UHGV-0106027 (vOTU-130107)

Viral Genome: UHGV-0106027

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0106027
vOTU ID	vOTU-130107
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_239679
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.87 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9782
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.76
Jumbo phage	No

Genome content
Genome length (bp)	44,320
GC content	40.82%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	66
CDS density	83%
Average CDS length (bps)	556.23
Total tRNA genes	4
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 73.87)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0106027_1	phrog_17196	122.6	1.90002e-41	kinase	other
UniRef90	UHGV-0106027_1	UniRef90_A0A3R6GQJ1	498.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0106027_1	1235790.C805_00090	192.0	0	N/A	N/A
structural_annotation	UHGV-0106027_1	PF13619	N/A	N/A	N/A	N/A
PHROG	UHGV-0106027_3	phrog_18190	595.3	0	N/A	unknown function
UniRef90	UHGV-0106027_3	UniRef90_UPI001C01E293	1157.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0106027_3	397290.C810_01435	448.0	0	N/A	N/A
Pfam	UHGV-0106027_3	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-0106027_3	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0106027_4	phrog_1194	66.1	5e-19	N/A	unknown function
eggNOG-mapper	UHGV-0106027_4	483218.BACPEC_01144	68.9	0.000000000000511	N/A	N/A
Pfam	UHGV-0106027_4	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0106027_4	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0106027_6	phrog_373	83.1	2.8e-24	anti-repressor	transcription regulation
UniRef90	UHGV-0106027_6	UniRef90_UPI00067F36E0	347.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0106027_6	1235793.C809_02221	131.0	7.71e-35	Phage regulatory protein Rha (Phage_pRha)	N/A
Pfam	UHGV-0106027_6	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
COG	UHGV-0106027_6	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0106027_6	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
PHROG	UHGV-0106027_7	phrog_463	254.1	0	anti-repressor	transcription regulation
UniRef90	UHGV-0106027_7	UniRef90_A0A1Q6KK61	296.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0106027_7	596315.HMPREF0634_0237	183.0	0	BRO family, N-terminal domain protein	N/A
Pfam	UHGV-0106027_7	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0106027_7	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0106027_7	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0106027_7	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
UniRef90	UHGV-0106027_10	UniRef90_R7B8I7	86.3	3.44e-21	Ribbon-helix-helix protein CopG family	N/A
eggNOG-mapper	UHGV-0106027_10	663952.SDD27957_09060	49.3	0.000000271	N/A	N/A
Pfam	UHGV-0106027_10	PF12651	N/A	N/A	Ribbon-helix-helix domain	RHH_3
structural_annotation	UHGV-0106027_10	PF12651,NF041793,COG4710	N/A	N/A	N/A	N/A
UniRef90	UHGV-0106027_12	UniRef90_A0A1Q6KJY9	353.0	0	zinc_ribbon_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0106027_12	742740.HMPREF9474_01531	59.3	0.0000000113	zinc-ribbon domain	N/A
Pfam	UHGV-0106027_12	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
structural_annotation	UHGV-0106027_12	PF02701,NF041869	N/A	N/A	N/A	N/A
PHROG	UHGV-0106027_13	phrog_1535	155.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0106027_13	UniRef90_A0A2H4J4V9	275.0	0	Putative Tmp	N/A
eggNOG-mapper	UHGV-0106027_13	1298920.KI911353_gene2649	229.0	0	tape measure	N/A
COG	UHGV-0106027_13	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
KOfam	UHGV-0106027_14	K07273	178.0	0	acm; lysozyme	N/A
PHROG	UHGV-0106027_14	phrog_291	129.3	3.6e-38	endolysin	lysis
UniRef90	UHGV-0106027_14	UniRef90_A0A1Q6KJN7	673.0	0	LysM domain-containing protein	N/A
eggNOG-mapper	UHGV-0106027_14	1235800.C819_00458	210.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0106027_14	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0106027_14	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0106027_14	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0106027_14	PF01183,PF01476,TIGR02899,NF007360,COG3757,COG1388	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0106027_17	476272.RUMHYD_01968	190.0	0	N/A	N/A
structural_annotation	UHGV-0106027_17	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0106027_18	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0106027_19	phrog_419	106.9	2.3e-31	N/A	unknown function
UniRef90	UHGV-0106027_19	UniRef90_A0A4U9RIR3	130.0	2.09e-37	N/A	N/A
eggNOG-mapper	UHGV-0106027_19	476272.RUMHYD_03324	132.0	2.59e-39	N/A	N/A
structural_annotation	UHGV-0106027_19	PF14083	N/A	N/A	N/A	N/A
UniRef90	UHGV-0106027_20	UniRef90_UPI001BBD4500	161.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0106027_20	397290.C810_01411	205.0	0	N/A	N/A
structural_annotation	UHGV-0106027_20	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0106027_21	1298920.KI911353_gene2656	57.0	0.0000000335	N/A	N/A
structural_annotation	UHGV-0106027_21	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0106027_22	phrog_18218	133.7	5.9e-40	N/A	unknown function
UniRef90	UHGV-0106027_22	UniRef90_A0A8D9PGR5	177.0	0	Holin	N/A
eggNOG-mapper	UHGV-0106027_22	411902.CLOBOL_03424	79.0	1.39e-17	N/A	N/A
structural_annotation	UHGV-0106027_22	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0106027_23	phrog_1863	52.5	0.0000000000000047	N/A	unknown function
eggNOG-mapper	UHGV-0106027_23	1232452.BAIB02000007_gene1606	67.8	0.000000000000365	N/A	N/A
eggNOG-mapper	UHGV-0106027_24	397290.C810_01402	67.8	0.000000000000576	N/A	N/A
Pfam	UHGV-0106027_24	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
UniRef90	UHGV-0106027_25	UniRef90_A0A416G2T8	72.8	0.0000000000000036	Rho_N domain-containing protein	N/A
structural_annotation	UHGV-0106027_25	PF21169	N/A	N/A	N/A	N/A
PHROG	UHGV-0106027_26	phrog_29	160.9	0	major head protein	head and packaging
UniRef90	UHGV-0106027_26	UniRef90_A0A173UF26	637.0	0	Phage major capsid protein E	N/A
eggNOG-mapper	UHGV-0106027_26	1118054.CAGW01000102_gene4700	168.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0106027_26	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0106027_26	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0106027_27	phrog_909	79.7	3.2e-23	major head protein	head and packaging
UniRef90	UHGV-0106027_27	UniRef90_R7BGI8	171.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0106027_27	1536772.R70723_06665	50.4	0.00000165	N/A	N/A
UniRef90	UHGV-0106027_28	UniRef90_R6C0B6	143.0	5.30001e-40	Phage capsid scaffolding protein	N/A
PHROG	UHGV-0106027_29	phrog_64	177.8	0	portal protein	head and packaging
UniRef90	UHGV-0106027_29	UniRef90_A0A3R6ASF4	944.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0106027_29	1298920.KI911353_gene2663	462.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0106027_29	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0106027_29	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0106027_30	phrog_9529	123.6	1.4e-36	N/A	unknown function
UniRef90	UHGV-0106027_30	UniRef90_UPI00189EF47B	144.0	5.94e-39	N/A	N/A
Pfam	UHGV-0106027_30	PF04480	N/A	N/A	N/A	DUF559
COG	UHGV-0106027_30	COG2852	N/A	N/A	Very-short-patch-repair endonuclease	N/A
structural_annotation	UHGV-0106027_30	PF04480,NF007294,COG2852	N/A	N/A	N/A	N/A
PHROG	UHGV-0106027_31	phrog_36	63.0	6.4e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0106027_31	UniRef90_A0A352SH29	131.0	2.54e-37	RNA polymerase subunit sigma-70 (Fragment)	N/A
eggNOG-mapper	UHGV-0106027_31	97138.C820_00772	80.1	2.73e-17	sigma factor activity	N/A
COG	UHGV-0106027_31	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0106027_31	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
PHROG	UHGV-0106027_32	phrog_38	144.2	9.69699e-43	terminase large subunit	head and packaging
UniRef90	UHGV-0106027_32	UniRef90_A0A352SH30	1036.0	0	Terminase_6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0106027_32	397290.C810_01390	675.0	0	chromosome segregation	N/A
Pfam	UHGV-0106027_32	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
COG	UHGV-0106027_32	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0106027_32	PF17289,PF04466,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0106027_33	PF10694	N/A	N/A	N/A	N/A
PHROG	UHGV-0106027_35	phrog_25639	58.5	9e-17	N/A	unknown function
eggNOG-mapper	UHGV-0106027_35	397290.C810_01381	60.1	0.000000000027	N/A	N/A
structural_annotation	UHGV-0106027_38	PF18895,NF009256	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0106027_42	658655.HMPREF0988_00895	108.0	2.35e-27	N/A	N/A
eggNOG-mapper	UHGV-0106027_43	742738.HMPREF9460_04058	110.0	8.06e-27	N/A	N/A
eggNOG-mapper	UHGV-0106027_44	1304866.K413DRAFT_4686	76.3	1.04e-17	N/A	N/A
PHROG	UHGV-0106027_46	phrog_314	42.1	0.000000000018	homing endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0106027_46	UniRef90_A0A2M9T7S9	70.1	0.000000000000499	GIY-YIG domain-containing protein	N/A
eggNOG-mapper	UHGV-0106027_46	1527469.A0A076G735_9CAUD	55.1	0.000000425	nucleic acid binding	N/A
Pfam	UHGV-0106027_46	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
structural_annotation	UHGV-0106027_46	PF19835,TIGR01453	N/A	N/A	N/A	N/A
KOfam	UHGV-0106027_47	K07727	45.4	0.0000000000019	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-0106027_47	UniRef90_UPI001D08D759	142.0	3.79752e-43	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0106027_47	1235790.C805_00736	118.0	5.39e-34	Transcriptional regulator	N/A
Pfam	UHGV-0106027_47	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0106027_47	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0106027_47	PF13443,NF000090,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0106027_49	NF008062,COG2980	N/A	N/A	N/A	N/A
PHROG	UHGV-0106027_52	phrog_1233	48.9	0.00000000000012	N/A	unknown function
eggNOG-mapper	UHGV-0106027_52	658655.HMPREF0988_00914	135.0	7.98999e-40	N/A	N/A
structural_annotation	UHGV-0106027_52	PF13058	N/A	N/A	N/A	N/A
PHROG	UHGV-0106027_53	phrog_373	99.7	3.1e-29	anti-repressor	transcription regulation
UniRef90	UHGV-0106027_53	UniRef90_UPI001C02FA3A	298.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0106027_53	97139.C824_03355	140.0	3.68e-39	Phage regulatory protein	N/A
Pfam	UHGV-0106027_53	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-0106027_53	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0106027_53	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0106027_53	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
UniRef90	UHGV-0106027_55	UniRef90_UPI001C009B96	110.0	8.35e-31	CopG family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0106027_55	478749.BRYFOR_07643	70.1	0.00000000000000156	N/A	N/A
structural_annotation	UHGV-0106027_55	PF12651,NF041793,COG4710	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0106027_56	658655.HMPREF0988_00915	134.0	3.9e-36	N/A	N/A
PHROG	UHGV-0106027_57	phrog_20016	230.2	0	N/A	unknown function
UniRef90	UHGV-0106027_57	UniRef90_A0A285PT46	177.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0106027_57	397290.C810_05214	241.0	0	N/A	N/A
structural_annotation	UHGV-0106027_57	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0106027_59	phrog_16490	184.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0106027_59	397290.C810_01328	135.0	1.95e-35	N/A	N/A
eggNOG-mapper	UHGV-0106027_60	658655.HMPREF0988_00918	53.1	0.0000000182	N/A	N/A
PHROG	UHGV-0106027_61	phrog_21718	42.6	0.0000000000088	N/A	unknown function
eggNOG-mapper	UHGV-0106027_61	658655.HMPREF0988_00919	141.0	1.8e-40	N/A	N/A
structural_annotation	UHGV-0106027_61	NF033819	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0106027_62	658655.HMPREF0988_00920	45.4	0.00000665	N/A	N/A
eggNOG-mapper	UHGV-0106027_63	585394.RHOM_00300	274.0	0	Lysozyme inhibitor LprI	N/A
COG	UHGV-0106027_63	COG3755	N/A	N/A	N/A	N/A
KOfam	UHGV-0106027_64	K21900	78.9	8.3e-23	cysL; LysR family transcriptional regulator, transcriptional activator of the cysJI operon	N/A
UniRef90	UHGV-0106027_64	UniRef90_A0A1H5TDR3	168.0	0	DNA-binding transcriptional regulator, LysR family	N/A
eggNOG-mapper	UHGV-0106027_64	246199.CUS_4399	159.0	8.40779e-45	LysR substrate binding domain	N/A
COG	UHGV-0106027_64	COG0583	N/A	N/A	DNA-binding transcriptional regulator, LysR family	N/A
KOfam	UHGV-0106027_65	K19789	75.6	1.9e-27	radD; DNA repair protein RadD	N/A
PHROG	UHGV-0106027_65	phrog_16	97.8	8.3e-39	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0106027_65	UniRef90_A0A0M6W9J6	1706.0	0	Helicase ATP-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0106027_65	1256908.HMPREF0373_03428	1720.0	0	N/A	N/A
Pfam	UHGV-0106027_65	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
COG	UHGV-0106027_65	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
eggNOG-mapper	UHGV-0106027_66	585394.RHOM_13190	142.0	4.38004e-41	N/A	N/A
Pfam	UHGV-0106027_66	PF20069	N/A	N/A	N/A	DUF6465