UHGV-0104297 (vOTU-070738)

Viral Genome: UHGV-0104297

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0104297
vOTU ID	vOTU-070738
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_252632
Associated BioSample	SAMEA3708789
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.42 (High-quality)
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9812
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.99
Jumbo phage	No

Genome content
Genome length (bp)	41,915
GC content	58.30%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	95%
Average CDS length (bps)	747.51
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 97.42)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0104297_3	K22300	44.8	0.0000000000025	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0104297_3	UniRef90_A0A3A9I218	126.0	4.35e-35	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0104297_3	748224.HMPREF9436_01444	95.9	1.27e-23	N/A	N/A
Pfam	UHGV-0104297_3	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0104297_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0104297_3	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0104297_4	K14059	157.5	0	int; integrase	N/A
PHROG	UHGV-0104297_4	phrog_1	170.0	0	integrase	integration and excision
UniRef90	UHGV-0104297_4	UniRef90_A0A1C6JHT2	248.0	0	Site-specific recombinase XerD	N/A
eggNOG-mapper	UHGV-0104297_4	1507.HMPREF0262_00420	214.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0104297_4	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0104297_4	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0104297_4	PF00589,PF14659,MF_01808,NF007246,COG4973	N/A	N/A	N/A	N/A
Pfam	UHGV-0104297_8	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
structural_annotation	UHGV-0104297_8	PF00196,MF_00674,TIGR02985,COG2771	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0104297_9	411470.RUMGNA_00254	79.7	1.2e-18	N/A	N/A
PHROG	UHGV-0104297_10	phrog_355	63.1	4.2e-18	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0104297_10	UniRef90_A0A3E3I255	186.0	0	N/A	N/A
eggNOG-mapper	UHGV-0104297_10	97138.C820_00250	132.0	1.18e-38	N/A	N/A
Pfam	UHGV-0104297_10	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0104297_10	PF14359,COG3613	N/A	N/A	N/A	N/A
KOfam	UHGV-0104297_12	K21471	47.7	0.00000000000031	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	N/A
UniRef90	UHGV-0104297_12	UniRef90_K1TIU6	84.7	7.14e-16	Protein containing SH3, type 3 domain protein	N/A
eggNOG-mapper	UHGV-0104297_12	693746.OBV_42500	54.7	0.00000883	NlpC p60 family	N/A
Pfam	UHGV-0104297_12	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0104297_12	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0104297_12	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0104297_12	PF00877,PF18342,NF033742,COG0791,COG3103	N/A	N/A	N/A	N/A
UniRef90	UHGV-0104297_14	UniRef90_A0A8A5ZEZ9	49.7	0.000000337	ASCH domain-containing protein	N/A
NCBIFam	UHGV-0104297_14	NF040910.1	N/A	N/A	CD1375 family protein	N/A
structural_annotation	UHGV-0104297_14	NF040910	N/A	N/A	N/A	N/A
PHROG	UHGV-0104297_15	phrog_872	89.5	4.4e-26	N/A	unknown function
UniRef90	UHGV-0104297_15	UniRef90_A0A350S1T8	132.0	8.64e-39	N/A	N/A
eggNOG-mapper	UHGV-0104297_15	1280692.AUJL01000027_gene2162	129.0	4.86e-38	N/A	N/A
Pfam	UHGV-0104297_15	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0104297_15	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0104297_15	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0104297_16	phrog_918	122.3	1.4e-36	N/A	unknown function
UniRef90	UHGV-0104297_16	UniRef90_UPI001D017B4D	150.0	1.4013e-45	N/A	N/A
eggNOG-mapper	UHGV-0104297_16	298338.Q5ULN6_9CAUD	119.0	6.29e-34	N/A	N/A
Pfam	UHGV-0104297_16	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0104297_16	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0104297_18	phrog_23208	60.1	1.4e-17	virion structural protein	head and packaging
PHROG	UHGV-0104297_19	phrog_22978	504.1	0	N/A	unknown function
UniRef90	UHGV-0104297_19	UniRef90_A0A396KH15	373.0	0	PBECR3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0104297_19	1410650.JHWL01000003_gene2814	201.0	0	N/A	N/A
eggNOG-mapper	UHGV-0104297_20	1410650.JHWL01000003_gene2815	143.0	5.92e-36	N/A	N/A
PHROG	UHGV-0104297_22	phrog_372	124.1	1e-36	tail protein	tail
UniRef90	UHGV-0104297_22	UniRef90_UPI001373A0FD	210.0	0	N/A	N/A
eggNOG-mapper	UHGV-0104297_22	1235802.C823_05263	187.0	0	N/A	N/A
Pfam	UHGV-0104297_22	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0104297_22	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0104297_22	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0104297_23	NF038340	N/A	N/A	N/A	N/A
PHROG	UHGV-0104297_24	phrog_511	225.2	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0104297_24	1410650.JHWL01000003_gene2827	310.0	0	N/A	N/A
structural_annotation	UHGV-0104297_24	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0104297_25	phrog_12105	134.7	3.7e-40	N/A	unknown function
eggNOG-mapper	UHGV-0104297_25	1519439.JPJG01000060_gene1891	75.1	0.00000000000000185	N/A	N/A
PHROG	UHGV-0104297_27	phrog_1357	204.9	0	major head protein	head and packaging
UniRef90	UHGV-0104297_27	UniRef90_A0A2V2CFL5	329.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0104297_27	657322.FPR_02330	199.0	0	N/A	N/A
Pfam	UHGV-0104297_27	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0104297_27	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0104297_27	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0104297_28	phrog_13908	233.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0104297_28	1410650.JHWL01000003_gene2831	137.0	3.74e-35	N/A	N/A
KOfam	UHGV-0104297_29	K07584	51.5	0.000000000000019	N/A	N/A
PHROG	UHGV-0104297_29	phrog_4478	54.1	0.0000000000000021	peptidase	other
UniRef90	UHGV-0104297_29	UniRef90_A0A7C6L8N4	57.8	0.0000000134	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0104297_29	555088.DealDRAFT_1009	53.9	0.0000000687	Pfam:Peptidase_C108	N/A
Pfam	UHGV-0104297_29	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0104297_29	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0104297_29	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0104297_30	phrog_156	289.5	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0104297_30	1410650.JHWL01000003_gene2833	514.0	0	N/A	N/A
structural_annotation	UHGV-0104297_30	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0104297_31	K06909	126.0	4e-37	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0104297_31	phrog_2	122.6	5.6e-36	terminase large subunit	head and packaging
UniRef90	UHGV-0104297_31	UniRef90_A0A810Q5R0	615.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0104297_31	1410650.JHWL01000003_gene2834	602.0	0	N/A	N/A
Pfam	UHGV-0104297_31	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0104297_31	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0104297_31	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0104297_32	phrog_1206	46.6	0.00000000000068	terminase small subunit	head and packaging
Pfam	UHGV-0104297_34	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-0104297_34	PF01402,NF041793,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-0104297_35	phrog_3584	221.3	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0104297_35	UniRef90_I2E8X7	126.0	2.41e-31	Gp31	N/A
eggNOG-mapper	UHGV-0104297_35	1415775.U729_1544	136.0	1.19e-35	N/A	N/A
structural_annotation	UHGV-0104297_35	PF21578,NF033538	N/A	N/A	N/A	N/A
PHROG	UHGV-0104297_37	phrog_21498	260.7	0	N/A	unknown function
UniRef90	UHGV-0104297_37	UniRef90_C7MM70	215.0	0	ParB-like nuclease	N/A
eggNOG-mapper	UHGV-0104297_37	469378.Ccur_02830	215.0	0	DNA binding	N/A
COG	UHGV-0104297_37	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0104297_37	PF05869,TIGR01712	N/A	N/A	N/A	N/A
PHROG	UHGV-0104297_38	phrog_824	145.8	1.30321e-43	N/A	unknown function
UniRef90	UHGV-0104297_38	UniRef90_A0A645CPG3	154.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0104297_38	665956.HMPREF1032_00132	130.0	5.87e-37	VRR_NUC	N/A
Pfam	UHGV-0104297_38	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0104297_38	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-0104297_40	phrog_111	156.9	0	DNA methyltransferase	other
UniRef90	UHGV-0104297_40	UniRef90_A0A384X9E7	191.0	0	Adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0104297_40	1450694.BTS2_0497	187.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-0104297_40	oMTase_00015	145.7	2.8026e-43	orphan methyltransferase	RM
Pfam	UHGV-0104297_40	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
NCBIFam	UHGV-0104297_40	TIGR01712.1	N/A	N/A	phage N-6-adenine-methyltransferase	N/A
structural_annotation	UHGV-0104297_40	PF05869,TIGR01712,COG0338	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0104297_41	TIGR03655	N/A	N/A	N/A	N/A
KOfam	UHGV-0104297_42	K00558	217.9	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0104297_42	phrog_116	258.1	0	DNA methyltransferase	other
UniRef90	UHGV-0104297_42	UniRef90_UPI00164A64BC	366.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0104297_42	445972.ANACOL_03332	355.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0104297_42	oMTase_00004	309.2	0	orphan methyltransferase	RM
Pfam	UHGV-0104297_42	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0104297_42	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0104297_42	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0104297_42	PF00145,MF_02100,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0104297_45	K03111	114.6	1.5e-33	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0104297_45	phrog_44	107.7	1.4e-31	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0104297_45	UniRef90_A0A431I6W7	94.7	3.68e-22	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0104297_45	926550.CLDAP_14930	92.8	2.55e-22	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0104297_45	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0104297_45	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0104297_45	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0104297_45	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0104297_45	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
Pfam	UHGV-0104297_50	PF01381	N/A	N/A	Helix-turn-helix	HTH_3