UHGV-0104260 (vOTU-131427)

Viral Genome: UHGV-0104260

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0104260
vOTU ID	vOTU-131427
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_268649
Associated BioSample	SAMEA3879501
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.31 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9815
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.35
Jumbo phage	No

Genome content
Genome length (bp)	29,023
GC content	56.70%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	42
CDS density	90%
Average CDS length (bps)	621.86
Total tRNA genes	7
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 83.31)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0104260_1	UniRef90_A0A8I0LAM1	75.9	1.24e-16	Glycosyl transferase family 2 (Fragment)	N/A
eggNOG-mapper	UHGV-0104260_1	411471.SUBVAR_05589	113.0	3.98e-30	Glycosyltransferase like family 2	N/A
COG	UHGV-0104260_1	COG1216	N/A	N/A	Glycosyltransferase, GT2 family	N/A
KOfam	UHGV-0104260_2	K06400	273.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0104260_2	phrog_95	284.6	0	integrase	integration and excision
UniRef90	UHGV-0104260_2	UniRef90_A0A417HSQ2	372.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0104260_2	1356854.N007_18555	186.0	0	Recombinase	N/A
Pfam	UHGV-0104260_2	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0104260_2	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0104260_2	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0104260_2	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0104260_5	UniRef90_A0A4R1QMH6	87.0	3.93e-21	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0104260_5	445972.ANACOL_00210	101.0	1.03e-27	N/A	N/A
Pfam	UHGV-0104260_5	PF13412	N/A	N/A	Winged helix-turn-helix DNA-binding	HTH_24
structural_annotation	UHGV-0104260_5	PF13560,TIGR02612,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0104260_6	phrog_1129	62.7	4.5e-18	holin	lysis
UniRef90	UHGV-0104260_6	UniRef90_A0A8J6J3M3	100.0	8.6e-26	Phage holin family protein	N/A
eggNOG-mapper	UHGV-0104260_6	742740.HMPREF9474_03522	97.8	1.22e-25	N/A	N/A
Pfam	UHGV-0104260_6	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0104260_6	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0104260_7	phrog_4105	77.1	2e-22	N/A	unknown function
eggNOG-mapper	UHGV-0104260_7	592026.GCWU0000282_003290	82.4	4.77e-19	N/A	N/A
KOfam	UHGV-0104260_8	K01447	83.0	5.4e-24	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0104260_8	phrog_5182	145.0	8.1976e-43	endolysin	lysis
UniRef90	UHGV-0104260_8	UniRef90_R5AZE6	271.0	0	N-acetylmuramoyl-L-alanine amidase family 2	N/A
eggNOG-mapper	UHGV-0104260_8	397288.C806_00777	203.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-0104260_8	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0104260_8	PF00395	N/A	N/A	S-layer homology domain	SLH
COG	UHGV-0104260_8	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0104260_8	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
Pfam	UHGV-0104260_9	PF09479	N/A	N/A	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
NCBIFam	UHGV-0104260_9	TIGR02543.1	N/A	N/A	TIGR02543 family repeat protein	N/A
eggNOG-mapper	UHGV-0104260_11	742733.HMPREF9469_05009	57.8	0.00000000303	N/A	N/A
PHROG	UHGV-0104260_12	phrog_13589	203.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0104260_12	742733.HMPREF9469_05009	227.0	0	N/A	N/A
PHROG	UHGV-0104260_13	phrog_31538	58.5	1.4e-16	N/A	unknown function
PHROG	UHGV-0104260_14	phrog_15594	96.6	1.6e-28	N/A	unknown function
eggNOG-mapper	UHGV-0104260_14	1118055.CAGU01000013_gene763	56.6	0.00000000401	N/A	N/A
structural_annotation	UHGV-0104260_14	PF16640,TIGR04488	N/A	N/A	N/A	N/A
PHROG	UHGV-0104260_15	phrog_24267	105.6	4.9e-31	N/A	unknown function
eggNOG-mapper	UHGV-0104260_15	742742.HMPREF9452_00376	130.0	2.3e-36	tail collar domain protein	N/A
COG	UHGV-0104260_15	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0104260_15	COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-0104260_16	phrog_38190	62.6	5.7e-18	N/A	unknown function
eggNOG-mapper	UHGV-0104260_16	762211.BSTEL_0610	73.2	0.00000000000084	N/A	N/A
PHROG	UHGV-0104260_17	phrog_6616	58.7	1.3e-17	tail protein	tail
structural_annotation	UHGV-0104260_18	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0104260_19	phrog_1535	124.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0104260_19	UniRef90_A0A810PX76	110.0	1.59e-21	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0104260_19	1449050.JNLE01000003_gene3881	136.0	1.99e-30	domain protein	N/A
COG	UHGV-0104260_19	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0104260_19	PF16789,TIGR02473	N/A	N/A	N/A	N/A
PHROG	UHGV-0104260_20	phrog_706	111.4	8.2e-33	N/A	unknown function
UniRef90	UHGV-0104260_20	UniRef90_UPI00164D7633	177.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0104260_20	693746.OBV_18170	171.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0104260_20	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0104260_20	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0104260_21	phrog_11299	102.1	5.3e-30	N/A	unknown function
eggNOG-mapper	UHGV-0104260_21	1449050.JNLE01000003_gene3883	67.4	0.00000000000375	N/A	N/A
structural_annotation	UHGV-0104260_21	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0104260_22	phrog_3099	87.5	1.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-0104260_22	693746.OBV_18150	223.0	0	N/A	N/A
structural_annotation	UHGV-0104260_22	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0104260_23	phrog_3266	64.8	1.2e-18	tail completion	connector
eggNOG-mapper	UHGV-0104260_23	476272.RUMHYD_01781	120.0	2.72e-32	N/A	N/A
structural_annotation	UHGV-0104260_23	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0104260_24	phrog_556	64.9	7.6e-19	minor head protein	head and packaging
UniRef90	UHGV-0104260_24	UniRef90_A0A1H7MNM8	139.0	1.87e-39	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0104260_24	33035.JPJF01000106_gene3128	86.3	2.77e-19	N/A	N/A
Pfam	UHGV-0104260_24	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0104260_24	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0104260_25	phrog_3366	51.0	0.000000000000029	N/A	unknown function
structural_annotation	UHGV-0104260_25	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0104260_26	phrog_541	69.0	6.8e-20	head-tail adaptor	connector
eggNOG-mapper	UHGV-0104260_26	476272.RUMHYD_01778	72.4	0.0000000000000608	N/A	N/A
PHROG	UHGV-0104260_27	phrog_267	48.9	0.000000000000092	major head protein	head and packaging
eggNOG-mapper	UHGV-0104260_27	1235799.C818_04223	157.0	1.1911e-43	N/A	N/A
structural_annotation	UHGV-0104260_27	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0104260_28	phrog_194	40.9	0.000000000038	head scaffolding protein	head and packaging
UniRef90	UHGV-0104260_28	UniRef90_UPI001C0EBA51	127.0	4.77e-33	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0104260_28	1539298.JO41_08210	61.6	0.00000000338	Phage minor structural protein GP20	N/A
Pfam	UHGV-0104260_28	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0104260_28	PF06810	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0104260_29	PF21279,NF040942	N/A	N/A	N/A	N/A
PHROG	UHGV-0104260_30	phrog_581	245.5	0	minor head protein	head and packaging
UniRef90	UHGV-0104260_30	UniRef90_A0A3D4T830	345.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0104260_30	476272.RUMHYD_01761	226.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0104260_30	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0104260_30	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0104260_31	phrog_533	211.6	0	portal protein	head and packaging
UniRef90	UHGV-0104260_31	UniRef90_A0A173TY48	347.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0104260_31	33035.JPJF01000106_gene3135	323.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0104260_31	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0104260_32	phrog_1233	95.2	7.7e-28	N/A	unknown function
eggNOG-mapper	UHGV-0104260_32	1415774.U728_832	93.2	3.72e-23	N/A	N/A
structural_annotation	UHGV-0104260_32	PF13058	N/A	N/A	N/A	N/A
KOfam	UHGV-0104260_33	K06909	397.0	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0104260_33	phrog_5653	148.2	4.76441e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0104260_33	UniRef90_A0A416S378	635.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0104260_33	33035.JPJF01000106_gene3136	598.0	0	Terminase small subunit	N/A
Pfam	UHGV-0104260_33	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-0104260_33	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0104260_33	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0104260_33	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0104260_33	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0104260_33	PF04466,PF17288,PF03592,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0104260_34	PF10922,MF_00839	N/A	N/A	N/A	N/A
PHROG	UHGV-0104260_35	phrog_36	55.1	0.0000000000000015	transcriptional regulator	transcription regulation
UniRef90	UHGV-0104260_35	UniRef90_UPI001C10AB33	122.0	6.28e-33	N/A	N/A
eggNOG-mapper	UHGV-0104260_35	428125.CLOLEP_01806	102.0	7.23e-26	N/A	N/A
Pfam	UHGV-0104260_35	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0104260_35	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0104260_36	phrog_3136	117.2	3.6e-35	N/A	unknown function
UniRef90	UHGV-0104260_36	UniRef90_UPI001C26B029	123.0	1.11e-31	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0104260_36	97139.C824_00742	58.5	0.0000000238	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0104260_36	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0104260_36	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0104260_37	phrog_5781	66.1	5.2e-19	N/A	unknown function
UniRef90	UHGV-0104260_37	UniRef90_A0A1C6JA96	101.0	7.04e-25	Nucleoside 2-deoxyribosyltransferase	N/A
eggNOG-mapper	UHGV-0104260_37	1048834.TC41_1868	58.5	0.00000000612	N/A	N/A
Pfam	UHGV-0104260_37	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0104260_37	PF14359,MF_03036,TIGR03646,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0104260_38	phrog_1029	227.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0104260_38	1203606.HMPREF1526_01890	375.0	0	N/A	N/A
structural_annotation	UHGV-0104260_38	PF10065,COG5532	N/A	N/A	N/A	N/A
PHROG	UHGV-0104260_39	phrog_997	120.3	1.2e-35	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0104260_39	UniRef90_R6MCS9	110.0	7.71e-29	N/A	N/A
eggNOG-mapper	UHGV-0104260_39	1519439.JPJG01000059_gene1910	177.0	0	N/A	N/A
KOfam	UHGV-0104260_40	K00558	224.2	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0104260_40	phrog_116	259.0	0	DNA methyltransferase	other
UniRef90	UHGV-0104260_40	UniRef90_A0A350THX9	742.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0104260_40	1121334.KB911073_gene1852	677.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0104260_40	MTase_II_00020	96.0	8.1e-31	Type II methyltransferase	RM
Pfam	UHGV-0104260_40	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0104260_40	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0104260_40	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0104260_41	K03700	85.2	9.5e-25	recU; recombination protein U	N/A
PHROG	UHGV-0104260_41	phrog_843	129.8	1.2e-38	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0104260_41	UniRef90_A0A1H0W5Y9	167.0	0	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-0104260_41	537013.CLOSTMETH_01720	151.0	1.73761e-43	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
Pfam	UHGV-0104260_41	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-0104260_41	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
structural_annotation	UHGV-0104260_41	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-0104260_42	phrog_3584	53.6	0.0000000000000041	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0104260_42	411470.RUMGNA_02047	71.6	0.00000000000085	N/A	N/A