UHGV-0109537 (vOTU-062739)

Viral Genome: UHGV-0109537

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0109537
vOTU ID	vOTU-062739
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_240028
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.54 (High-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9774
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.8
Jumbo phage	No

Genome content
Genome length (bp)	36,089
GC content	44.52%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	52
CDS density	92%
Average CDS length (bps)	638.31
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 95.54)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0109537_1	K01447	100.5	2.5e-29	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0109537_1	phrog_3088	164.9	0	amidase	lysis
UniRef90	UHGV-0109537_1	UniRef90_A0A416ZS17	741.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0109537_1	478749.BRYFOR_07564	244.0	0	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-0109537_1	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0109537_1	COG3087	N/A	N/A	Cell division protein FtsN	N/A
structural_annotation	UHGV-0109537_1	PF01510,PF18342,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A
PHROG	UHGV-0109537_2	phrog_199	70.3	2.5e-20	holin	lysis
UniRef90	UHGV-0109537_2	UniRef90_A0A416ZS05	284.0	0	Holin	N/A
eggNOG-mapper	UHGV-0109537_2	411460.RUMTOR_02100	223.0	0	N/A	N/A
Pfam	UHGV-0109537_2	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0109537_2	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
structural_annotation	UHGV-0109537_2	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0109537_4	phrog_585	76.5	4e-22	N/A	unknown function
UniRef90	UHGV-0109537_4	UniRef90_A0A416ZS00	257.0	0	N/A	N/A
eggNOG-mapper	UHGV-0109537_4	871963.Desdi_0124	88.6	7.68e-21	N/A	N/A
Pfam	UHGV-0109537_4	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-0109537_4	PF10711,TIGR03433,COG3355	N/A	N/A	N/A	N/A
UniRef90	UHGV-0109537_7	UniRef90_UPI0013141798	108.0	2.98e-30	ribbon-helix-helix protein, CopG family	N/A
Pfam	UHGV-0109537_7	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-0109537_7	PF01402,NF041793,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-0109537_11	phrog_28673	177.8	0	tail protein	tail
eggNOG-mapper	UHGV-0109537_11	1540090.A0A0A0RS40_9CAUD	164.0	7.74e-40	N/A	N/A
structural_annotation	UHGV-0109537_11	PF10651,PF14606	N/A	N/A	N/A	N/A
PHROG	UHGV-0109537_12	phrog_19695	70.1	5.6e-20	N/A	unknown function
eggNOG-mapper	UHGV-0109537_12	411462.DORLON_00772	87.0	6.22e-21	N/A	N/A
structural_annotation	UHGV-0109537_12	PF19714	N/A	N/A	N/A	N/A
PHROG	UHGV-0109537_13	phrog_24267	59.2	1.6e-17	N/A	unknown function
UniRef90	UHGV-0109537_13	UniRef90_R5HGH3	59.3	0.00000055	Phage minor structural protein	N/A
eggNOG-mapper	UHGV-0109537_13	526218.Sterm_2930	80.1	0.0000000000000235	N/A	N/A
KOfam	UHGV-0109537_14	K21471	43.8	0.0000000000055	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	N/A
PHROG	UHGV-0109537_14	phrog_14030	158.2	0	N/A	unknown function
UniRef90	UHGV-0109537_14	UniRef90_UPI0013140944	662.0	0	phage tail tip lysozyme	N/A
eggNOG-mapper	UHGV-0109537_14	33035.JPJF01000093_gene2240	280.0	0	NlpC/P60 family	N/A
Pfam	UHGV-0109537_14	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0109537_14	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
COG	UHGV-0109537_14	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0109537_14	PF18013,PF05382,NF033742,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0109537_15	phrog_1067	292.2	0	minor head protein	head and packaging
UniRef90	UHGV-0109537_15	UniRef90_A0A373N0D4	1153.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0109537_15	33035.JPJF01000023_gene3230	488.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0109537_15	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0109537_15	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0109537_15	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0109537_15	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0109537_16	phrog_33	97.0	3.3e-28	distal tail protein Dit	tail
UniRef90	UHGV-0109537_16	UniRef90_A0A844KEE5	143.0	1.99e-38	Phage tail protein	N/A
eggNOG-mapper	UHGV-0109537_16	1232452.BAIB02000007_gene1615	146.0	2.93e-40	phage tail	N/A
Pfam	UHGV-0109537_16	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0109537_16	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0109537_16	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0109537_16	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0109537_17	K11499	53.5	8.1e-16	CENPF; centromere protein F	N/A
PHROG	UHGV-0109537_17	phrog_1533	356.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0109537_17	UniRef90_A0A373N0I0	1285.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0109537_17	742740.HMPREF9474_01203	464.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0109537_17	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0109537_17	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0109537_17	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-0109537_19	phrog_88	84.9	1e-24	major tail protein	tail
UniRef90	UHGV-0109537_19	UniRef90_A0A416ZS16	402.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0109537_19	1201292.DR75_1633	53.1	0.00000701	N/A	N/A
NCBIFam	UHGV-0109537_19	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0109537_19	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0109537_20	phrog_5	46.7	0.00000000000089	tail completion or Neck1 protein	connector
UniRef90	UHGV-0109537_20	UniRef90_D4M595	113.0	4.67e-30	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-0109537_20	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0109537_20	TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0109537_21	phrog_78	44.9	0.0000000000023	tail terminator	connector
structural_annotation	UHGV-0109537_21	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-0109537_22	UniRef90_UPI00189B1559	139.0	1.20999e-40	phage head closure protein	N/A
NCBIFam	UHGV-0109537_22	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0109537_22	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0109537_23	phrog_749	40.8	0.000000000039	N/A	unknown function
PHROG	UHGV-0109537_24	phrog_10	77.7	1.3e-22	major head protein	head and packaging
UniRef90	UHGV-0109537_24	UniRef90_A0A373N0L7	738.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0109537_24	1232452.BAIB02000007_gene1625	510.0	0	Phage capsid family	N/A
Pfam	UHGV-0109537_24	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0109537_24	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0109537_24	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0109537_24	PF05065,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0109537_25	K01358	107.7	1.6e-31	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0109537_25	phrog_94	187.1	0	head maturation protease	head and packaging
UniRef90	UHGV-0109537_25	UniRef90_A0A416ZS51	498.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0109537_25	1235792.C808_00085	224.0	0	Clp protease	N/A
Pfam	UHGV-0109537_25	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0109537_25	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0109537_25	PF00574,MF_00444,NF011089,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0109537_26	phrog_12	79.3	3.4e-23	portal protein	head and packaging
UniRef90	UHGV-0109537_26	UniRef90_A0A416ZRW1	746.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0109537_26	1232452.BAIB02000007_gene1627	362.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0109537_26	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0109537_26	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0109537_26	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0109537_27	phrog_9	274.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0109537_27	UniRef90_A0A373MZZ0	1116.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0109537_27	1232452.BAIB02000007_gene1629	568.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0109537_27	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0109537_27	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0109537_27	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0109537_27	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0109537_28	phrog_5110	92.4	3.2e-27	terminase small subunit	head and packaging
UniRef90	UHGV-0109537_28	UniRef90_A0A371IJQ7	86.7	6.29e-20	RNA polymerase subunit sigma-70	N/A
eggNOG-mapper	UHGV-0109537_28	349161.Dred_2608	78.6	1.29e-17	N/A	N/A
Pfam	UHGV-0109537_28	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0109537_28	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0109537_29	K07451	45.9	0.0000000000011	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0109537_29	phrog_119	78.9	6.6e-23	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0109537_29	UniRef90_A0A373N028	226.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0109537_29	1232452.BAIB02000007_gene1631	96.3	2.26e-24	HNH nucleases	N/A
Pfam	UHGV-0109537_29	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0109537_29	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0109537_30	phrog_36	73.3	4.1e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0109537_30	UniRef90_A0A373MZQ3	238.0	0	N/A	N/A
eggNOG-mapper	UHGV-0109537_30	658655.HMPREF0988_02569	100.0	3.02e-25	sigma factor activity	N/A
Pfam	UHGV-0109537_30	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0109537_30	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0109537_30	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0109537_33	phrog_16351	44.6	0.0000000000023	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0109537_33	UniRef90_A0A894KBW2	62.0	0.000000000361	LexA_DNA_bind domain-containing protein	N/A
eggNOG-mapper	UHGV-0109537_33	658655.HMPREF0988_00866	95.9	2.94e-24	N/A	N/A
PHROG	UHGV-0109537_34	phrog_98	55.7	8.6e-16	N/A	unknown function
UniRef90	UHGV-0109537_34	UniRef90_A0A3G8F867	53.5	0.00000274	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0109537_34	565653.EGBG_00901	54.3	0.00000063	YopX protein	N/A
Pfam	UHGV-0109537_34	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-0109537_34	PF09643,TIGR01671	N/A	N/A	N/A	N/A
Pfam	UHGV-0109537_36	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-0109537_36	PF02796,NF040595	N/A	N/A	N/A	N/A
KOfam	UHGV-0109537_38	K03111	126.2	4.4e-37	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0109537_38	phrog_44	128.5	5.6e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0109537_38	UniRef90_A0A373N003	275.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0109537_38	1256908.HMPREF0373_03133	199.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0109537_38	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0109537_38	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0109537_38	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0109537_38	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0109537_38	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
UniRef90	UHGV-0109537_39	UniRef90_A0A373N0F2	133.0	3.79e-39	Winged helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0109537_39	PF13412	N/A	N/A	Winged helix-turn-helix DNA-binding	HTH_24
COG	UHGV-0109537_39	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0109537_39	PF01726,MF_00732,NF041852,COG0640	N/A	N/A	N/A	N/A
PHROG	UHGV-0109537_40	phrog_15077	116.7	4e-34	N/A	unknown function
UniRef90	UHGV-0109537_40	UniRef90_A5ZPN2	162.0	3.67e-42	N/A	N/A
eggNOG-mapper	UHGV-0109537_40	97139.C824_05986	234.0	0	N/A	N/A
structural_annotation	UHGV-0109537_40	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-0109537_41	phrog_8470	376.0	0	N/A	unknown function
UniRef90	UHGV-0109537_41	UniRef90_UPI001D086F83	907.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0109537_41	1235792.C808_03081	1070.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0109537_41	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0109537_41	PF14284	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0109537_42	1235792.C808_00065	220.0	0	N/A	N/A
KOfam	UHGV-0109537_43	K03469	41.2	0.000000000028	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0109537_43	phrog_531	42.3	0.000000000013	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0109537_43	UniRef90_A0A373MZB7	288.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0109537_43	1268635.Loa_01114	55.1	0.000000131	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0109537_43	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0109537_43	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0109537_43	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0109537_44	phrog_3584	148.5	4.2039e-44	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0109537_44	1280698.AUJS01000007_gene1013	302.0	0	N/A	N/A
structural_annotation	UHGV-0109537_44	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0109537_47	phrog_36464	40.3	0.000000000062	N/A	unknown function
eggNOG-mapper	UHGV-0109537_47	1235798.C817_05488	56.2	0.00000000391	N/A	N/A
KOfam	UHGV-0109537_49	K18830	56.2	8.3e-16	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0109537_49	phrog_8	45.9	0.00000000000053	transcriptional regulator	transcription regulation
UniRef90	UHGV-0109537_49	UniRef90_A0A416ZRZ3	243.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0109537_49	445972.ANACOL_03315	120.0	1.83e-33	N/A	N/A
Pfam	UHGV-0109537_49	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0109537_49	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0109537_49	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0109537_51	K11062	41.0	0.00000000002	entD; probable enterotoxin D	N/A
PHROG	UHGV-0109537_51	phrog_38135	70.5	2.5e-20	N/A	unknown function
UniRef90	UHGV-0109537_51	UniRef90_A0A416ZS49	437.0	0	N/A	N/A
eggNOG-mapper	UHGV-0109537_51	1280686.AUKE01000005_gene2337	83.6	3.36e-16	N/A	N/A
Pfam	UHGV-0109537_51	PF14020	N/A	N/A	N/A	DUF4236
Pfam	UHGV-0109537_51	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
structural_annotation	UHGV-0109537_51	PF14020	N/A	N/A	N/A	N/A
KOfam	UHGV-0109537_52	K14059	166.4	0	int; integrase	N/A
PHROG	UHGV-0109537_52	phrog_1	154.7	1.4013e-45	integrase	integration and excision
UniRef90	UHGV-0109537_52	UniRef90_A0A373N009	719.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0109537_52	33035.JPJF01000071_gene4457	398.0	0	Phage integrase family	N/A
Pfam	UHGV-0109537_52	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0109537_52	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0109537_52	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A