UHGV-0104320 (vOTU-008576)

Viral Genome: UHGV-0104320

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0104320
vOTU ID	vOTU-008576
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_270241
Associated BioSample	SAMEA3879583
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9773
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.94
Jumbo phage	No

Genome content
Genome length (bp)	38,485
GC content	37.19%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	54
CDS density	93%
Average CDS length (bps)	660.72
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0104320_1	K07273	102.9	4.4e-30	acm; lysozyme	N/A
PHROG	UHGV-0104320_1	phrog_291	87.1	2.7e-25	endolysin	lysis
UniRef90	UHGV-0104320_1	UniRef90_A0A174PB89	347.0	0	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
eggNOG-mapper	UHGV-0104320_1	515620.EUBELI_01316	112.0	4.83e-25	Glycoside Hydrolase Family 25-like lysozyme endolysin	N/A
Pfam	UHGV-0104320_1	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0104320_1	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-0104320_1	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
PHROG	UHGV-0104320_2	phrog_1129	74.8	8.2e-22	holin	lysis
UniRef90	UHGV-0104320_2	UniRef90_UPI000E5CE6BF	159.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0104320_2	411461.DORFOR_00721	100.0	7.36e-27	N/A	N/A
Pfam	UHGV-0104320_2	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0104320_2	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0104320_3	phrog_1863	54.9	1.4e-16	N/A	unknown function
UniRef90	UHGV-0104320_3	UniRef90_UPI001D0865D2	83.2	3.17e-19	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0104320_3	1226322.HMPREF1545_04027	83.6	2.94e-20	N/A	N/A
eggNOG-mapper	UHGV-0104320_4	536227.CcarbDRAFT_4479	53.5	0.000000277	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0104320_4	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
COG	UHGV-0104320_4	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
PHROG	UHGV-0104320_7	phrog_2566	45.8	0.00000000000098	N/A	unknown function
PHROG	UHGV-0104320_8	phrog_6616	157.4	0	tail protein	tail
UniRef90	UHGV-0104320_8	UniRef90_A0A8D9PGP3	745.0	0	Minor structural protein	N/A
eggNOG-mapper	UHGV-0104320_8	1499683.CCFF01000014_gene3896	267.0	0	Phage minor structural protein	N/A
COG	UHGV-0104320_8	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0104320_8	PF16466,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0104320_9	phrog_1401	66.6	3.8e-19	N/A	unknown function
UniRef90	UHGV-0104320_9	UniRef90_UPI0007099B7A	70.1	0.00000000000087	N/A	N/A
eggNOG-mapper	UHGV-0104320_9	1294142.CINTURNW_1705	60.5	0.000000000777	N/A	N/A
structural_annotation	UHGV-0104320_9	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0104320_10	phrog_1194	82.4	4.8e-24	N/A	unknown function
eggNOG-mapper	UHGV-0104320_10	33035.JPJF01000093_gene2242	155.0	0	N/A	N/A
structural_annotation	UHGV-0104320_10	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0104320_11	phrog_1535	283.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0104320_11	UniRef90_R6TDK7	350.0	0	Phage-related protein-like protein	N/A
eggNOG-mapper	UHGV-0104320_11	33035.JPJF01000093_gene2243	341.0	0	phage tail tape measure protein	N/A
COG	UHGV-0104320_11	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0104320_11	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0104320_12	phrog_8355	117.5	2.6e-35	N/A	unknown function
UniRef90	UHGV-0104320_12	UniRef90_UPI0006BBA9AA	175.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0104320_12	1117108.PAALTS15_13522	117.0	2.33e-32	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0104320_12	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0104320_12	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0104320_13	phrog_8300	66.3	4.9e-19	N/A	unknown function
eggNOG-mapper	UHGV-0104320_13	1151292.QEW_2425	59.3	0.000000000613	N/A	N/A
structural_annotation	UHGV-0104320_13	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0104320_14	phrog_820	117.7	7.3e-35	major tail protein	tail
UniRef90	UHGV-0104320_14	UniRef90_T3DDR1	171.0	0	Phage major tail 2 family protein	N/A
eggNOG-mapper	UHGV-0104320_14	1151292.QEW_2426	171.0	0	N/A	N/A
structural_annotation	UHGV-0104320_14	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0104320_15	phrog_2595	80.9	1.5e-23	head-tail connector protein	connector
UniRef90	UHGV-0104320_15	UniRef90_UPI00164BAA81	135.0	1.48e-38	minor capsid protein	N/A
eggNOG-mapper	UHGV-0104320_15	742740.HMPREF9474_03510	125.0	2.13e-35	N/A	N/A
Pfam	UHGV-0104320_15	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0104320_15	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0104320_16	phrog_556	59.0	7.8e-17	minor head protein	head and packaging
eggNOG-mapper	UHGV-0104320_16	742740.HMPREF9474_03509	144.0	1.52041e-42	N/A	N/A
PHROG	UHGV-0104320_17	phrog_8710	117.2	7.7e-35	N/A	unknown function
eggNOG-mapper	UHGV-0104320_17	33035.JPJF01000093_gene2249	105.0	5.65e-28	N/A	N/A
structural_annotation	UHGV-0104320_17	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0104320_18	phrog_541	68.4	1.1e-19	head-tail adaptor	connector
eggNOG-mapper	UHGV-0104320_18	1304866.K413DRAFT_0783	147.0	2.8026e-44	N/A	N/A
PHROG	UHGV-0104320_19	phrog_422	257.0	0	major head protein	head and packaging
UniRef90	UHGV-0104320_19	UniRef90_A0A3D5M0U8	496.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0104320_19	663278.Ethha_1589	377.0	0	N/A	N/A
structural_annotation	UHGV-0104320_19	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0104320_20	phrog_2303	138.2	6.09999e-41	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0104320_20	483218.BACPEC_01156	134.0	3.67e-36	N/A	N/A
PHROG	UHGV-0104320_21	phrog_872	169.7	0	N/A	unknown function
UniRef90	UHGV-0104320_21	UniRef90_A0A413P9Z7	214.0	0	N/A	N/A
eggNOG-mapper	UHGV-0104320_21	573413.Spirs_2170	177.0	0	N/A	N/A
Pfam	UHGV-0104320_21	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0104320_21	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0104320_21	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0104320_23	phrog_581	248.4	0	minor head protein	head and packaging
UniRef90	UHGV-0104320_23	UniRef90_A0A413YU28	652.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0104320_23	33035.JPJF01000093_gene2255	441.0	0	N/A	N/A
Pfam	UHGV-0104320_23	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0104320_23	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-0104320_23	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0104320_24	phrog_533	286.1	0	portal protein	head and packaging
UniRef90	UHGV-0104320_24	UniRef90_A0A413YU90	955.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0104320_24	33035.JPJF01000093_gene2257	548.0	0	N/A	N/A
structural_annotation	UHGV-0104320_24	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0104320_25	K06909	94.7	1.2e-27	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0104320_25	phrog_2	69.6	6.7e-20	terminase large subunit	head and packaging
UniRef90	UHGV-0104320_25	UniRef90_A0A413YU24	957.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0104320_25	1294142.CINTURNW_1023	517.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0104320_25	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0104320_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0104320_25	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0104320_26	K07474	152.5	4.2039e-45	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0104320_26	phrog_51	161.0	0	terminase small subunit	head and packaging
UniRef90	UHGV-0104320_26	UniRef90_A0A413YU49	371.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0104320_26	1499683.CCFF01000014_gene3916	149.0	9.94922e-43	Terminase small subunit	N/A
Pfam	UHGV-0104320_26	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0104320_26	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0104320_26	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0104320_27	phrog_36	62.7	6.8e-18	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0104320_27	397290.C810_01391	106.0	2.91e-27	N/A	N/A
structural_annotation	UHGV-0104320_27	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0104320_28	phrog_625	65.2	5.2e-19	N/A	unknown function
UniRef90	UHGV-0104320_28	UniRef90_A0A413YU40	253.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0104320_28	397290.C810_01502	121.0	8.89e-34	N/A	N/A
structural_annotation	UHGV-0104320_28	PF12961,COG2028	N/A	N/A	N/A	N/A
PHROG	UHGV-0104320_29	phrog_20593	72.2	6.3e-21	N/A	unknown function
PHROG	UHGV-0104320_32	phrog_8684	66.2	1.5e-19	N/A	unknown function
UniRef90	UHGV-0104320_32	UniRef90_A0A413YU53	309.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0104320_32	476272.RUMHYD_03337	70.5	0.000000000000222	N/A	N/A
Pfam	UHGV-0104320_32	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-0104320_32	PF09643,TIGR01671	N/A	N/A	N/A	N/A
KOfam	UHGV-0104320_33	K07451	44.0	0.0000000000046	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0104320_33	phrog_2118	112.0	6.2e-33	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0104320_33	UniRef90_A0A413YU08	292.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0104320_33	742740.HMPREF9474_03129	222.0	0	HNH endonuclease	N/A
Pfam	UHGV-0104320_33	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0104320_33	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0104320_33	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0104320_35	phrog_15077	93.0	6.2e-27	N/A	unknown function
UniRef90	UHGV-0104320_35	UniRef90_A0A3A6HZA9	206.0	0	N/A	N/A
eggNOG-mapper	UHGV-0104320_35	1280698.AUJS01000007_gene1019	225.0	0	N/A	N/A
structural_annotation	UHGV-0104320_35	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0104320_36	phrog_8470	176.4	0	N/A	unknown function
UniRef90	UHGV-0104320_36	UniRef90_UPI0018999714	667.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0104320_36	742733.HMPREF9469_00219	373.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0104320_36	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0104320_36	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0104320_37	phrog_4433	72.2	3.3e-26	N/A	unknown function
eggNOG-mapper	UHGV-0104320_37	742733.HMPREF9469_00220	126.0	3.39e-34	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0104320_37	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0104320_37	PF12120,NF000318	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0104320_38	1280698.AUJS01000007_gene1016	158.0	0	N/A	N/A
KOfam	UHGV-0104320_40	K03469	63.7	4.3e-18	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0104320_40	phrog_531	61.5	1.7e-17	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0104320_40	UniRef90_A0A413YU26	304.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0104320_40	498848.TaqDRAFT_4493	68.2	0.00000000000243	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0104320_40	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0104320_40	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0104320_40	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0104320_41	phrog_3584	242.8	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0104320_41	UniRef90_A0A4P8IFK4	345.0	0	N/A	N/A
eggNOG-mapper	UHGV-0104320_41	742741.HMPREF9475_00404	296.0	0	N/A	N/A
structural_annotation	UHGV-0104320_41	PF21578	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0104320_45	NF040556	N/A	N/A	N/A	N/A
UniRef90	UHGV-0104320_48	UniRef90_A0A3B9CCY2	98.2	1.07e-25	HTH cro/C1-type domain-containing protein	N/A
structural_annotation	UHGV-0104320_48	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0104320_49	K22299	69.7	6.3e-20	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0104320_49	phrog_8	77.2	2.9e-22	transcriptional regulator	transcription regulation
UniRef90	UHGV-0104320_49	UniRef90_A0A828T008	150.0	2.8026e-45	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0104320_49	411470.RUMGNA_03101	87.4	4.58e-21	transcriptional regulator, XRE family	N/A
PADLOC	UHGV-0104320_49	retron_type_VI_hth_cluster2_1	52.8	0.00000000000001	N/A	Retron
Pfam	UHGV-0104320_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0104320_49	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0104320_49	PF12844,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0104320_50	phrog_87	86.9	1.9e-25	metallo-protease	other
UniRef90	UHGV-0104320_50	UniRef90_A0A3B9CDB4	201.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0104320_50	742723.HMPREF9477_00938	174.0	0	Zn peptidase	N/A
Pfam	UHGV-0104320_50	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0104320_50	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0104320_50	PF06114,COG3800	N/A	N/A	N/A	N/A
PHROG	UHGV-0104320_51	phrog_1847	511.8	0	N/A	unknown function
UniRef90	UHGV-0104320_51	UniRef90_R9JJN1	485.0	0	T5orf172 domain-containing protein	N/A
eggNOG-mapper	UHGV-0104320_51	1235792.C808_05258	485.0	0	N/A	N/A
Pfam	UHGV-0104320_51	PF13250	N/A	N/A	N/A	DUF4041
Pfam	UHGV-0104320_51	PF10544	N/A	N/A	T5orf172 domain	T5orf172
COG	UHGV-0104320_51	COG0172	N/A	N/A	Seryl-tRNA synthetase	N/A
structural_annotation	UHGV-0104320_51	PF13250,PF19824,MF_01506	N/A	N/A	N/A	N/A
KOfam	UHGV-0104320_52	K06400	375.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0104320_52	phrog_95	363.1	0	integrase	integration and excision
UniRef90	UHGV-0104320_52	UniRef90_A0A413YU13	912.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0104320_52	411462.DORLON_00823	453.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0104320_52	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0104320_52	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0104320_52	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0104320_52	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0104320_52	PF00239,PF07508,PF13408,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0104320_53	phrog_5763	86.3	1.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0104320_53	1033744.CAEL01000026_gene1411	104.0	1.6e-23	N/A	N/A
PHROG	UHGV-0104320_54	phrog_1281	134.2	6e-40	N/A	unknown function
UniRef90	UHGV-0104320_54	UniRef90_UPI00164A9B39	149.0	2.00386e-43	N/A	N/A
eggNOG-mapper	UHGV-0104320_54	1508644.SFBmNL_01513	144.0	4.67053e-42	N/A	N/A
Pfam	UHGV-0104320_54	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-0104320_54	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0104320_54	PF13274,COG3600	N/A	N/A	N/A	N/A