UHGV-0104489 (vOTU-017566)

Viral Genome: UHGV-0104489

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0104489
vOTU ID	vOTU-017566
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_239735
Associated BioSample	SAMEA3708473
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.7 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9726
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.83
Jumbo phage	No

Genome content
Genome length (bp)	30,030
GC content	45.44%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	89%
Average CDS length (bps)	531.96
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 75.7)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0104489_2	UniRef90_A0A3R6V2R9	475.0	0	Tail fiber domain-containing protein	N/A
Pfam	UHGV-0104489_2	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-0104489_2	NF041249	N/A	N/A	N/A	N/A
PHROG	UHGV-0104489_3	phrog_511	203.8	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0104489_3	1321782.HMPREF1986_00351	419.0	0	N/A	N/A
structural_annotation	UHGV-0104489_3	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0104489_4	phrog_12105	97.2	1.6e-28	N/A	unknown function
KOfam	UHGV-0104489_7	K17733	151.3	5.60519e-45	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-0104489_7	phrog_2649	132.3	5.3e-39	endolysin	lysis
UniRef90	UHGV-0104489_7	UniRef90_A0A416FC87	418.0	0	Peptidase_M15_4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0104489_7	411902.CLOBOL_06235	212.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
Pfam	UHGV-0104489_7	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
Pfam	UHGV-0104489_7	PF01473	N/A	N/A	Putative cell wall binding repeat	Choline_bind_1
COG	UHGV-0104489_7	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-0104489_7	PF02557,PF19127,MF_01924,NF007557,TIGR04035,COG2173	N/A	N/A	N/A	N/A
PHROG	UHGV-0104489_8	phrog_918	131.0	2.8e-39	N/A	unknown function
UniRef90	UHGV-0104489_8	UniRef90_UPI00115A7D93	174.0	0	N/A	N/A
eggNOG-mapper	UHGV-0104489_8	469618.FVAG_01307	143.0	9.24857e-44	N/A	N/A
Pfam	UHGV-0104489_8	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0104489_8	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0104489_9	phrog_355	68.1	1.1e-19	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0104489_9	UniRef90_A0A417BWH3	209.0	0	N/A	N/A
eggNOG-mapper	UHGV-0104489_9	97138.C820_00250	124.0	1.79e-35	N/A	N/A
Pfam	UHGV-0104489_9	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-0104489_9	PF14359,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0104489_10	phrog_1129	77.5	1.2e-22	holin	lysis
UniRef90	UHGV-0104489_10	UniRef90_A0A3R6U6I1	160.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0104489_10	742740.HMPREF9474_03522	103.0	6.32e-28	N/A	N/A
Pfam	UHGV-0104489_10	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0104489_10	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0104489_11	phrog_4105	101.1	6.6e-30	N/A	unknown function
eggNOG-mapper	UHGV-0104489_11	657322.FPR_27220	106.0	2.86e-28	N/A	N/A
UniRef90	UHGV-0104489_13	UniRef90_A0A3R6QNF9	71.6	5.66e-16	ASCH domain-containing protein	N/A
NCBIFam	UHGV-0104489_13	NF040910.1	N/A	N/A	CD1375 family protein	N/A
PHROG	UHGV-0104489_14	phrog_12931	78.6	7.6e-23	N/A	unknown function
eggNOG-mapper	UHGV-0104489_14	1298920.KI911353_gene2672	87.4	4e-20	N/A	N/A
PHROG	UHGV-0104489_15	phrog_25888	120.7	9.6e-36	N/A	unknown function
UniRef90	UHGV-0104489_15	UniRef90_A0A3R6NAE3	406.0	0	H_lectin domain-containing protein	N/A
eggNOG-mapper	UHGV-0104489_15	610130.Closa_0759	70.9	0.000000000314	N/A	N/A
Pfam	UHGV-0104489_15	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
PHROG	UHGV-0104489_16	phrog_15239	84.9	5.8e-25	N/A	unknown function
PHROG	UHGV-0104489_17	phrog_1357	289.8	0	major head protein	head and packaging
UniRef90	UHGV-0104489_17	UniRef90_A0A3R6TVJ6	657.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0104489_17	1203606.HMPREF1526_02746	323.0	0	N/A	N/A
Pfam	UHGV-0104489_17	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0104489_17	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0104489_17	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0104489_18	phrog_13908	244.1	0	N/A	unknown function
UniRef90	UHGV-0104489_18	UniRef90_A0A174CZ20	117.0	2.53e-26	Predicted ribosomal protein	N/A
eggNOG-mapper	UHGV-0104489_18	748224.HMPREF9436_01398	93.2	1.69e-18	Cysteine protease Prp	N/A
COG	UHGV-0104489_18	COG2868	N/A	N/A	N/A	N/A
KOfam	UHGV-0104489_19	K07584	49.8	0.000000000000077	N/A	N/A
PHROG	UHGV-0104489_19	phrog_4478	63.6	2.5e-18	peptidase	other
UniRef90	UHGV-0104489_19	UniRef90_A0A417BWI8	214.0	0	Ribosomal-processing cysteine protease Prp	N/A
Pfam	UHGV-0104489_19	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0104489_19	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0104489_19	NF011130,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0104489_20	phrog_156	336.8	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0104489_20	748224.HMPREF9436_01396	508.0	0	N/A	N/A
structural_annotation	UHGV-0104489_20	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0104489_21	K06909	116.8	2.4e-34	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0104489_21	phrog_979	205.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0104489_21	UniRef90_A0A3R6NVR9	961.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0104489_21	748224.HMPREF9436_02548	620.0	0	Terminase-like family	N/A
Pfam	UHGV-0104489_21	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0104489_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0104489_21	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0104489_22	phrog_309	121.0	7.3e-36	terminase small subunit	head and packaging
UniRef90	UHGV-0104489_22	UniRef90_UPI001A9AF3C1	324.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0104489_22	1567014.A0A0A7RTX1_9VIRU	114.0	5.94e-30	N/A	N/A
Pfam	UHGV-0104489_22	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-0104489_22	PF07141	N/A	N/A	N/A	N/A
PHROG	UHGV-0104489_24	phrog_3584	180.7	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0104489_24	1321782.HMPREF1986_00335	234.0	0	N/A	N/A
structural_annotation	UHGV-0104489_24	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0104489_25	K04763	189.6	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0104489_25	phrog_1	148.9	4.76441e-44	integrase	integration and excision
UniRef90	UHGV-0104489_25	UniRef90_A0A2S6HJ77	417.0	0	Site-specific recombinase XerD	N/A
eggNOG-mapper	UHGV-0104489_25	1298920.KI911353_gene2699	400.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0104489_25	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0104489_25	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0104489_25	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0104489_25	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-0104489_26	UniRef90_A0A3R6V2Q9	108.0	3.18e-30	CopG family transcriptional regulator	N/A
Pfam	UHGV-0104489_26	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-0104489_26	PF01402,NF041793,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-0104489_29	phrog_2316	54.2	0.0000000000000031	N/A	unknown function
UniRef90	UHGV-0104489_29	UniRef90_UPI001CC48B51	75.5	6.35e-16	N/A	N/A
eggNOG-mapper	UHGV-0104489_29	1280676.AUJO01000024_gene3262	86.7	5.09e-21	N/A	N/A
structural_annotation	UHGV-0104489_29	PF16475,MF_00436,NF033216,COG1923	N/A	N/A	N/A	N/A
PHROG	UHGV-0104489_31	phrog_15198	43.1	0.0000000000054	N/A	unknown function
UniRef90	UHGV-0104489_31	UniRef90_D7GWI5	103.0	1.02e-25	N/A	N/A
eggNOG-mapper	UHGV-0104489_31	1232453.BAIF02000057_gene1153	52.4	0.00000378	N/A	N/A
Pfam	UHGV-0104489_31	PF04448	N/A	N/A	N/A	DUF551
UniRef90	UHGV-0104489_32	UniRef90_A0A3R6K7W7	181.0	0	Sigma70_r4_2 domain-containing protein	N/A
Pfam	UHGV-0104489_32	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
structural_annotation	UHGV-0104489_32	PF13384,PF17516,NF001074,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-0104489_35	phrog_7566	114.8	3.3e-34	N/A	unknown function
eggNOG-mapper	UHGV-0104489_35	411902.CLOBOL_05695	102.0	2.04e-27	N/A	N/A
PHROG	UHGV-0104489_36	phrog_17690	63.2	2.4e-18	N/A	unknown function
eggNOG-mapper	UHGV-0104489_36	1235798.C817_03495	72.8	0.0000000000000316	N/A	N/A
KOfam	UHGV-0104489_37	K03469	41.6	0.000000000022	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0104489_37	phrog_531	44.3	0.000000000003	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0104489_37	UniRef90_A0A417BW93	191.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0104489_37	742740.HMPREF9474_04320	85.5	8.2e-20	RNA-DNA hybrid ribonuclease activity	N/A
Pfam	UHGV-0104489_37	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0104489_37	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0104489_37	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
UniRef90	UHGV-0104489_40	UniRef90_A0A3R6SFF1	100.0	3.87e-26	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0104489_40	646529.Desaci_3040	57.4	0.000000000668	TIGRFAM DNA binding domain, excisionase family	N/A
structural_annotation	UHGV-0104489_40	PF12728,TIGR01764	N/A	N/A	N/A	N/A
KOfam	UHGV-0104489_45	K22300	70.4	3.6e-20	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0104489_45	phrog_8	56.8	4.9e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0104489_45	UniRef90_A0A417BWP6	253.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0104489_45	1235802.C823_01933	115.0	4.73e-30	Helix-turn-helix domain	N/A
Pfam	UHGV-0104489_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0104489_45	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0104489_47	K07497	165.6	0	K07497; putative transposase	N/A
PHROG	UHGV-0104489_47	phrog_157	306.8	0	transposase	integration and excision
UniRef90	UHGV-0104489_47	UniRef90_UPI001C8B1781	533.0	0	IS3 family transposase	N/A
eggNOG-mapper	UHGV-0104489_47	1163671.JAGI01000002_gene3185	422.0	0	PFAM Integrase catalytic region	N/A
Pfam	UHGV-0104489_47	PF13276	N/A	N/A	HTH-like domain	HTH_21
Pfam	UHGV-0104489_47	PF00665	N/A	N/A	Integrase core domain	rve
Pfam	UHGV-0104489_47	PF13333	N/A	N/A	Integrase core domain	rve_2
NCBIFam	UHGV-0104489_47	NF033516.0	N/A	N/A	IS3 family transposase	N/A
COG	UHGV-0104489_47	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
structural_annotation	UHGV-0104489_47	PF00665,PF13276,NF033516,COG2801	N/A	N/A	N/A	N/A
KOfam	UHGV-0104489_48	K07483	45.6	9.6e-20	K07483; transposase	N/A
PHROG	UHGV-0104489_48	phrog_151	94.2	1.6e-27	transposase	integration and excision
UniRef90	UHGV-0104489_48	UniRef90_A0A1M5CR09	188.0	0	Transposase and inactivated derivatives	N/A
eggNOG-mapper	UHGV-0104489_48	1235793.C809_03924	206.0	0	Helix-turn-helix domain	N/A
Pfam	UHGV-0104489_48	PF01527	N/A	N/A	Transposase	HTH_Tnp_1
Pfam	UHGV-0104489_48	PF13518	N/A	N/A	Helix-turn-helix domain	HTH_28
COG	UHGV-0104489_48	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0104489_48	PF13518,PF13384,NF038385,COG2963	N/A	N/A	N/A	N/A
KOfam	UHGV-0104489_49	K14059	241.2	0	int; integrase	N/A
PHROG	UHGV-0104489_49	phrog_1	186.6	0	integrase	integration and excision
UniRef90	UHGV-0104489_49	UniRef90_A0A3R6SUQ8	805.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0104489_49	397288.C806_02995	263.0	0	Phage integrase family	N/A
Pfam	UHGV-0104489_49	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0104489_49	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0104489_49	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0104489_49	PF00589,PF14659,MF_01808,NF002331,COG4974	N/A	N/A	N/A	N/A