UHGV-0106100 (vOTU-125560)

Viral Genome: UHGV-0106100

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0106100
vOTU ID	vOTU-125560
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_249799
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.79 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9786
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.58
Jumbo phage	No

Genome content
Genome length (bp)	42,186
GC content	37.88%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	63
CDS density	85%
Average CDS length (bps)	571.48
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 81.79)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0106100_1	K01447	63.9	2.9e-18	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0106100_1	phrog_833	201.5	0	endolysin	lysis
UniRef90	UHGV-0106100_1	UniRef90_A0A396PS23	630.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0106100_1	411460.RUMTOR_02101	509.0	0	COG NOG33632 non supervised orthologous group	N/A
Pfam	UHGV-0106100_1	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0106100_1	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0106100_1	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0106100_2	phrog_1129	80.6	1.2e-23	holin	lysis
UniRef90	UHGV-0106100_2	UniRef90_UPI001BC82F37	127.0	3.82e-36	phage holin family protein	N/A
eggNOG-mapper	UHGV-0106100_2	411460.RUMTOR_01325	119.0	1.01e-33	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0106100_2	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0106100_2	PF16079	N/A	N/A	N/A	N/A
PHROG	UHGV-0106100_3	phrog_937	65.7	8.4e-19	hemolysin	other
eggNOG-mapper	UHGV-0106100_3	1235792.C808_00576	108.0	1.23e-29	N/A	N/A
eggNOG-mapper	UHGV-0106100_4	515620.EUBELI_20304	217.0	0	N/A	N/A
structural_annotation	UHGV-0106100_4	MF_00637,TIGR01925,COG2172	N/A	N/A	N/A	N/A
UniRef90	UHGV-0106100_5	UniRef90_A0A3R6T240	90.1	1.27e-21	N/A	N/A
structural_annotation	UHGV-0106100_5	PF14213	N/A	N/A	N/A	N/A
KOfam	UHGV-0106100_8	K04763	196.7	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0106100_8	phrog_1	164.7	0	integrase	integration and excision
UniRef90	UHGV-0106100_8	UniRef90_A0A396PRV2	636.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0106100_8	411459.RUMOBE_00920	528.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0106100_8	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0106100_8	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0106100_8	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0106100_8	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0106100_10	phrog_18444	91.1	6.4e-27	N/A	unknown function
UniRef90	UHGV-0106100_10	UniRef90_UPI00156E9A45	99.8	3.15e-26	peptide chain release factor 2	N/A
eggNOG-mapper	UHGV-0106100_10	1294142.CINTURNW_1043	55.5	0.00000000177	N/A	N/A
PHROG	UHGV-0106100_11	phrog_6616	467.2	0	tail protein	tail
UniRef90	UHGV-0106100_11	UniRef90_UPI0015714EA8	671.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0106100_11	33035.JPJF01000043_gene1002	236.0	0	N/A	N/A
structural_annotation	UHGV-0106100_11	PF05954,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0106100_12	phrog_1194	54.7	0.0000000000000018	N/A	unknown function
structural_annotation	UHGV-0106100_12	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0106100_13	phrog_1535	339.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0106100_13	UniRef90_UPI0003F4F1A1	250.0	0	membrane protein	N/A
eggNOG-mapper	UHGV-0106100_13	1391647.AVSV01000003_gene1817	250.0	0	phage tail tape measure protein	N/A
COG	UHGV-0106100_13	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0106100_13	PF11177,PF09486,TIGR02559,COG3237,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-0106100_14	phrog_706	128.9	2.6e-38	N/A	unknown function
UniRef90	UHGV-0106100_14	UniRef90_UPI00156F9D1C	277.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0106100_14	411459.RUMOBE_01383	211.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0106100_14	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0106100_14	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0106100_15	phrog_11299	116.5	1.8e-34	N/A	unknown function
eggNOG-mapper	UHGV-0106100_15	33035.JPJF01000106_gene3125	102.0	6.39e-26	N/A	N/A
structural_annotation	UHGV-0106100_15	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0106100_16	phrog_3099	121.5	6.4e-36	N/A	unknown function
eggNOG-mapper	UHGV-0106100_16	476272.RUMHYD_01782	255.0	0	N/A	N/A
structural_annotation	UHGV-0106100_16	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0106100_17	phrog_3266	81.5	8.2e-24	tail completion	connector
eggNOG-mapper	UHGV-0106100_17	476272.RUMHYD_01781	239.0	0	N/A	N/A
structural_annotation	UHGV-0106100_17	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0106100_18	phrog_556	72.2	5.6e-21	minor head protein	head and packaging
UniRef90	UHGV-0106100_18	UniRef90_UPI000E4989EB	149.0	2.32616e-43	minor capsid protein	N/A
eggNOG-mapper	UHGV-0106100_18	476272.RUMHYD_01780	206.0	0	N/A	N/A
Pfam	UHGV-0106100_18	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0106100_18	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0106100_19	phrog_3366	91.7	7.9e-27	N/A	unknown function
eggNOG-mapper	UHGV-0106100_19	476272.RUMHYD_01779	183.0	0	N/A	N/A
structural_annotation	UHGV-0106100_19	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0106100_20	phrog_541	105.7	2.7e-31	head-tail adaptor	connector
eggNOG-mapper	UHGV-0106100_20	476272.RUMHYD_01778	213.0	0	N/A	N/A
UniRef90	UHGV-0106100_22	UniRef90_A0A0M2NI16	287.0	0	S-l_SbsC_C domain-containing protein	N/A
structural_annotation	UHGV-0106100_22	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0106100_23	phrog_194	59.1	1.5e-17	head scaffolding protein	head and packaging
UniRef90	UHGV-0106100_23	UniRef90_A0A1C5VV13	58.9	0.000000299	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0106100_23	397290.C810_05223	80.5	4.78e-16	Phage minor structural protein GP20	N/A
Pfam	UHGV-0106100_23	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0106100_23	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0106100_25	phrog_581	254.0	0	minor head protein	head and packaging
UniRef90	UHGV-0106100_25	UniRef90_A0A373MXM0	718.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0106100_25	476272.RUMHYD_01761	475.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0106100_25	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0106100_25	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0106100_25	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0106100_26	phrog_3886	307.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0106100_26	742740.HMPREF9474_02292	328.0	0	N/A	N/A
KOfam	UHGV-0106100_27	K03744	154.4	1.4013e-45	lemA; LemA protein	N/A
PHROG	UHGV-0106100_27	phrog_1383	162.9	0	virion structural protein	head and packaging
UniRef90	UHGV-0106100_27	UniRef90_A0A893W810	334.0	0	LemA family protein	N/A
eggNOG-mapper	UHGV-0106100_27	742735.HMPREF9467_00879	279.0	0	LemA family	N/A
Pfam	UHGV-0106100_27	PF04011	N/A	N/A	LemA family	LemA
COG	UHGV-0106100_27	COG1704	N/A	N/A	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	N/A
structural_annotation	UHGV-0106100_27	PF04011,NF040966,COG1704	N/A	N/A	N/A	N/A
PHROG	UHGV-0106100_28	phrog_918	91.6	5e-27	N/A	unknown function
UniRef90	UHGV-0106100_28	UniRef90_UPI001D092FF5	172.0	0	N/A	N/A
eggNOG-mapper	UHGV-0106100_28	1256908.HMPREF0373_00480	186.0	0	N/A	N/A
Pfam	UHGV-0106100_28	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0106100_28	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0106100_29	phrog_1048	98.2	1.3e-28	N/A	unknown function
UniRef90	UHGV-0106100_29	UniRef90_A0A415D571	324.0	0	N/A	N/A
eggNOG-mapper	UHGV-0106100_29	457412.RSAG_01107	136.0	1.56e-38	N/A	N/A
Pfam	UHGV-0106100_29	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0106100_29	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0106100_29	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0106100_30	phrog_533	258.8	0	portal protein	head and packaging
UniRef90	UHGV-0106100_30	UniRef90_A0A3D2KHB8	325.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0106100_30	476272.RUMHYD_01758	338.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0106100_30	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0106100_31	K06909	332.7	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0106100_31	phrog_3717	156.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0106100_31	UniRef90_A0A416ZL34	720.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0106100_31	33035.JPJF01000106_gene3136	416.0	0	Terminase small subunit	N/A
Pfam	UHGV-0106100_31	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0106100_31	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0106100_31	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0106100_31	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0106100_32	K07474	117.2	3e-34	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0106100_32	phrog_51	130.1	1.4e-38	terminase small subunit	head and packaging
UniRef90	UHGV-0106100_32	UniRef90_A0A1I0K7H5	147.0	6.1517e-43	Phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0106100_32	476272.RUMHYD_01754	140.0	3.50002e-41	Terminase small subunit	N/A
Pfam	UHGV-0106100_32	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0106100_32	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0106100_32	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0106100_34	phrog_9479	121.5	6.2e-36	N/A	unknown function
UniRef90	UHGV-0106100_34	UniRef90_A0A2N0UXN8	124.0	3.26e-34	Ntox24 domain-containing protein	N/A
Pfam	UHGV-0106100_34	PF15529	N/A	N/A	Bacterial toxin 24	Ntox24
structural_annotation	UHGV-0106100_34	PF15529	N/A	N/A	N/A	N/A
PHROG	UHGV-0106100_36	phrog_8680	245.8	0	N/A	unknown function
UniRef90	UHGV-0106100_36	UniRef90_A0A373MX42	429.0	0	N/A	N/A
eggNOG-mapper	UHGV-0106100_36	411470.RUMGNA_02208	288.0	0	N/A	N/A
Pfam	UHGV-0106100_36	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0106100_36	PF14386	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0106100_37	476272.RUMHYD_01751	122.0	6.63e-35	N/A	N/A
PHROG	UHGV-0106100_41	phrog_8684	94.9	3.1e-28	N/A	unknown function
UniRef90	UHGV-0106100_41	UniRef90_A0A396Q2T7	228.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0106100_41	411470.RUMGNA_02199	85.1	4.18e-19	N/A	N/A
Pfam	UHGV-0106100_41	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0106100_41	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0106100_41	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0106100_42	phrog_22292	100.6	1.4e-29	N/A	unknown function
eggNOG-mapper	UHGV-0106100_44	1095750.HMPREF9970_0178	134.0	5.15e-40	N/A	N/A
PHROG	UHGV-0106100_47	phrog_17690	83.5	8.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-0106100_47	665950.HMPREF1025_02546	62.0	0.000000000523	N/A	N/A
eggNOG-mapper	UHGV-0106100_48	568816.Acin_1246	53.5	0.000000367	N/A	N/A
PHROG	UHGV-0106100_49	phrog_5051	131.8	4.4e-39	N/A	unknown function
PHROG	UHGV-0106100_51	phrog_20441	103.9	1.3e-30	N/A	unknown function
UniRef90	UHGV-0106100_51	UniRef90_UPI001BE97F1E	94.7	7.24e-23	N/A	N/A
KOfam	UHGV-0106100_53	K00390	78.8	3.4e-23	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0106100_53	phrog_424	112.2	4.8e-33	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0106100_53	UniRef90_UPI000CF96674	533.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0106100_53	1232452.BAIB02000007_gene1640	321.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0106100_53	BrxP_00001	53.6	1.5e-17	BrxP	BREX
Pfam	UHGV-0106100_53	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0106100_53	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0106100_53	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0106100_56	K00558	159.0	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0106100_56	phrog_116	194.3	0	DNA methyltransferase	other
UniRef90	UHGV-0106100_56	UniRef90_A0A373MWF0	785.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0106100_56	742740.HMPREF9474_04317	669.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0106100_56	MTase_II_00164	74.0	7.2e-26	Type II methyltransferase	RM
Pfam	UHGV-0106100_56	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0106100_56	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0106100_56	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0106100_57	phrog_59	144.3	4.2039e-43	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0106100_57	UniRef90_A0A2H4J8J0	222.0	0	Putative HNH endonuclease	N/A
eggNOG-mapper	UHGV-0106100_57	213777.R9R2C9_9CAUD	113.0	2.91e-29	HNH endonuclease	N/A
PADLOC	UHGV-0106100_57	HEase_00016	108.9	8.1e-32	homing endonuclease	RM
Pfam	UHGV-0106100_57	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-0106100_57	PF13392	N/A	N/A	HNH endonuclease	HNH_3
Pfam	UHGV-0106100_57	PF07453	N/A	N/A	NUMOD1 domain	NUMOD1
structural_annotation	UHGV-0106100_57	PF07463,PF07453,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-0106100_59	phrog_15077	82.6	7.5e-24	N/A	unknown function
eggNOG-mapper	UHGV-0106100_59	742740.HMPREF9474_03494	89.7	1.96e-18	N/A	N/A
structural_annotation	UHGV-0106100_60	PF16467	N/A	N/A	N/A	N/A