UHGV-0104708 (vOTU-034026)

Viral Genome: UHGV-0104708

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0104708
vOTU ID	vOTU-034026
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_265080
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.72 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9817
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.98
Jumbo phage	No

Genome content
Genome length (bp)	36,242
GC content	54.94%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	64
CDS density	90%
Average CDS length (bps)	509.58
Total tRNA genes	4
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 85.72)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0104708_3	phrog_3558	193.0	0	tail protein	tail
UniRef90	UHGV-0104708_3	UniRef90_A0A844DGT5	173.0	2.39622e-43	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0104708_3	411460.RUMTOR_00484	166.0	5.02996e-41	Prophage endopeptidase tail	N/A
Pfam	UHGV-0104708_3	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0104708_3	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0104708_3	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-0104708_4	UniRef90_A0A7G9WF98	92.0	8.2e-20	MtfA protein	N/A
structural_annotation	UHGV-0104708_4	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0104708_5	phrog_9959	95.0	4.9e-28	tail length tape measure protein	tail
UniRef90	UHGV-0104708_5	UniRef90_UPI001C038824	671.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-0104708_5	1492737.FEM08_12070	154.0	1.42e-36	tape measure	N/A
Pfam	UHGV-0104708_5	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0104708_5	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0104708_5	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0104708_5	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0104708_7	phrog_885	71.6	1e-20	major tail protein	tail
eggNOG-mapper	UHGV-0104708_7	1111121.HMPREF1247_0789	152.0	2.8026e-44	N/A	N/A
structural_annotation	UHGV-0104708_7	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0104708_8	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0104708_9	phrog_17977	43.4	0.0000000000056	N/A	unknown function
UniRef90	UHGV-0104708_9	UniRef90_A0A844DHJ8	121.0	4.02e-33	Phage head closure protein	N/A
structural_annotation	UHGV-0104708_9	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0104708_11	phrog_247	203.6	0	major head protein	head and packaging
UniRef90	UHGV-0104708_11	UniRef90_UPI001BA5448B	238.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0104708_11	33035.JPJF01000106_gene3132	356.0	0	N/A	N/A
Pfam	UHGV-0104708_11	PF20036	N/A	N/A	Major capsid protein 13-like	Gp13-like
structural_annotation	UHGV-0104708_11	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0104708_12	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0104708_14	phrog_5	49.6	0.00000000000011	tail completion or Neck1 protein	connector
UniRef90	UHGV-0104708_14	UniRef90_A0A6N7TNP6	299.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0104708_14	1123309.AQYB01000018_gene814	95.5	3.52e-23	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0104708_14	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0104708_14	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0104708_15	phrog_8680	178.4	0	N/A	unknown function
UniRef90	UHGV-0104708_15	UniRef90_A0A844D688	344.0	0	N/A	N/A
eggNOG-mapper	UHGV-0104708_15	1423790.BN53_04265	159.0	4.2039e-45	Belongs to the N(4) N(6)-methyltransferase family	N/A
Pfam	UHGV-0104708_15	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-0104708_15	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
PHROG	UHGV-0104708_18	phrog_2468	80.1	1.7e-23	head morphogenesis	head and packaging
UniRef90	UHGV-0104708_18	UniRef90_A0A6N7TLR7	642.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0104708_18	1504822.CCNO01000013_gene286	113.0	9.73e-25	cell adhesion	N/A
Pfam	UHGV-0104708_18	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0104708_18	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0104708_18	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0104708_20	phrog_64	122.9	1.4e-36	portal protein	head and packaging
UniRef90	UHGV-0104708_20	UniRef90_A0A6N7TNT3	892.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0104708_20	642492.Clole_2764	85.1	0.00000000000000723	phage portal protein, SPP1	N/A
Pfam	UHGV-0104708_20	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0104708_20	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0104708_21	K06909	140.0	2.50006e-41	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0104708_21	phrog_10250	173.0	0	N/A	unknown function
UniRef90	UHGV-0104708_21	UniRef90_A0A844D8I4	852.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0104708_21	411490.ANACAC_00783	494.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0104708_21	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0104708_21	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0104708_21	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0104708_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0104708_21	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0104708_22	UniRef90_UPI0018CC2891	113.0	3.24e-29	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0104708_22	1235790.C805_00037	111.0	3.55e-29	N/A	N/A
structural_annotation	UHGV-0104708_22	PF04218	N/A	N/A	N/A	N/A
PHROG	UHGV-0104708_23	phrog_36	54.3	0.0000000000000028	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0104708_23	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0104708_25	K01160	58.2	2.7e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0104708_25	phrog_34	58.1	2e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0104708_25	UniRef90_A0A6N7TND6	215.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0104708_25	875454.BAEW01000002_gene491	137.0	5.38001e-40	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0104708_25	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0104708_25	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0104708_25	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0104708_26	phrog_757	180.7	0	DNA methyltransferase	other
UniRef90	UHGV-0104708_26	UniRef90_A0A417JTT5	297.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0104708_26	1095750.HMPREF9970_0173	228.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0104708_26	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0104708_26	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0104708_28	PF01775,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0104708_29	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0104708_30	K02086	67.5	2.2e-19	dnaD; DNA replication protein	N/A
PHROG	UHGV-0104708_30	phrog_186	74.3	1.9e-21	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0104708_30	UniRef90_A0A6N7TLH4	258.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0104708_30	877411.JMMA01000002_gene2292	69.7	0.0000000000383	N/A	N/A
Pfam	UHGV-0104708_30	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0104708_30	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0104708_30	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-0104708_30	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
KOfam	UHGV-0104708_31	K03111	146.9	2.20004e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0104708_31	phrog_44	145.7	2.49431e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0104708_31	UniRef90_D4K451	277.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0104708_31	718252.FP2_06770	277.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0104708_31	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0104708_31	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0104708_31	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0104708_31	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0104708_31	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0104708_32	phrog_561	112.2	4.9e-33	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0104708_32	UniRef90_UPI0011C8A287	146.0	1.75e-40	recombinase RecT	N/A
eggNOG-mapper	UHGV-0104708_32	33035.JPJF01000071_gene4462	147.0	2.20004e-41	N/A	N/A
structural_annotation	UHGV-0104708_32	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0104708_34	PF06718	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0104708_38	PF10743,NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-0104708_39	phrog_4433	135.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0104708_39	394503.Ccel_3068	116.0	9.31e-30	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0104708_39	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
UniRef90	UHGV-0104708_40	UniRef90_A0A843GUM6	58.9	0.00000000105	Membrane lipoprotein lipid attachment site-containing protein	N/A
eggNOG-mapper	UHGV-0104708_40	1121865.OMW_01950	77.0	1.39e-17	N/A	N/A
structural_annotation	UHGV-0104708_40	PF17516,NF007197	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0104708_41	760568.Desku_0919	96.3	6.35e-22	N/A	N/A
structural_annotation	UHGV-0104708_41	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
KOfam	UHGV-0104708_42	K07741	89.3	1.2e-25	antB; anti-repressor protein	N/A
PHROG	UHGV-0104708_42	phrog_63	175.7	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0104708_42	UniRef90_A0A2J4JRR8	405.0	0	Phage regulatory protein/antirepressor Ant	N/A
eggNOG-mapper	UHGV-0104708_42	1423816.BACQ01000027_gene970	243.0	0	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-0104708_42	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
Pfam	UHGV-0104708_42	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
NCBIFam	UHGV-0104708_42	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0104708_42	COG3645	N/A	N/A	Phage antirepressor protein YoqD, KilAC domain	N/A
structural_annotation	UHGV-0104708_42	PF03374,PF09669,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
PHROG	UHGV-0104708_45	phrog_8	43.6	0.0000000000068	transcriptional regulator	transcription regulation
UniRef90	UHGV-0104708_45	UniRef90_UPI001C009F10	120.0	3.25e-34	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0104708_45	1268072.PSAB_01325	53.1	0.0000000158	Transcriptional regulator	N/A
Pfam	UHGV-0104708_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0104708_45	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0104708_45	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0104708_46	phrog_8	52.0	0.000000000000017	transcriptional regulator	transcription regulation
UniRef90	UHGV-0104708_46	UniRef90_UPI001C020D87	88.6	2.08e-20	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0104708_46	665950.HMPREF1025_02562	56.2	0.0000000158	TRANSCRIPTIONal	N/A
Pfam	UHGV-0104708_46	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0104708_46	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0104708_46	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0104708_49	phrog_4980	112.4	2.1e-33	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0104708_49	UniRef90_UPI000F643789	84.3	4.2e-17	Ltp family lipoprotein	N/A
eggNOG-mapper	UHGV-0104708_49	428127.EUBDOL_01530	74.7	0.000000000000243	Host cell surface-exposed lipoprotein	N/A
Pfam	UHGV-0104708_49	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-0104708_49	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-0104708_49	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0104708_49	PF02631,MF_01114,NF001062,COG2137	N/A	N/A	N/A	N/A
UniRef90	UHGV-0104708_52	UniRef90_A0A6N7TLT0	207.0	0	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0104708_52	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-0104708_52	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0104708_53	K14059	138.0	1.3e-40	int; integrase	N/A
PHROG	UHGV-0104708_53	phrog_1	164.8	0	integrase	integration and excision
UniRef90	UHGV-0104708_53	UniRef90_A0A6N7TNQ4	712.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0104708_53	411471.SUBVAR_05137	263.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0104708_53	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0104708_53	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0104708_53	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0104708_55	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0104708_56	phrog_20016	205.4	0	N/A	unknown function
UniRef90	UHGV-0104708_56	UniRef90_A0A285PT46	217.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0104708_56	1226322.HMPREF1545_00077	185.0	0	N/A	N/A
structural_annotation	UHGV-0104708_56	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0104708_57	phrog_16490	198.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0104708_57	397290.C810_01328	126.0	1e-31	N/A	N/A
PHROG	UHGV-0104708_58	phrog_22984	56.3	3.8e-16	N/A	unknown function
PHROG	UHGV-0104708_59	phrog_21718	89.0	6e-26	N/A	unknown function
eggNOG-mapper	UHGV-0104708_59	397290.C810_05210	80.5	5.76e-17	N/A	N/A
PHROG	UHGV-0104708_60	phrog_3754	98.0	1e-28	N/A	unknown function
eggNOG-mapper	UHGV-0104708_60	1235790.C805_00054	109.0	3.14e-29	N/A	N/A
UniRef90	UHGV-0104708_61	UniRef90_UPI0004C44073	63.9	0.000000000423	helix-turn-helix domain-containing protein	N/A
COG	UHGV-0104708_63	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0104708_63	PF13560,NF040522	N/A	N/A	N/A	N/A