235802.C823_05263	212.0	0	N/A	N/A
Pfam	UHGV-0103854_2	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0103854_2	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0103854_2	PF05895,MF_04116,NF010681,COG3401,COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-0103854_3	phrog_6616	102.0	3.8e-31	tail protein	tail
eggNOG-mapper	UHGV-0103854_3	469596.HMPREF9488_01318	295.0	0	N/A	N/A
structural_annotation	UHGV-0103854_3	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0103854_4	phrog_1194	113.7	9.6e-34	N/A	unknown function
UniRef90	UHGV-0103854_4	UniRef90_A0A0B3VTI7	104.0	1.57e-26	N/A	N/A
eggNOG-mapper	UHGV-0103854_4	1414720.CBYM010000002_gene561	112.0	1.67e-30	N/A	N/A
Pfam	UHGV-0103854_4	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0103854_4	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0103854_5	phrog_1535	132.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0103854_5	UniRef90_A0A1C6L0H4	546.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0103854_5	1121866.AUGK01000003_gene1437	274.0	0	phage tail tape measure protein	N/A
COG	UHGV-0103854_5	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
structural_annotation	UHGV-0103854_5	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0103854_6	1211844.CBLM010000023_gene987	53.5	0.0000000989	N/A	N/A
UniRef90	UHGV-0103854_7	UniRef90_UPI00164D364F	162.0	0	N/A	N/A
eggNOG-mapper	UHGV-0103854_7	469596.HMPREF9488_01311	79.7	6.95e-18	N/A	N/A
Pfam	UHGV-0103854_7	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0103854_7	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-0103854_8	phrog_158	58.4	1.4e-16	major tail protein	tail
UniRef90	UHGV-0103854_8	UniRef90_A0A1C6L0H9	207.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0103854_8	1232453.BAIF02000058_gene1634	100.0	1.8e-25	N/A	N/A
Pfam	UHGV-0103854_8	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-0103854_8	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0103854_9	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0103854_10	1298920.KI911353_gene2654	60.1	0.00000000725	N/A	N/A
eggNOG-mapper	UHGV-0103854_11	1121866.AUGK01000003_gene1432	73.2	0.00000000000000783	N/A	N/A
UniRef90	UHGV-0103854_12	UniRef90_UPI001898B4B4	140.0	2.20004e-41	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0103854_12	1298920.KI911353_gene2658	57.8	0.00000000195	N/A	N/A
Pfam	UHGV-0103854_12	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0103854_12	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0103854_13	phrog_1328	131.4	5.4e-39	major head protein	head and packaging
UniRef90	UHGV-0103854_13	UniRef90_UPI00164DD2D5	593.0	0	N/A	N/A
eggNOG-mapper	UHGV-0103854_13	665956.HMPREF1032_03619	236.0	0	N/A	N/A
Pfam	UHGV-0103854_13	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-0103854_13	PF17236,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0103854_15	phrog_64	225.0	0	portal protein	head and packaging
UniRef90	UHGV-0103854_15	UniRef90_A0A6I2QXE1	688.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0103854_15	1123263.AUKY01000015_gene1609	413.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0103854_15	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0103854_15	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0103854_16	phrog_38	158.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0103854_16	UniRef90_A0A6I2QXZ5	896.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0103854_16	1298920.KI911353_gene2682	306.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-0103854_16	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0103854_16	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0103854_16	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0103854_17	PF19190,MF_00791,NF003967,COG2967	N/A	N/A	N/A	N/A
KOfam	UHGV-0103854_18	K14060	150.3	1.54143e-44	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0103854_18	phrog_125	193.3	0	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0103854_18	UniRef90_R7EUM7	276.0	0	Putative site-specific recombinase	N/A
eggNOG-mapper	UHGV-0103854_18	693746.OBV_34630	231.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0103854_18	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0103854_18	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0103854_18	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0103854_20	phrog_434	54.3	0.0000000000000028	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0103854_20	1408437.JNJN01000010_gene1241	97.1	3.08e-25	N/A	N/A
PHROG	UHGV-0103854_22	phrog_606	46.9	0.00000000000037	terminase small subunit	head and packaging
UniRef90	UHGV-0103854_22	UniRef90_UPI001D07B715	220.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0103854_24	693746.OBV_18010	128.0	1.4e-35	N/A	N/A
structural_annotation	UHGV-0103854_24	TIGR01636	N/A	N/A	N/A	N/A
UniRef90	UHGV-0103854_27	UniRef90_UPI001654E08C	62.4	0.0000000012	N/A	N/A
eggNOG-mapper	UHGV-0103854_27	411470.RUMGNA_00214	70.1	0.00000000000103	N/A	N/A
Pfam	UHGV-0103854_27	PF04448	N/A	N/A	N/A	DUF551
PHROG	UHGV-0103854_28	phrog_599	45.8	0.0000000000014	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0103854_28	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0103854_28	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0103854_28	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0103854_28	PF14354,TIGR03655,COG4888	N/A	N/A	N/A	N/A
KOfam	UHGV-0103854_30	K00558	216.5	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0103854_30	phrog_116	255.1	0	DNA methyltransferase	other
UniRef90	UHGV-0103854_30	UniRef90_A0A350THX9	803.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0103854_30	1121334.KB911073_gene1852	705.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0103854_30	MTase_II_00020	98.1	3.6e-32	Type II methyltransferase	RM
Pfam	UHGV-0103854_30	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0103854_30	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0103854_30	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0103854_31	K24451	133.9	1.3e-39	zim; modification methylase	N/A
PHROG	UHGV-0103854_31	phrog_67	106.2	2.9e-31	DNA methyltransferase	other
UniRef90	UHGV-0103854_31	UniRef90_A0A845MWG4	524.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0103854_31	1120971.AUCA01000053_gene371	400.0	0	DNA methylase	N/A
PADLOC	UHGV-0103854_31	MTase_II_00139	108.9	7.5e-32	Type II methyltransferase	RM
Pfam	UHGV-0103854_31	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0103854_31	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0103854_31	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0103854_32	K14440	60.3	8.2e-26	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0103854_32	phrog_62	199.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0103854_32	UniRef90_A0A845MVG4	635.0	0	Helicase	N/A
eggNOG-mapper	UHGV-0103854_32	394503.Ccel_3060	522.0	0	SNF2 family N-terminal domain	N/A
Pfam	UHGV-0103854_32	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0103854_32	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0103854_32	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0103854_32	PF06862,MF_01821,NF003426,COG0553	N/A	N/A	N/A	N/A
KOfam	UHGV-0103854_34	K01160	65.1	2e-18	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0103854_34	phrog_34	60.0	5.2e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0103854_34	UniRef90_A0A2T0APF7	144.0	5.51971e-42	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0103854_34	561177.ANHYDRO_01396	118.0	9.03e-33	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0103854_34	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0103854_34	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0103854_34	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0103854_35	K02314	272.9	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0103854_35	phrog_19	248.8	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0103854_35	UniRef90_A0A3D1XEC3	425.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0103854_35	1408437.JNJN01000010_gene1232	192.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0103854_35	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0103854_35	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0103854_35	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0103854_35	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0103854_36	phrog_270	96.4	4.1e-28	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0103854_36	UniRef90_UPI000F093508	109.0	4.37e-25	phage replication protein	N/A
eggNOG-mapper	UHGV-0103854_36	203119.Cthe_2466	107.0	1.47e-24	N/A	N/A
structural_annotation	UHGV-0103854_36	PF01475,NF006999,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-0103854_37	K03111	157.9	0	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0103854_37	phrog_44	153.9	1.4013e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0103854_37	UniRef90_A0A810QFR8	183.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0103854_37	1007096.BAGW01000023_gene151	181.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0103854_37	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0103854_37	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0103854_37	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0103854_37	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0103854_37	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0103854_38	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0103854_39	phrog_7566	91.3	6.6e-27	N/A	unknown function
UniRef90	UHGV-0103854_39	UniRef90_A0A8D9UHC0	151.0	0	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0103854_39	693746.OBV_25470	114.0	1.22e-31	N/A	N/A
PHROG	UHGV-0103854_40	phrog_374	59.5	7.2e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0103854_40	UniRef90_UPI0004B3FA8C	62.8	0.00000000943	AP2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0103854_40	1423807.BACO01000036_gene1075	74.3	0.0000000000000219	N/A	N/A
structural_annotation	UHGV-0103854_40	PF17375	N/A	N/A	N/A	N/A
PHROG	UHGV-0103854_41	phrog_1389	79.5	4e-23	N/A	unknown function
eggNOG-mapper	UHGV-0103854_41	1347392.CCEZ01000060_gene3269	102.0	7.89e-27	N/A	N/A
structural_annotation	UHGV-0103854_41	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-0103854_42	phrog_155	81.8	1.2e-23	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0103854_42	UniRef90_A0A1C6J8G0	243.0	0	ERF superfamily	N/A
eggNOG-mapper	UHGV-0103854_42	1268072.PSAB_05935	168.0	0	ERF superfamily	N/A
Pfam	UHGV-0103854_42	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0103854_42	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0103854_47	phrog_4433	168.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0103854_47	573061.Clocel_3578	124.0	1.37e-30	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0103854_47	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
UniRef90	UHGV-0103854_48	UniRef90_A0A8D9PDM8	68.2	0.0000000000000958	Pyocin activator protein	N/A
KOfam	UHGV-0103854_49	K22300	46.5	0.00000000000075	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0103854_49	UniRef90_A0A3D3Y6C1	68.6	0.0000000000000553	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0103854_49	796942.HMPREF9623_00878	55.1	0.0000000494	N/A	N/A
Pfam	UHGV-0103854_49	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0103854_49	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0103854_49	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0103854_50	UniRef90_R6CUI5	52.4	0.0000046	Transcriptional repressor of PBSX genes	N/A
COG	UHGV-0103854_50	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0103854_50	PF12844,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0103854_51	COG1321	N/A	N/A	N/A	N/A
Pfam	UHGV-0103854_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0103854_53	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0103854_53	PF13443,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0103854_54	K14059	151.4	9.80909e-45	int; integrase	N/A
PHROG	UHGV-0103854_54	phrog_1	157.8	0	integrase	integration and excision
UniRef90	UHGV-0103854_54	UniRef90_A0A1C5W824	526.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0103854_54	693746.OBV_41260	294.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0103854_54	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0103854_54	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0103854_54	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0103854_55	phrog_30143	326.2	0	N/A	unknown function
UniRef90	UHGV-0103854_55	UniRef90_A0A086ZUX9	350.0	0	ATP-dependent Zn protease (Fragment)	N/A
eggNOG-mapper	UHGV-0103854_55	1519439.JPJG01000091_gene624	426.0	0	N/A	N/A
Pfam	UHGV-0103854_55	PF08903	N/A	N/A	N/A	DUF1846
COG	UHGV-0103854_55	COG4868	N/A	N/A	N/A	N/A