UHGV-0108293 (vOTU-169564)

Viral Genome: UHGV-0108293

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0108293
vOTU ID	vOTU-169564
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_254687
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.08 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9788
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.85
Jumbo phage	No

Genome content
Genome length (bp)	27,695
GC content	47.42%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	94%
Average CDS length (bps)	518.94
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 55.08)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0108293_5	UniRef90_A0A413FY90	105.0	1.58e-25	Molecular chaperone GrpE	N/A
eggNOG-mapper	UHGV-0108293_5	411902.CLOBOL_05703	343.0	0	N/A	N/A
PHROG	UHGV-0108293_6	phrog_3584	179.6	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0108293_6	610130.Closa_0713	334.0	0	N/A	N/A
structural_annotation	UHGV-0108293_6	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0108293_7	K03469	73.1	5.6e-21	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0108293_7	phrog_531	66.2	5.9e-19	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0108293_7	UniRef90_A8S0K6	308.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0108293_7	411902.CLOBOL_05701	308.0	0	RNase H	N/A
Pfam	UHGV-0108293_7	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0108293_7	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0108293_7	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0108293_9	411902.CLOBOL_05699	316.0	0	N/A	N/A
PHROG	UHGV-0108293_10	phrog_4433	84.1	2.1e-29	N/A	unknown function
eggNOG-mapper	UHGV-0108293_10	411902.CLOBOL_05698	404.0	0	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0108293_10	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0108293_10	PF12120,NF000318	N/A	N/A	N/A	N/A
PHROG	UHGV-0108293_11	phrog_8470	87.8	1.1e-25	N/A	unknown function
UniRef90	UHGV-0108293_11	UniRef90_UPI001D07A49A	505.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0108293_11	411902.CLOBOL_05697	1006.0	0	PcfJ-like protein	N/A
PHROG	UHGV-0108293_12	phrog_8470	123.7	1.5e-36	N/A	unknown function
UniRef90	UHGV-0108293_12	UniRef90_UPI001F2DB58E	298.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0108293_12	411902.CLOBOL_05697	362.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0108293_12	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
PHROG	UHGV-0108293_13	phrog_15077	96.0	7.2e-28	N/A	unknown function
UniRef90	UHGV-0108293_13	UniRef90_A0A3A6HZA9	224.0	0	N/A	N/A
eggNOG-mapper	UHGV-0108293_13	411902.CLOBOL_05696	692.0	0	N/A	N/A
structural_annotation	UHGV-0108293_13	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0108293_14	phrog_7566	85.1	5.1e-25	N/A	unknown function
eggNOG-mapper	UHGV-0108293_14	411902.CLOBOL_05695	199.0	0	N/A	N/A
KOfam	UHGV-0108293_17	K03111	129.2	5.2e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0108293_17	phrog_44	128.7	4.5e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0108293_17	UniRef90_A8S0J4	288.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0108293_17	411902.CLOBOL_05692	288.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0108293_17	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0108293_17	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0108293_17	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0108293_17	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0108293_17	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0108293_18	K03111	41.7	0.000000000025	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0108293_18	phrog_26861	126.3	1.6e-37	N/A	unknown function
UniRef90	UHGV-0108293_18	UniRef90_N9YYH7	375.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0108293_18	411902.CLOBOL_05691	432.0	0	N/A	N/A
Pfam	UHGV-0108293_18	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0108293_18	NF004476.0	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0108293_18	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0108293_18	PF00436,PF13567,MF_00984,NF004476,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0108293_20	phrog_2245	86.5	3.2e-25	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0108293_20	UniRef90_A0A1E3UAI9	140.0	1.60995e-41	MazG domain-containing protein	N/A
eggNOG-mapper	UHGV-0108293_20	658655.HMPREF0988_00885	85.1	3.08e-20	N/A	N/A
structural_annotation	UHGV-0108293_20	PF10400,MF_01019,NF010671,COG0140	N/A	N/A	N/A	N/A
PHROG	UHGV-0108293_21	phrog_4572	58.7	9.6e-17	N/A	unknown function
eggNOG-mapper	UHGV-0108293_21	411902.CLOBOL_05688	232.0	0	N/A	N/A
PHROG	UHGV-0108293_22	phrog_1672	69.6	4.7e-20	N/A	unknown function
eggNOG-mapper	UHGV-0108293_22	665959.HMPREF1013_00860	68.9	0.00000000000048	N/A	N/A
UniRef90	UHGV-0108293_23	UniRef90_UPI001F178C7B	202.0	0	N/A	N/A
eggNOG-mapper	UHGV-0108293_23	665950.HMPREF1025_02544	50.8	0.0000043	N/A	N/A
eggNOG-mapper	UHGV-0108293_24	1304866.K413DRAFT_1210	94.7	1.54e-24	N/A	N/A
structural_annotation	UHGV-0108293_24	NF041909	N/A	N/A	N/A	N/A
KOfam	UHGV-0108293_26	K00571	145.3	6.40393e-43	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0108293_26	phrog_67	154.6	0	DNA methyltransferase	other
UniRef90	UHGV-0108293_26	UniRef90_A8RGI6	499.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0108293_26	411902.CLOBOL_00154	499.0	0	DNA methylase	N/A
PADLOC	UHGV-0108293_26	MTase_II_00037	256.8	0	Type II methyltransferase	RM
Pfam	UHGV-0108293_26	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0108293_26	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0108293_26	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0108293_28	411902.CLOBOL_05678	149.0	0	N/A	N/A
PHROG	UHGV-0108293_29	phrog_918	97.8	6.2e-29	N/A	unknown function
UniRef90	UHGV-0108293_29	UniRef90_UPI00156D5D02	159.0	0	N/A	N/A
eggNOG-mapper	UHGV-0108293_29	411902.CLOBOL_05677	195.0	0	N/A	N/A
Pfam	UHGV-0108293_29	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0108293_29	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0108293_33	phrog_15198	40.0	0.000000000025	N/A	unknown function
UniRef90	UHGV-0108293_33	UniRef90_A0A0F0C7A4	144.0	1.51999e-41	N/A	N/A
eggNOG-mapper	UHGV-0108293_33	1232453.BAIF02000057_gene1153	75.5	0.00000000000000492	N/A	N/A
Pfam	UHGV-0108293_33	PF04448	N/A	N/A	N/A	DUF551
KOfam	UHGV-0108293_34	K07728	40.9	0.000000000025	K07728; putative transcriptional regulator	N/A
UniRef90	UHGV-0108293_34	UniRef90_A0A0E2H8K6	111.0	5.43e-31	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0108293_34	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0108293_34	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0108293_34	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0108293_35	K01356	43.5	0.0000000000069	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0108293_35	phrog_24920	48.5	0.00000000000016	N/A	unknown function
UniRef90	UHGV-0108293_35	UniRef90_A8S0H4	132.0	8.06e-39	LexA_DNA_bind domain-containing protein	N/A
eggNOG-mapper	UHGV-0108293_35	411902.CLOBOL_05676	132.0	1.35e-39	LexA DNA binding domain	N/A
Pfam	UHGV-0108293_35	PF01726	N/A	N/A	LexA DNA binding domain	LexA_DNA_bind
COG	UHGV-0108293_35	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0108293_35	PF01726,MF_00732,TIGR00738,COG1959	N/A	N/A	N/A	N/A
KOfam	UHGV-0108293_36	K04763	222.1	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0108293_36	phrog_1	166.2	0	integrase	integration and excision
UniRef90	UHGV-0108293_36	UniRef90_UPI001F2B52E5	591.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0108293_36	411902.CLOBOL_05674	643.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0108293_36	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0108293_36	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0108293_36	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0108293_36	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0108293_37	phrog_25231	55.1	0.000000000000001	N/A	unknown function
eggNOG-mapper	UHGV-0108293_37	411902.CLOBOL_05673	145.0	8.40779e-45	N/A	N/A
structural_annotation	UHGV-0108293_37	PF04936	N/A	N/A	N/A	N/A
PHROG	UHGV-0108293_38	phrog_11237	101.8	6.1e-30	N/A	unknown function
eggNOG-mapper	UHGV-0108293_38	1235798.C817_02584	155.0	0	N/A	N/A
KOfam	UHGV-0108293_39	K06223	221.9	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0108293_39	phrog_56	189.7	0	DNA methyltransferase	other
UniRef90	UHGV-0108293_39	UniRef90_UPI001F280115	504.0	0	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-0108293_39	411902.CLOBOL_05671	413.0	0	COG COG0338 Site-specific DNA methylase	N/A
PADLOC	UHGV-0108293_39	MTase_II_00039	173.1	0	Type II methyltransferase	RM
Pfam	UHGV-0108293_39	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-0108293_39	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-0108293_39	PF02086,MF_01872,TIGR00571,COG0338	N/A	N/A	N/A	N/A
KOfam	UHGV-0108293_40	K22014	45.5	0.0000000000013	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	N/A
PHROG	UHGV-0108293_40	phrog_57	115.7	4.6e-34	terminase small subunit	head and packaging
UniRef90	UHGV-0108293_40	UniRef90_UPI001D090976	349.0	0	protoporphyrinogen oxidase	N/A
eggNOG-mapper	UHGV-0108293_40	1203606.HMPREF1526_01898	187.0	0	N/A	N/A
COG	UHGV-0108293_40	COG4220	N/A	N/A	Phage DNA packaging protein, Nu1 subunit of terminase	N/A
structural_annotation	UHGV-0108293_40	PF07471,NF040990,COG4220	N/A	N/A	N/A	N/A
KOfam	UHGV-0108293_41	K21512	418.5	0	gpA; terminase, large subunit [EC:3.1.21.4]	N/A
PHROG	UHGV-0108293_41	phrog_15	593.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0108293_41	UniRef90_UPI001D0878A2	1309.0	0	phage terminase large subunit family protein	N/A
eggNOG-mapper	UHGV-0108293_41	1519439.JPJG01000059_gene1919	1090.0	0	Phage terminase large subunit (GpA)	N/A
Pfam	UHGV-0108293_41	PF05876	N/A	N/A	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
Pfam	UHGV-0108293_41	PF20454	N/A	N/A	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
COG	UHGV-0108293_41	COG5525	N/A	N/A	Phage terminase, large subunit GpA	N/A
HAMAP	UHGV-0108293_41	MF_04144	N/A	N/A	Terminase, large subunit	N/A
structural_annotation	UHGV-0108293_41	PF05876,PF20454,MF_04144,TIGR01547,COG5525	N/A	N/A	N/A	N/A
PHROG	UHGV-0108293_42	phrog_118	65.0	8.5e-19	head-tail adaptor	connector
UniRef90	UHGV-0108293_42	UniRef90_A0A101WGN2	103.0	2.55e-27	Chemotaxis protein	N/A
eggNOG-mapper	UHGV-0108293_42	1519439.JPJG01000059_gene1920	123.0	1.06e-35	N/A	N/A
structural_annotation	UHGV-0108293_42	PF19645	N/A	N/A	N/A	N/A
PHROG	UHGV-0108293_43	phrog_21	339.3	0	portal protein	head and packaging
UniRef90	UHGV-0108293_43	UniRef90_UPI001D074A68	1080.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0108293_43	411483.FAEPRAA2165_01899	849.0	0	Phage portal protein, lambda family	N/A
Pfam	UHGV-0108293_43	PF05136	N/A	N/A	Phage portal protein, lambda family	Phage_portal_2
NCBIFam	UHGV-0108293_43	TIGR01539.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0108293_43	COG5511	N/A	N/A	Phage capsid protein	N/A
structural_annotation	UHGV-0108293_43	PF05136,MF_04135,TIGR01539,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0108293_44	K01358	114.3	1.5e-33	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0108293_44	phrog_94	194.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0108293_44	UniRef90_UPI001D06D512	803.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0108293_44	411483.FAEPRAA2165_01900	535.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0108293_44	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0108293_44	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0108293_44	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0108293_45	phrog_49	48.9	0.00000000000011	head decoration	head and packaging
UniRef90	UHGV-0108293_45	UniRef90_UPI001D084E30	256.0	0	head decoration protein	N/A
eggNOG-mapper	UHGV-0108293_45	537007.BLAHAN_04235	159.0	0	N/A	N/A
structural_annotation	UHGV-0108293_45	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-0108293_46	phrog_29	181.9	0	major head protein	head and packaging
UniRef90	UHGV-0108293_46	UniRef90_UPI001D08B439	707.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0108293_46	411483.FAEPRAA2165_01902	556.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0108293_46	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0108293_46	PF03864,MF_04133,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0108293_47	phrog_3281	83.9	1.4e-24	endonuclease VII	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0108293_47	UniRef90_A0A371J789	66.2	0.0000000000358	SAP domain-containing protein	N/A
eggNOG-mapper	UHGV-0108293_47	1519439.JPJG01000059_gene1925	52.0	0.0000016	N/A	N/A
structural_annotation	UHGV-0108293_47	PF07498	N/A	N/A	N/A	N/A
PHROG	UHGV-0108293_48	phrog_2551	112.1	3e-33	minor tail protein	tail
UniRef90	UHGV-0108293_48	UniRef90_A0A318EKR9	100.0	2.7e-25	ATP-binding sugar transporter Gifsy-2	N/A
eggNOG-mapper	UHGV-0108293_48	411470.RUMGNA_00232	101.0	1.5e-26	ATP-binding sugar transporter from pro-phage	N/A
structural_annotation	UHGV-0108293_48	PF13856	N/A	N/A	N/A	N/A
PHROG	UHGV-0108293_49	phrog_27	48.5	0.00000000000016	tail completion or Neck1 protein	connector
UniRef90	UHGV-0108293_49	UniRef90_UPI001D085A53	357.0	0	phage tail protein	N/A
Pfam	UHGV-0108293_49	PF06763	N/A	N/A	Prophage minor tail protein Z (GPZ)	Minor_tail_Z
structural_annotation	UHGV-0108293_49	PF06763	N/A	N/A	N/A	N/A