UHGV-0104325 (vOTU-045485)

Viral Genome: UHGV-0104325

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0104325
vOTU ID	vOTU-045485
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_242662
Associated BioSample	SAMEA3708826
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9817
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.41
Jumbo phage	No

Genome content
Genome length (bp)	41,255
GC content	58.85%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	57
CDS density	92%
Average CDS length (bps)	667.32
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0104325_2	phrog_511	239.1	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0104325_2	1410650.JHWL01000003_gene2827	318.0	0	N/A	N/A
structural_annotation	UHGV-0104325_2	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
KOfam	UHGV-0104325_3	K06909	150.0	1.96182e-44	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0104325_3	phrog_979	151.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0104325_3	UniRef90_UPI0006875436	632.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0104325_3	1410650.JHWL01000003_gene2834	632.0	0	N/A	N/A
Pfam	UHGV-0104325_3	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0104325_3	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0104325_3	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0104325_4	phrog_606	68.9	9.1e-20	terminase small subunit	head and packaging
UniRef90	UHGV-0104325_4	UniRef90_UPI001F487344	129.0	1.76e-35	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0104325_4	397290.C810_05185	129.0	7.26e-36	DNA-packaging protein gp3	N/A
Pfam	UHGV-0104325_4	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0104325_4	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0104325_6	phrog_3584	113.6	1.7e-33	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0104325_6	537013.CLOSTMETH_02141	77.8	0.00000000000000943	N/A	N/A
structural_annotation	UHGV-0104325_6	PF21578,MF_00360	N/A	N/A	N/A	N/A
KOfam	UHGV-0104325_7	K00571	95.9	4.3e-28	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0104325_7	phrog_23224	181.2	0	DNA methyltransferase	other
UniRef90	UHGV-0104325_7	UniRef90_UPI001D0839DE	358.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0104325_7	718252.FP2_06750	354.0	0	DNA methylase	N/A
PADLOC	UHGV-0104325_7	MTase_II_00172	89.9	6.9e-28	Type II methyltransferase	RM
Pfam	UHGV-0104325_7	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0104325_7	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0104325_7	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0104325_8	phrog_2245	85.7	5.2e-25	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0104325_8	UniRef90_A0A4U9RLZ8	66.2	0.0000000000302	N/A	N/A
eggNOG-mapper	UHGV-0104325_8	428125.CLOLEP_01814	65.1	0.0000000000411	COG NOG14118 non supervised orthologous group	N/A
structural_annotation	UHGV-0104325_8	PF08271	N/A	N/A	N/A	N/A
PHROG	UHGV-0104325_10	phrog_374	56.5	6.3e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0104325_10	1423807.BACO01000037_gene1103	68.2	0.00000000000166	N/A	N/A
PHROG	UHGV-0104325_12	phrog_190	95.4	6.5e-28	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0104325_12	UniRef90_UPI0006C2AC63	124.0	2.84e-33	N/A	N/A
eggNOG-mapper	UHGV-0104325_12	693746.OBV_25250	116.0	3.74e-31	N/A	N/A
Pfam	UHGV-0104325_12	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0104325_12	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0104325_14	phrog_599	43.4	0.0000000000075	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0104325_14	UniRef90_UPI001B11004B	88.2	2.56e-21	Lar family restriction alleviation protein	N/A
Pfam	UHGV-0104325_14	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
dbAPIS	UHGV-0104325_14	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
PHROG	UHGV-0104325_16	phrog_38832	51.9	0.0000000000000063	N/A	unknown function
PHROG	UHGV-0104325_17	phrog_355	57.4	2.7e-16	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0104325_17	UniRef90_A0A413FXK8	106.0	5.67e-28	N/A	N/A
eggNOG-mapper	UHGV-0104325_17	573061.Clocel_3558	74.3	5.4e-16	N/A	N/A
Pfam	UHGV-0104325_17	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0104325_17	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0104325_17	PF14359,MF_03036,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0104325_18	phrog_3136	134.1	5e-40	N/A	unknown function
UniRef90	UHGV-0104325_18	UniRef90_A0A843H9M8	94.4	8.2e-21	ASCH domain-containing protein	N/A
COG	UHGV-0104325_18	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0104325_18	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
Pfam	UHGV-0104325_20	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0104325_23	PF05082	N/A	N/A	N/A	N/A
PHROG	UHGV-0104325_25	phrog_1468	58.2	6.8e-17	transcriptional repressor	transcription regulation
UniRef90	UHGV-0104325_25	UniRef90_A0A1Y3RFS1	54.7	0.0000000283	XRE family transcriptional regulator	N/A
structural_annotation	UHGV-0104325_26	PF10548	N/A	N/A	N/A	N/A
UniRef90	UHGV-0104325_29	UniRef90_UPI000951234C	67.8	0.000000000000101	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0104325_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0104325_29	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0104325_30	K22300	57.7	2.7e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0104325_30	phrog_8	48.1	0.00000000000025	transcriptional regulator	transcription regulation
UniRef90	UHGV-0104325_30	UniRef90_A0A844DFR0	120.0	9.52e-33	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0104325_30	748224.HMPREF9436_01444	118.0	3.6e-32	N/A	N/A
Pfam	UHGV-0104325_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0104325_30	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0104325_30	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0104325_31	K05516	70.3	4.2e-20	cbpA; curved DNA-binding protein	N/A
PHROG	UHGV-0104325_31	phrog_14336	52.9	0.0000000000000053	N/A	unknown function
UniRef90	UHGV-0104325_31	UniRef90_UPI00193A3DF3	61.2	0.000000014	dnaJ homolog subfamily B member 6-A-like	N/A
eggNOG-mapper	UHGV-0104325_31	401526.TcarDRAFT_1254	69.3	0.0000000000647	ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins	N/A
Pfam	UHGV-0104325_31	PF00226	N/A	N/A	DnaJ domain	DnaJ
COG	UHGV-0104325_31	COG0484	N/A	N/A	DnaJ-class molecular chaperone with C-terminal Zn finger domain	N/A
Pfam	UHGV-0104325_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0104325_33	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0104325_33	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0104325_34	K14059	208.2	0	int; integrase	N/A
PHROG	UHGV-0104325_34	phrog_1	198.6	0	integrase	integration and excision
UniRef90	UHGV-0104325_34	UniRef90_A0A212JT52	254.0	0	Putative Integrase family protein	N/A
eggNOG-mapper	UHGV-0104325_34	1507.HMPREF0262_00307	200.0	0	Phage integrase family	N/A
Pfam	UHGV-0104325_34	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0104325_34	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0104325_34	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0104325_34	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0104325_35	UniRef90_A0A8F0WD75	75.5	0.0000000000000591	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0104325_35	1378168.N510_03079	67.4	0.0000000000278	N/A	N/A
structural_annotation	UHGV-0104325_36	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0104325_37	phrog_16490	54.0	0.0000000000000038	N/A	unknown function
eggNOG-mapper	UHGV-0104325_37	641112.ACOK01000103_gene525	54.3	0.00000208	N/A	N/A
UniRef90	UHGV-0104325_39	UniRef90_UPI00164EA432	226.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0104325_39	525254.HMPREF0072_1273	222.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
COG	UHGV-0104325_39	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0104325_39	NF033743	N/A	N/A	N/A	N/A
PHROG	UHGV-0104325_40	phrog_6918	95.3	4.3e-28	holin	lysis
UniRef90	UHGV-0104325_40	UniRef90_A0A316QCY7	102.0	4.93e-26	Holin	N/A
eggNOG-mapper	UHGV-0104325_40	1297617.JPJD01000020_gene301	100.0	3.45e-26	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0104325_40	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0104325_40	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-0104325_44	phrog_37900	56.2	1.2e-17	N/A	unknown function
UniRef90	UHGV-0104325_44	UniRef90_R5IRZ6	261.0	0	N/A	N/A
eggNOG-mapper	UHGV-0104325_44	1519439.JPJG01000060_gene1894	184.0	0	N/A	N/A
Pfam	UHGV-0104325_44	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0104325_44	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0104325_44	PF19789	N/A	N/A	N/A	N/A
KOfam	UHGV-0104325_45	K16628	179.5	0	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0104325_45	phrog_819	132.1	0	tail protein	tail
eggNOG-mapper	UHGV-0104325_45	1232443.BAIA02000078_gene14	82.4	0.0000000000000842	nuclear chromosome segregation	N/A
Pfam	UHGV-0104325_45	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0104325_45	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0104325_46	PF18962,NF011773	N/A	N/A	N/A	N/A
PHROG	UHGV-0104325_47	phrog_33872	56.7	4.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-0104325_47	693746.OBV_19740	60.5	0.0000000000977	N/A	N/A
PHROG	UHGV-0104325_48	phrog_22978	125.0	1.90016e-42	N/A	unknown function
eggNOG-mapper	UHGV-0104325_48	1408437.JNJN01000039_gene389	476.0	0	heme binding	N/A
Pfam	UHGV-0104325_48	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
COG	UHGV-0104325_48	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
UniRef90	UHGV-0104325_49	UniRef90_R5DCX9	189.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0104325_49	1410650.JHWL01000003_gene2815	139.0	2.71e-34	N/A	N/A
PHROG	UHGV-0104325_50	phrog_12105	125.4	3e-37	N/A	unknown function
eggNOG-mapper	UHGV-0104325_50	1226322.HMPREF1545_03850	62.4	0.000000000102	N/A	N/A
PHROG	UHGV-0104325_52	phrog_1357	217.0	0	major head protein	head and packaging
UniRef90	UHGV-0104325_52	UniRef90_A0A2V2CFL5	397.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0104325_52	1410650.JHWL01000003_gene2830	275.0	0	N/A	N/A
Pfam	UHGV-0104325_52	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0104325_52	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0104325_52	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0104325_53	phrog_13908	145.2	4.59626e-43	N/A	unknown function
eggNOG-mapper	UHGV-0104325_53	1410650.JHWL01000003_gene2831	104.0	2.53e-23	N/A	N/A
PHROG	UHGV-0104325_54	phrog_156	291.1	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0104325_54	1410650.JHWL01000003_gene2833	541.0	0	N/A	N/A
structural_annotation	UHGV-0104325_54	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0104325_56	phrog_37329	50.6	0.000000000000023	N/A	unknown function
Pfam	UHGV-0104325_56	PF00041	N/A	N/A	Fibronectin type III domain	fn3
COG	UHGV-0104325_56	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-0104325_56	PF17744,PF16655,MF_01905,NF038116,COG3979,COG2033	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0104325_57	537007.BLAHAN_05255	61.6	0.000000192	N/A	N/A