UHGV-0104668 (vOTU-019505)

Viral Genome: UHGV-0104668

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0104668
vOTU ID	vOTU-019505
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_257275
Associated BioSample	SAMEA3708799
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.41 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9792
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.55
Jumbo phage	No

Genome content
Genome length (bp)	33,449
GC content	33.35%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	94%
Average CDS length (bps)	614.59
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 66.41)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0104668_2	PF07408,MF_01560,NF010187,COG4838	N/A	N/A	N/A	N/A
PHROG	UHGV-0104668_4	phrog_159	44.3	0.0000000000023	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0104668_4	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
KOfam	UHGV-0104668_5	K03427	77.4	2.1e-22	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0104668_5	phrog_5696	264.1	0	N/A	unknown function
UniRef90	UHGV-0104668_5	UniRef90_A0A6N9P8V9	197.0	0	SAM-dependent DNA methyltransferase	N/A
eggNOG-mapper	UHGV-0104668_5	742733.HMPREF9469_05064	196.0	0	N-6 DNA Methylase	N/A
PADLOC	UHGV-0104668_5	MTase_I_00004	46.4	0.00000000000082	Type I methyltransferase	RM
Pfam	UHGV-0104668_5	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0104668_5	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0104668_5	COG0286	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0104668_6	PF18358	N/A	N/A	N/A	N/A
PHROG	UHGV-0104668_9	phrog_2506	64.5	1.3e-18	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0104668_9	UniRef90_A0A5D3IBF8	64.7	0.0000000163	PDDEXK_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0104668_9	1499968.TCA2_4616	66.2	0.000000000999	DNA catabolic process, exonucleolytic	N/A
COG	UHGV-0104668_9	COG1468	N/A	N/A	CRISPR/Cas system-associated exonuclease Cas4, RecB family	N/A
structural_annotation	UHGV-0104668_9	PF01930,MF_03030,TIGR00372,COG5377	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0104668_10	PF01775,MF_00273,NF010188,COG2157	N/A	N/A	N/A	N/A
KOfam	UHGV-0104668_11	K03553	180.6	0	recA; recombination protein RecA	N/A
PHROG	UHGV-0104668_11	phrog_97	172.9	0	UvsX-like recombinase	other
UniRef90	UHGV-0104668_11	UniRef90_UPI001BCFCE00	158.0	1.34945e-42	recombinase RecA	N/A
eggNOG-mapper	UHGV-0104668_11	1172190.M947_08195	147.0	8.42e-39	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	N/A
Pfam	UHGV-0104668_11	PF00154	N/A	N/A	recA bacterial DNA recombination protein	RecA
COG	UHGV-0104668_11	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-0104668_11	PF00154,MF_00268,TIGR02012,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0104668_12	phrog_236	66.2	9.3e-19	nucleotide kinase	other
UniRef90	UHGV-0104668_12	UniRef90_A0A843HZM9	52.4	0.00000399	N/A	N/A
eggNOG-mapper	UHGV-0104668_12	641149.HMPREF9016_01178	59.3	0.00000000275	N/A	N/A
Pfam	UHGV-0104668_12	PF11753	N/A	N/A	N/A	DUF3310
KOfam	UHGV-0104668_13	K02337	754.3	0	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	N/A
PHROG	UHGV-0104668_13	phrog_405	675.3	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0104668_13	UniRef90_A0A843GPT9	869.0	0	DNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-0104668_13	224324.aq_1008	444.0	0	TIGRFAM DNA polymerase III, alpha subunit	N/A
Pfam	UHGV-0104668_13	PF02811	N/A	N/A	PHP domain	PHP
Pfam	UHGV-0104668_13	PF07733	N/A	N/A	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
Pfam	UHGV-0104668_13	PF17657	N/A	N/A	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
Pfam	UHGV-0104668_13	PF14579	N/A	N/A	Helix-hairpin-helix motif	HHH_6
NCBIFam	UHGV-0104668_13	TIGR00594.1	N/A	N/A	DNA polymerase III subunit alpha	N/A
COG	UHGV-0104668_13	COG0587	N/A	N/A	DNA polymerase III, alpha subunit	N/A
structural_annotation	UHGV-0104668_13	PF07733,PF02811,PF17657,PF14579,MF_01902,TIGR00594,COG0587	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0104668_15	PF08804	N/A	N/A	N/A	N/A
KOfam	UHGV-0104668_17	K02316	119.0	3.1e-35	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0104668_17	phrog_47	135.6	5.30001e-40	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0104668_17	UniRef90_A0A843GN62	286.0	0	Toprim domain-containing protein	N/A
eggNOG-mapper	UHGV-0104668_17	360106.CFF8240_1745	78.2	0.000000000000401	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	N/A
PADLOC	UHGV-0104668_17	drt-UG29	45.7	3.4e-25	DRT	DRT
Pfam	UHGV-0104668_17	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
Pfam	UHGV-0104668_17	PF13155	N/A	N/A	Toprim-like	Toprim_2
COG	UHGV-0104668_17	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0104668_17	PF01807,PF13155,MF_00974,TIGR01391,COG0358	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0104668_19	PF06003,MF_01077,NF037951,COG1862	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0104668_22	PF01649	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0104668_25	PF00210,NF007638,COG1528	N/A	N/A	N/A	N/A
PHROG	UHGV-0104668_27	phrog_16490	91.8	7.5e-28	N/A	unknown function
eggNOG-mapper	UHGV-0104668_27	397290.C810_01328	119.0	1.54e-29	N/A	N/A
PHROG	UHGV-0104668_30	phrog_36	42.1	0.000000000019	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0104668_30	PF04545,MF_00674,NF008895,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0104668_33	phrog_1220	153.6	0	head protein	head and packaging
UniRef90	UHGV-0104668_33	UniRef90_R6SMG3	116.0	1.91e-26	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0104668_33	1033738.CAEP01000018_gene3685	127.0	2.58e-31	N/A	N/A
structural_annotation	UHGV-0104668_33	PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-0104668_34	phrog_538	125.7	3.3e-37	minor tail protein	tail
UniRef90	UHGV-0104668_34	UniRef90_A0A1I7FBJ0	119.0	5.99e-26	Virus ReqiPepy6 Gp37-like protein	N/A
eggNOG-mapper	UHGV-0104668_34	573061.Clocel_2427	99.8	8.03e-20	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-0104668_34	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0104668_34	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0104668_35	phrog_33	50.8	0.000000000000038	distal tail protein Dit	tail
UniRef90	UHGV-0104668_35	UniRef90_A0A6N3FT50	91.3	1.2e-17	Phage tail protein	N/A
eggNOG-mapper	UHGV-0104668_35	755731.Clo1100_3575	75.9	0.000000000000609	Phage tail protein	N/A
COG	UHGV-0104668_35	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0104668_35	PF20753,PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0104668_36	phrog_1533	518.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0104668_36	UniRef90_A0A1Q9JFY8	400.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0104668_36	1410670.JHXF01000015_gene2302	401.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0104668_36	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
Pfam	UHGV-0104668_36	PF07443	N/A	N/A	HepA-related protein (HARP)	HARP
NCBIFam	UHGV-0104668_36	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0104668_36	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0104668_36	PF10145,TIGR01760	N/A	N/A	N/A	N/A
PHROG	UHGV-0104668_37	phrog_6280	117.6	8.4e-35	N/A	unknown function
UniRef90	UHGV-0104668_37	UniRef90_UPI0011579C94	109.0	5.09e-28	esterase	N/A
eggNOG-mapper	UHGV-0104668_37	445335.CBN_3078	103.0	1.18e-26	N/A	N/A
PHROG	UHGV-0104668_38	phrog_6686	127.5	8.9e-38	tail tube protein	tail
UniRef90	UHGV-0104668_38	UniRef90_A0A1C6KI12	151.0	1.21002e-41	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0104668_38	748727.CLJU_c31250	84.3	1.26e-16	N/A	N/A
structural_annotation	UHGV-0104668_38	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0104668_39	phrog_7585	79.1	6.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-0104668_39	1196322.A370_04060	68.9	0.000000000000328	N/A	N/A
structural_annotation	UHGV-0104668_39	PF05657,COG5003	N/A	N/A	N/A	N/A
UniRef90	UHGV-0104668_40	UniRef90_UPI00164BA869	73.9	0.0000000000000113	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0104668_40	580331.Thit_1383	74.3	0.00000000000000124	N/A	N/A
structural_annotation	UHGV-0104668_40	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0104668_41	phrog_8435	47.6	0.00000000000027	N/A	unknown function
structural_annotation	UHGV-0104668_41	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0104668_42	phrog_4020	63.5	3e-18	N/A	unknown function
eggNOG-mapper	UHGV-0104668_42	445335.CBN_3083	61.2	0.0000000000312	N/A	N/A
structural_annotation	UHGV-0104668_43	PF07498	N/A	N/A	N/A	N/A
PHROG	UHGV-0104668_44	phrog_29	245.3	0	major head protein	head and packaging
UniRef90	UHGV-0104668_44	UniRef90_UPI00082C04A5	356.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0104668_44	1158612.I580_01912	279.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0104668_44	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0104668_44	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0104668_45	phrog_909	72.8	4e-21	major head protein	head and packaging
UniRef90	UHGV-0104668_45	UniRef90_A0A512PLH0	55.8	0.000000213	Putative structural protein-phage associated	N/A
eggNOG-mapper	UHGV-0104668_45	1158607.UAU_01759	75.1	0.00000000000000154	N/A	N/A
structural_annotation	UHGV-0104668_45	PF02924	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0104668_46	MF_02110	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0104668_47	TIGR00310	N/A	N/A	N/A	N/A
PHROG	UHGV-0104668_49	phrog_1657	179.3	0	head morphogenesis	head and packaging
UniRef90	UHGV-0104668_49	UniRef90_A0A1G9U003	186.0	0	Phage Mu protein F like protein	N/A
eggNOG-mapper	UHGV-0104668_49	748727.CLJU_c31360	165.0	7.00649e-45	Portal protein	N/A
Pfam	UHGV-0104668_49	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0104668_49	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
PHROG	UHGV-0104668_51	phrog_64	112.2	3.8e-33	portal protein	head and packaging
UniRef90	UHGV-0104668_51	UniRef90_A0A843GSM3	341.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0104668_51	536232.CLM_2528	108.0	1.8e-22	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0104668_51	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0104668_51	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A