UHGV-0107795 (vOTU-041879)

Viral Genome: UHGV-0107795

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0107795
vOTU ID	vOTU-041879
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_242059
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.54 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.982
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	7.65
Jumbo phage	No

Genome content
Genome length (bp)	24,920
GC content	39.50%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	48
CDS density	91%
Average CDS length (bps)	474.69
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 55.54)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0107795_1	UniRef90_UPI0018835F0C	79.3	0.00000000000176	collagen-like protein	N/A
PHROG	UHGV-0107795_2	phrog_533	283.2	0	portal protein	head and packaging
UniRef90	UHGV-0107795_2	UniRef90_A0A1C6CDM8	707.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0107795_2	33035.JPJF01000106_gene3135	542.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0107795_2	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0107795_4	K06909	335.7	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0107795_4	phrog_3717	164.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0107795_4	UniRef90_A0A395X9V4	802.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0107795_4	397291.C804_01612	411.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0107795_4	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0107795_4	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0107795_4	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0107795_4	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0107795_5	phrog_606	91.7	8.3e-27	terminase small subunit	head and packaging
UniRef90	UHGV-0107795_5	UniRef90_UPI001F487344	173.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0107795_5	397290.C810_05185	180.0	0	DNA-packaging protein gp3	N/A
Pfam	UHGV-0107795_5	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0107795_5	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0107795_7	phrog_10714	49.1	0.00000000000012	N/A	unknown function
structural_annotation	UHGV-0107795_9	PF11302	N/A	N/A	N/A	N/A
PHROG	UHGV-0107795_13	phrog_20593	58.0	1.2e-16	N/A	unknown function
eggNOG-mapper	UHGV-0107795_16	476272.RUMHYD_01751	48.1	0.00000901	N/A	N/A
AcrCatalog	UHGV-0107795_16	cluster_11670	43.1	0.0000000307	NA	N/A
PHROG	UHGV-0107795_17	phrog_15198	54.0	0.0000000000000029	N/A	unknown function
UniRef90	UHGV-0107795_17	UniRef90_A0A373NR41	115.0	3.17e-31	N/A	N/A
eggNOG-mapper	UHGV-0107795_17	411470.RUMGNA_00214	55.8	0.0000000831	N/A	N/A
Pfam	UHGV-0107795_17	PF04448	N/A	N/A	N/A	DUF551
eggNOG-mapper	UHGV-0107795_18	457412.RSAG_01159	255.0	0	N/A	N/A
structural_annotation	UHGV-0107795_18	PF06319,NF033832,COG5321	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0107795_20	397290.C810_01505	139.0	1.13001e-41	N/A	N/A
structural_annotation	UHGV-0107795_21	NF041197	N/A	N/A	N/A	N/A
KOfam	UHGV-0107795_22	K00390	100.3	1.3e-29	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0107795_22	phrog_424	127.2	9.7e-38	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0107795_22	UniRef90_A0A412EKX4	532.0	0	Adenylyl-sulfate reductase	N/A
eggNOG-mapper	UHGV-0107795_22	1232452.BAIB02000007_gene1640	411.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0107795_22	BrxP_00001	69.3	2e-21	BrxP	BREX
Pfam	UHGV-0107795_22	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0107795_22	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0107795_22	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
UniRef90	UHGV-0107795_24	UniRef90_A0A412ELN5	173.0	0	LexA_DNA_bind domain-containing protein	N/A
eggNOG-mapper	UHGV-0107795_24	1235799.C818_03301	48.1	0.00000326	LexA DNA binding domain	N/A
Pfam	UHGV-0107795_24	PF01726	N/A	N/A	LexA DNA binding domain	LexA_DNA_bind
COG	UHGV-0107795_24	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0107795_24	PF01726,COG0640	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0107795_25	596152.DesU5LDRAFT_1910	77.0	0.0000000000000105	N/A	N/A
structural_annotation	UHGV-0107795_25	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-0107795_27	phrog_8841	556.3	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0107795_27	UniRef90_A0A412EL97	1233.0	0	N/A	N/A
eggNOG-mapper	UHGV-0107795_27	476272.RUMHYD_01742	771.0	0	N/A	N/A
Pfam	UHGV-0107795_27	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0107795_27	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0107795_27	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0107795_27	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-0107795_28	K02316	68.5	1.1e-19	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0107795_28	phrog_11992	155.6	0	N/A	unknown function
UniRef90	UHGV-0107795_28	UniRef90_A0A395X7I4	331.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0107795_28	476272.RUMHYD_01741	181.0	0	CHC2 zinc finger	N/A
PADLOC	UHGV-0107795_28	drt-cluster192	58.7	1.5e-16	DRT	DRT
Pfam	UHGV-0107795_28	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0107795_28	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0107795_28	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-0107795_29	phrog_3490	148.0	4.76441e-44	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0107795_29	UniRef90_A0A395XB48	347.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0107795_29	357809.Cphy_2986	218.0	0	N/A	N/A
Pfam	UHGV-0107795_29	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0107795_29	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-0107795_30	K03111	134.0	1.9e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0107795_30	phrog_44	139.4	2.4e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0107795_30	UniRef90_A0A412ELG8	276.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0107795_30	658655.HMPREF0988_02584	185.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0107795_30	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0107795_30	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0107795_30	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0107795_30	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0107795_30	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0107795_31	phrog_155	146.1	2.10195e-43	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0107795_31	UniRef90_A0A1V5UPJ3	177.0	0	ERF superfamily protein	N/A
eggNOG-mapper	UHGV-0107795_31	929506.CbC4_1193	169.0	0	ERF superfamily	N/A
Pfam	UHGV-0107795_31	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0107795_31	PF04404,TIGR00607,COG1978	N/A	N/A	N/A	N/A
UniRef90	UHGV-0107795_32	UniRef90_R6RDX0	79.0	5.26e-18	Arginyl-tRNA synthetase	N/A
structural_annotation	UHGV-0107795_33	NF001645	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0107795_35	PF10922,TIGR03741	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0107795_37	cluster_17974	52.8	0.000000000000841	NA	N/A
PHROG	UHGV-0107795_39	phrog_478	119.9	1.3e-35	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0107795_39	UniRef90_A0A373Q857	118.0	3.8e-31	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0107795_39	1111121.HMPREF1247_0834	102.0	2.21e-26	N/A	N/A
KOfam	UHGV-0107795_41	K22300	44.5	0.0000000000031	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0107795_41	UniRef90_A0A412ELD4	137.0	4.85998e-41	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0107795_41	1235801.C822_00106	57.8	0.000000000208	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0107795_41	retron_type_VI_hth_cluster2_1	40.5	0.000000000077	N/A	Retron
Pfam	UHGV-0107795_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0107795_41	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0107795_41	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0107795_42	phrog_2967	58.4	1.5e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0107795_42	UniRef90_A0A416SLU4	248.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0107795_42	476272.RUMHYD_03305	79.0	2.83e-16	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0107795_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0107795_42	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0107795_42	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0107795_45	K11641	130.5	1.2e-38	natR; two-component system, LytTR family, response regulator NatR	N/A
PHROG	UHGV-0107795_45	phrog_8810	119.4	3.3e-35	N/A	unknown function
UniRef90	UHGV-0107795_45	UniRef90_A0A395X907	471.0	0	Stage 0 sporulation protein A homolog	N/A
eggNOG-mapper	UHGV-0107795_45	742740.HMPREF9474_03223	140.0	2.6e-38	LytTr DNA-binding domain	N/A
Pfam	UHGV-0107795_45	PF00072	N/A	N/A	Response regulator receiver domain	Response_reg
Pfam	UHGV-0107795_45	PF04397	N/A	N/A	LytTr DNA-binding domain	LytTR
COG	UHGV-0107795_45	COG3279	N/A	N/A	DNA-binding response regulator, LytR/AlgR family	N/A
structural_annotation	UHGV-0107795_45	PF04397,PF00072,MF_00981,NF010684,COG3279	N/A	N/A	N/A	N/A
PHROG	UHGV-0107795_46	phrog_4431	97.8	1.5e-28	N/A	unknown function
UniRef90	UHGV-0107795_46	UniRef90_A0A412ELU3	426.0	0	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-0107795_46	1449343.JQLQ01000002_gene1561	61.2	0.0000000307	N/A	N/A
Pfam	UHGV-0107795_46	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
KOfam	UHGV-0107795_47	K06400	282.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0107795_47	phrog_95	313.2	0	integrase	integration and excision
UniRef90	UHGV-0107795_47	UniRef90_A0A412ELC2	1020.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0107795_47	33035.JPJF01000109_gene439	652.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0107795_47	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0107795_47	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0107795_47	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0107795_47	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0107795_47	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0107795_48	K07273	44.0	0.0000000000029	acm; lysozyme	N/A
PHROG	UHGV-0107795_48	phrog_14030	137.8	0	N/A	unknown function
UniRef90	UHGV-0107795_48	UniRef90_A0A1C5RZF8	583.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0107795_48	742741.HMPREF9475_00446	216.0	0	N/A	N/A