UHGV-0105364 (vOTU-139896)

Viral Genome: UHGV-0105364

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0105364
vOTU ID	vOTU-139896
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_235613
Associated BioSample	SAMEA3708696
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.94 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9739
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.38
Jumbo phage	No

Genome content
Genome length (bp)	38,959
GC content	40.91%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	55
CDS density	91%
Average CDS length (bps)	643.91
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 88.94)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0105364_1	K00571	124.0	1.8e-36	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0105364_1	phrog_18293	100.7	9.2e-30	methyltransferase	other
UniRef90	UHGV-0105364_1	UniRef90_A0A2N0UI24	360.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0105364_1	411483.FAEPRAA2165_03404	152.0	2.38221e-44	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0105364_1	MTase_II_00157	104.0	7.6e-32	Type II methyltransferase	RM
Pfam	UHGV-0105364_1	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0105364_1	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0105364_1	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
KOfam	UHGV-0105364_2	K01447	56.0	9e-16	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0105364_2	phrog_20388	305.7	0	endolysin	lysis
UniRef90	UHGV-0105364_2	UniRef90_A0A374N1L8	545.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0105364_2	1203606.HMPREF1526_00253	315.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0105364_2	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0105364_2	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0105364_2	PF01510,PF01476,PF15591,MF_02014,MF_04111,MF_01354,NF008758,NF010723,TIGR00405,COG3023,COG5004,COG2139	N/A	N/A	N/A	N/A
PHROG	UHGV-0105364_3	phrog_322	79.1	5.7e-23	N/A	unknown function
UniRef90	UHGV-0105364_3	UniRef90_UPI000F7ADC69	114.0	3.31e-31	Gp49 family protein	N/A
eggNOG-mapper	UHGV-0105364_3	1445809.A0A0A7AR29_9CAUD	105.0	1.49e-28	Phage protein (N4 Gp49/phage Sf6 gene 66) family	N/A
Pfam	UHGV-0105364_3	PF13876	N/A	N/A	N/A	Phage_gp49_66
dbAPIS	UHGV-0105364_3	APIS043	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0105364_3	PF13876	N/A	N/A	N/A	N/A
PHROG	UHGV-0105364_4	phrog_199	74.5	1.3e-21	holin	lysis
UniRef90	UHGV-0105364_4	UniRef90_A0A2N0ULW7	266.0	0	Holin	N/A
eggNOG-mapper	UHGV-0105364_4	1160721.RBI_I01565	140.0	7.09001e-41	Bacteriophage holin family	N/A
Pfam	UHGV-0105364_4	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0105364_4	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0105364_4	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0105364_4	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0105364_6	phrog_5302	279.3	0	tail protein	tail
UniRef90	UHGV-0105364_6	UniRef90_A0A373XLZ6	1024.0	0	N/A	N/A
eggNOG-mapper	UHGV-0105364_6	742740.HMPREF9474_02337	307.0	0	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0105364_6	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-0105364_6	COG1262	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0105364_7	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0105364_8	phrog_1194	61.0	1.8e-17	N/A	unknown function
eggNOG-mapper	UHGV-0105364_8	397290.C810_05238	92.8	2.89e-22	N/A	N/A
Pfam	UHGV-0105364_8	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0105364_8	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0105364_9	phrog_1535	484.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0105364_9	UniRef90_A0A2N0ULX3	2068.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0105364_9	33035.JPJF01000093_gene2243	349.0	0	phage tail tape measure protein	N/A
COG	UHGV-0105364_9	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0105364_9	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0105364_11	phrog_706	139.9	1.49995e-41	N/A	unknown function
UniRef90	UHGV-0105364_11	UniRef90_A0A2N0ULW2	366.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0105364_11	1160721.RBI_II00530	213.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0105364_11	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0105364_11	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0105364_12	phrog_11299	135.5	2.8e-40	N/A	unknown function
eggNOG-mapper	UHGV-0105364_12	1298920.KI911353_gene2067	75.1	0.00000000000000346	N/A	N/A
structural_annotation	UHGV-0105364_12	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0105364_13	phrog_3099	148.8	2.38221e-44	N/A	unknown function
eggNOG-mapper	UHGV-0105364_13	1160721.RBI_II00532	237.0	0	N/A	N/A
structural_annotation	UHGV-0105364_13	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0105364_14	phrog_3266	103.9	1.1e-30	tail completion	connector
eggNOG-mapper	UHGV-0105364_14	1449050.JNLE01000003_gene3885	146.0	3.26503e-43	N/A	N/A
structural_annotation	UHGV-0105364_14	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0105364_15	phrog_556	118.7	1.9e-35	minor head protein	head and packaging
UniRef90	UHGV-0105364_15	UniRef90_UPI00189BC4F9	184.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0105364_15	1449050.JNLE01000003_gene3886	177.0	0	N/A	N/A
Pfam	UHGV-0105364_15	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0105364_15	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0105364_16	phrog_3366	73.6	2.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-0105364_16	1449050.JNLE01000003_gene3887	89.4	4.45e-21	N/A	N/A
Pfam	UHGV-0105364_16	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0105364_16	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0105364_17	phrog_541	80.8	1.6e-23	head-tail adaptor	connector
UniRef90	UHGV-0105364_17	UniRef90_A0A371AQT0	109.0	1.94e-28	N/A	N/A
eggNOG-mapper	UHGV-0105364_17	1449050.JNLE01000003_gene3888	82.0	1.7e-18	N/A	N/A
PHROG	UHGV-0105364_18	phrog_544	291.1	0	major head protein	head and packaging
UniRef90	UHGV-0105364_18	UniRef90_UPI000F53CC4F	475.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0105364_18	936580.HMPREF1516_0718	329.0	0	N/A	N/A
NCBIFam	UHGV-0105364_18	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0105364_18	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0105364_19	phrog_194	95.4	7.7e-28	head scaffolding protein	head and packaging
UniRef90	UHGV-0105364_19	UniRef90_A0A2N0ULW9	298.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0105364_19	742765.HMPREF9457_02126	160.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0105364_19	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0105364_19	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0105364_20	phrog_2616	46.1	0.000000000001	N/A	unknown function
structural_annotation	UHGV-0105364_20	PF01281	N/A	N/A	N/A	N/A
PHROG	UHGV-0105364_21	phrog_478	129.3	1.5e-38	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0105364_21	UniRef90_A0A285PT53	146.0	1.03976e-42	Prokaryotic membrane lipoprotein lipid attachment site profile	N/A
eggNOG-mapper	UHGV-0105364_21	478749.BRYFOR_08526	148.0	2.24208e-44	N/A	N/A
PHROG	UHGV-0105364_23	phrog_581	318.3	0	minor head protein	head and packaging
UniRef90	UHGV-0105364_23	UniRef90_A0A2N0ULU5	738.0	0	Putative ADP-ribosyltransferase Certhrax	N/A
eggNOG-mapper	UHGV-0105364_23	658655.HMPREF0988_02563	374.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0105364_23	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0105364_23	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0105364_24	phrog_533	330.5	0	portal protein	head and packaging
UniRef90	UHGV-0105364_24	UniRef90_A0A2N0ULU9	859.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0105364_24	1304866.K413DRAFT_3035	472.0	0	N/A	N/A
structural_annotation	UHGV-0105364_24	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0105364_25	K06909	395.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0105364_25	phrog_3717	146.3	5.60519e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0105364_25	UniRef90_A0A2N0ULW5	1029.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0105364_25	411461.DORFOR_01162	619.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0105364_25	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0105364_25	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0105364_25	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0105364_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0105364_25	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0105364_28	UniRef90_UPI000E4DC4DA	136.0	1.73e-38	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0105364_28	PF15597	N/A	N/A	N/A	N/A
PHROG	UHGV-0105364_29	phrog_8684	99.6	2e-30	N/A	unknown function
UniRef90	UHGV-0105364_29	UniRef90_A0A374DV44	181.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0105364_29	1458852.A0A059T7V5_9CAUD	79.7	3.34e-17	YopX protein	N/A
Pfam	UHGV-0105364_29	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0105364_29	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0105364_29	PF09643,TIGR01671	N/A	N/A	N/A	N/A
KOfam	UHGV-0105364_34	K02314	226.3	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0105364_34	phrog_19	247.7	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0105364_34	UniRef90_A0A1C6JHY9	260.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0105364_34	1280689.AUJC01000011_gene1502	151.0	1.51e-38	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0105364_34	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0105364_34	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0105364_34	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0105364_34	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0105364_35	phrog_2514	76.9	2.6e-22	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0105364_35	445974.CLORAM_02950	106.0	3.55e-25	N/A	N/A
structural_annotation	UHGV-0105364_35	PF10771,MF_01177,TIGR01714,COG5529	N/A	N/A	N/A	N/A
PHROG	UHGV-0105364_36	phrog_3490	129.7	1.9e-38	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0105364_36	UniRef90_UPI000C0868DD	223.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0105364_36	476272.RUMHYD_01740	214.0	0	ERCC4 domain	N/A
Pfam	UHGV-0105364_36	PF02732	N/A	N/A	ERCC4 domain	ERCC4
COG	UHGV-0105364_36	COG1948	N/A	N/A	ERCC4-type crossover junction endonuclease	N/A
structural_annotation	UHGV-0105364_36	PF02732,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-0105364_37	phrog_18107	89.8	4e-26	N/A	unknown function
eggNOG-mapper	UHGV-0105364_37	476272.RUMHYD_02831	166.0	0	N/A	N/A
structural_annotation	UHGV-0105364_37	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0105364_38	phrog_2872	214.7	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0105364_38	UniRef90_UPI000C080C89	253.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0105364_38	1415774.U728_1119	245.0	0	AAA domain	N/A
structural_annotation	UHGV-0105364_38	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
UniRef90	UHGV-0105364_44	UniRef90_A0A2N0ULT9	138.0	1.46996e-41	DNA binding domain, excisionase family	N/A
eggNOG-mapper	UHGV-0105364_44	1283300.ATXB01000001_gene1737	47.0	0.0000034	DNA excision	N/A
Pfam	UHGV-0105364_44	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0105364_44	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-0105364_44	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-0105364_44	PF12728,NF040990,COG3311	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0105364_48	PF11614,TIGR02588,COG2847	N/A	N/A	N/A	N/A
PHROG	UHGV-0105364_51	phrog_3	40.4	0.00000000011	transcriptional repressor	transcription regulation
UniRef90	UHGV-0105364_51	UniRef90_UPI001C11D88B	72.4	0.00000000000000222	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0105364_51	999411.HMPREF1092_00882	56.2	0.00000000117	Helix-turn-helix	N/A
Pfam	UHGV-0105364_51	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0105364_51	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0105364_52	K01356	109.3	6e-32	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0105364_52	phrog_4	124.3	1.2e-36	transcriptional repressor	transcription regulation
UniRef90	UHGV-0105364_52	UniRef90_UPI0015F84BF4	303.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0105364_52	246199.CUS_5911	135.0	1.56e-36	N/A	N/A
Pfam	UHGV-0105364_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0105364_52	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0105364_52	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0105364_52	PF00717,PF12844,MF_00015,TIGR00498,TIGR03070,COG1974,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0105364_53	phrog_5978	124.2	9.7e-37	N/A	unknown function
UniRef90	UHGV-0105364_53	UniRef90_A0A2N0UXR1	795.0	0	Adenosine monophosphate-protein transferase SoFic	N/A
eggNOG-mapper	UHGV-0105364_53	936375.HMPREF1152_1541	360.0	0	Filamentation induced by cAMP protein fic	N/A
Pfam	UHGV-0105364_53	PF02661	N/A	N/A	Fic/DOC family	Fic
Pfam	UHGV-0105364_53	PF13412	N/A	N/A	Winged helix-turn-helix DNA-binding	HTH_24
COG	UHGV-0105364_53	COG3177	N/A	N/A	Fic family protein	N/A
structural_annotation	UHGV-0105364_53	PF07183,MF_01911,NF040876,COG3177	N/A	N/A	N/A	N/A
KOfam	UHGV-0105364_54	K14059	215.9	0	int; integrase	N/A
PHROG	UHGV-0105364_54	phrog_1	205.3	0	integrase	integration and excision
UniRef90	UHGV-0105364_54	UniRef90_A0A373XME4	775.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0105364_54	428125.CLOLEP_02743	300.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0105364_54	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0105364_54	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0105364_54	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0105364_55	K03088	93.6	3e-27	rpoE; RNA polymerase sigma-70 factor, ECF subfamily	N/A
PHROG	UHGV-0105364_55	phrog_1740	56.3	4.9e-16	RNA polymerase sigma factor	transcription regulation
UniRef90	UHGV-0105364_55	UniRef90_UPI0015F455B4	747.0	0	sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0105364_55	411474.COPEUT_02341	155.0	1.3e-37	DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog	N/A
Pfam	UHGV-0105364_55	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
Pfam	UHGV-0105364_55	PF07638	N/A	N/A	ECF sigma factor	Sigma70_ECF
NCBIFam	UHGV-0105364_55	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-0105364_55	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0105364_55	PF07638,MF_00245,TIGR02954,COG1595	N/A	N/A	N/A	N/A