UHGV-0108380 (vOTU-041954)

Viral Genome: UHGV-0108380

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0108380
vOTU ID	vOTU-041954
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_249587
Associated BioSample	SAMEA3708762
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.73 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9825
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	-4.25
Jumbo phage	No

Genome content
Genome length (bp)	26,372
GC content	43.28%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	35
CDS density	94%
Average CDS length (bps)	708.69
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 67.73)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0108380_1	K03086	268.8	0	rpoD; RNA polymerase primary sigma factor	N/A
PHROG	UHGV-0108380_1	phrog_351	172.1	0	RNA polymerase sigma factor	transcription regulation
UniRef90	UHGV-0108380_1	UniRef90_UPI0015FA2A89	236.0	0	RNA polymerase sigma factor RpoD	N/A
eggNOG-mapper	UHGV-0108380_1	411469.EUBHAL_01215	295.0	0	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth	N/A
PADLOC	UHGV-0108380_1	MzaA_00001	85.9	6.8e-25	NA	mzaABCDE
Pfam	UHGV-0108380_1	PF04539	N/A	N/A	Sigma-70 region 3	Sigma70_r3
Pfam	UHGV-0108380_1	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
NCBIFam	UHGV-0108380_1	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-0108380_1	COG0568	N/A	N/A	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	N/A
eggNOG-mapper	UHGV-0108380_2	1226322.HMPREF1545_00079	51.2	0.000000834	N/A	N/A
eggNOG-mapper	UHGV-0108380_3	476272.RUMHYD_01772	54.3	0.000000357	N/A	N/A
structural_annotation	UHGV-0108380_3	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0108380_4	phrog_20016	205.4	0	N/A	unknown function
UniRef90	UHGV-0108380_4	UniRef90_A0A285PT46	268.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0108380_4	1226322.HMPREF1545_00077	189.0	0	N/A	N/A
structural_annotation	UHGV-0108380_4	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0108380_5	phrog_16490	150.1	1.26117e-44	N/A	unknown function
eggNOG-mapper	UHGV-0108380_5	476272.RUMHYD_01770	97.4	1.64e-21	N/A	N/A
PHROG	UHGV-0108380_6	phrog_21718	70.9	1.8e-20	N/A	unknown function
UniRef90	UHGV-0108380_6	UniRef90_A0A285PT36	253.0	0	Consensus disorder prediction	N/A
eggNOG-mapper	UHGV-0108380_6	476272.RUMHYD_01768	60.8	0.00000000189	N/A	N/A
PHROG	UHGV-0108380_7	phrog_3754	95.1	6.7e-28	N/A	unknown function
eggNOG-mapper	UHGV-0108380_7	476272.RUMHYD_01764	148.0	1.26117e-44	N/A	N/A
UniRef90	UHGV-0108380_8	UniRef90_A0A285PXT6	167.0	0	Winged helix-turn-helix DNA-binding domain	N/A
PHROG	UHGV-0108380_9	phrog_199	48.0	0.00000000000015	holin	lysis
UniRef90	UHGV-0108380_9	UniRef90_A0A285PUE3	217.0	0	Bacteriophage holin family	N/A
eggNOG-mapper	UHGV-0108380_9	394503.Ccel_2943	55.8	0.0000000393	toxin secretion phage lysis holin	N/A
Pfam	UHGV-0108380_9	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
COG	UHGV-0108380_9	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0108380_9	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
COG	UHGV-0108380_10	COG3204	N/A	N/A	N/A	N/A
PHROG	UHGV-0108380_11	phrog_3558	385.3	0	tail protein	tail
UniRef90	UHGV-0108380_11	UniRef90_A8SKQ2	260.0	0	Phage minor structural protein, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0108380_11	411465.PEPMIC_00746	260.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0108380_11	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0108380_11	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0108380_11	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0108380_11	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0108380_12	phrog_33	58.6	1.7e-16	distal tail protein Dit	tail
UniRef90	UHGV-0108380_12	UniRef90_A0A351TQW0	209.0	0	MtfA protein	N/A
eggNOG-mapper	UHGV-0108380_12	411490.ANACAC_00709	179.0	0	phage tail	N/A
COG	UHGV-0108380_12	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0108380_12	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0108380_13	phrog_1686	75.0	6.8e-22	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0108380_13	1232446.BAIE02000011_gene1586	68.9	0.0000000000119	phage tail tape measure protein	N/A
COG	UHGV-0108380_13	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0108380_14	phrog_688	343.2	0	transposase	integration and excision
UniRef90	UHGV-0108380_14	UniRef90_A0A374NMH3	1075.0	0	IS66 family transposase	N/A
eggNOG-mapper	UHGV-0108380_14	1469948.JPNB01000001_gene1410	661.0	0	Transposase IS66 family	N/A
Pfam	UHGV-0108380_14	PF13007	N/A	N/A	Transposase C of IS166 homeodomain	LZ_Tnp_IS66
Pfam	UHGV-0108380_14	PF03050	N/A	N/A	Transposase IS66 family	DDE_Tnp_IS66
Pfam	UHGV-0108380_14	PF13817	N/A	N/A	IS66 C-terminal element	DDE_Tnp_IS66_C
NCBIFam	UHGV-0108380_14	NF033517.1	N/A	N/A	IS66 family transposase	N/A
COG	UHGV-0108380_14	COG3316	N/A	N/A	Transposase (or an inactivated derivative), DDE domain	N/A
structural_annotation	UHGV-0108380_14	PF03050,NF033517,COG3464	N/A	N/A	N/A	N/A
KOfam	UHGV-0108380_15	K07484	52.1	0.000000000000015	K07484; transposase	N/A
PHROG	UHGV-0108380_15	phrog_623	97.9	8e-29	transposase	integration and excision
UniRef90	UHGV-0108380_15	UniRef90_A0A6N7YGG1	235.0	0	IS66 family insertion sequence element accessory protein TnpB	N/A
eggNOG-mapper	UHGV-0108380_15	397287.C807_03578	153.0	0	IS66 Orf2 like protein	N/A
Pfam	UHGV-0108380_15	PF05717	N/A	N/A	IS66 Orf2 like protein	TnpB_IS66
NCBIFam	UHGV-0108380_15	NF033819.0	N/A	N/A	IS66 family insertion sequence element accessory protein TnpB	N/A
COG	UHGV-0108380_15	COG3436	N/A	N/A	Transposase	N/A
structural_annotation	UHGV-0108380_15	PF05717,NF033819	N/A	N/A	N/A	N/A
UniRef90	UHGV-0108380_16	UniRef90_A0A6N7YJ84	205.0	0	IS66 family insertion sequence element accessory protein TnpB	N/A
eggNOG-mapper	UHGV-0108380_16	411468.CLOSCI_00172	143.0	3.86058e-42	N/A	N/A
PHROG	UHGV-0108380_17	phrog_1533	250.0	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0108380_17	641112.ACOK01000073_gene2904	281.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0108380_17	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0108380_17	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0108380_17	COG5283	N/A	N/A	Phage-related tail protein	N/A
UniRef90	UHGV-0108380_19	UniRef90_A0A285PXU7	230.0	0	Consensus disorder prediction	N/A
PHROG	UHGV-0108380_20	phrog_885	74.9	9.6e-22	major tail protein	tail
UniRef90	UHGV-0108380_20	UniRef90_A0A843J9F0	208.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0108380_20	1504822.CCNO01000012_gene492	221.0	0	N/A	N/A
structural_annotation	UHGV-0108380_20	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0108380_21	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0108380_22	phrog_17977	76.9	2.1e-22	N/A	unknown function
UniRef90	UHGV-0108380_22	UniRef90_A0A285PT57	221.0	0	Phage head-tail joining protein	N/A
Pfam	UHGV-0108380_22	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0108380_22	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0108380_22	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0108380_24	phrog_544	190.2	0	major head protein	head and packaging
UniRef90	UHGV-0108380_24	UniRef90_A0A810PZM2	382.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0108380_24	1347392.CCEZ01000005_gene1236	256.0	0	N/A	N/A
structural_annotation	UHGV-0108380_24	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0108380_25	PF06810	N/A	N/A	N/A	N/A
KOfam	UHGV-0108380_26	K07273	148.9	4.34403e-44	acm; lysozyme	N/A
PHROG	UHGV-0108380_26	phrog_291	133.9	1.5e-39	endolysin	lysis
UniRef90	UHGV-0108380_26	UniRef90_A0A285PUE0	566.0	0	Lysozyme	N/A
eggNOG-mapper	UHGV-0108380_26	1235800.C819_00458	171.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0108380_26	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0108380_26	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0108380_26	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0108380_26	PF01183,PF01471,MF_02227,NF007360,COG3757,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0108380_27	phrog_1048	162.5	0	N/A	unknown function
UniRef90	UHGV-0108380_27	UniRef90_UPI0018AA3785	268.0	0	N/A	N/A
eggNOG-mapper	UHGV-0108380_27	457412.RSAG_01107	263.0	0	N/A	N/A
Pfam	UHGV-0108380_27	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0108380_27	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0108380_27	PF11195	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0108380_28	411469.EUBHAL_00974	95.5	1.47e-20	CHAP domain	N/A
COG	UHGV-0108380_28	COG0741	N/A	N/A	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	N/A
structural_annotation	UHGV-0108380_28	PF05382	N/A	N/A	N/A	N/A
PHROG	UHGV-0108380_29	phrog_5	77.0	3.5e-22	tail completion or Neck1 protein	connector
UniRef90	UHGV-0108380_29	UniRef90_A0A285PXV7	266.0	0	Bacteriophage HK97-gp10, putative tail-component	N/A
eggNOG-mapper	UHGV-0108380_29	1504822.CCNO01000013_gene284	92.0	2.45e-22	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0108380_29	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0108380_29	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0108380_29	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0108380_30	phrog_2468	91.5	2.2e-27	head morphogenesis	head and packaging
UniRef90	UHGV-0108380_30	UniRef90_A0A285PUG1	631.0	0	Phage head morphogenesis domain	N/A
eggNOG-mapper	UHGV-0108380_30	1504822.CCNO01000013_gene286	164.0	3.16693e-43	cell adhesion	N/A
Pfam	UHGV-0108380_30	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0108380_30	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0108380_30	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0108380_31	phrog_64	151.7	1.4013e-45	portal protein	head and packaging
UniRef90	UHGV-0108380_31	UniRef90_A0A285PU84	885.0	0	Phage portal protein, SPP1 Gp6-like	N/A
eggNOG-mapper	UHGV-0108380_31	673376.F2VHW1_9CAUD	202.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0108380_31	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0108380_31	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0108380_32	K06909	114.9	9.2e-34	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0108380_32	phrog_10250	142.9	1.90016e-42	N/A	unknown function
UniRef90	UHGV-0108380_32	UniRef90_A0A285PT65	799.0	0	Phage_term_2: phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0108380_32	476272.RUMHYD_01756	330.0	0	N/A	N/A
Pfam	UHGV-0108380_32	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0108380_32	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0108380_32	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0108380_32	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0108380_32	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0108380_33	phrog_309	123.0	1.7e-36	terminase small subunit	head and packaging
UniRef90	UHGV-0108380_33	UniRef90_A0A285PT83	205.0	0	Homeobox domain-like	N/A
eggNOG-mapper	UHGV-0108380_33	1035196.HMPREF9998_01273	102.0	1.98e-26	HNH endonuclease	N/A
COG	UHGV-0108380_33	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0108380_33	PF07141	N/A	N/A	N/A	N/A
UniRef90	UHGV-0108380_34	UniRef90_A0A285PYI3	209.0	0	Homeodomain-like domain	N/A
Pfam	UHGV-0108380_34	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-0108380_34	PF06530,MF_00674,TIGR01636,COG1342	N/A	N/A	N/A	N/A
UniRef90	UHGV-0108380_35	UniRef90_R6D4X3	50.1	0.00000198	N/A	N/A
eggNOG-mapper	UHGV-0108380_35	1410609.JHVB01000006_gene729	47.0	0.00000564	N/A	N/A
Pfam	UHGV-0108380_35	PF07866	N/A	N/A	N/A	DUF1653
COG	UHGV-0108380_35	COG4728	N/A	N/A	N/A	N/A