UHGV-0109588 (vOTU-096802)

Viral Genome: UHGV-0109588

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0109588
vOTU ID	vOTU-096802
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_256145
Associated BioSample	SAMEA3708872
Viral genome confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	55.62 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.982
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.77
Jumbo phage	No

Genome content
Genome length (bp)	36,910
GC content	55.12%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	62
CDS density	92%
Average CDS length (bps)	548.08
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 55.62)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0109588_1	K16628	209.6	0	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0109588_1	phrog_819	112.6	0	tail protein	tail
UniRef90	UHGV-0109588_1	UniRef90_UPI00068BE71D	316.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0109588_1	1519439.JPJG01000060_gene1892	316.0	0	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0109588_1	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0109588_1	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0109588_1	PF10651,NF033814	N/A	N/A	N/A	N/A
PHROG	UHGV-0109588_2	phrog_15239	77.3	1.6e-22	N/A	unknown function
eggNOG-mapper	UHGV-0109588_2	1449126.JQKL01000003_gene1694	52.0	0.000000446	N/A	N/A
PHROG	UHGV-0109588_3	phrog_1357	258.2	0	major head protein	head and packaging
UniRef90	UHGV-0109588_3	UniRef90_A0A2V2F8C5	492.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0109588_3	1449126.JQKL01000003_gene1695	460.0	0	N/A	N/A
NCBIFam	UHGV-0109588_3	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0109588_3	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0109588_4	phrog_13908	260.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0109588_4	1410650.JHWL01000003_gene2831	100.0	3.11e-21	N/A	N/A
structural_annotation	UHGV-0109588_5	NF011128,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0109588_6	phrog_156	312.3	0	portal protein	head and packaging
UniRef90	UHGV-0109588_6	UniRef90_A0A8D9UH10	690.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0109588_6	748224.HMPREF9436_01396	510.0	0	N/A	N/A
structural_annotation	UHGV-0109588_6	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-0109588_7	K06909	98.8	7.5e-29	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0109588_7	phrog_979	192.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0109588_7	UniRef90_A0A1Y4WJ48	810.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0109588_7	411483.FAEPRAA2165_01044	597.0	0	Terminase-like family	N/A
Pfam	UHGV-0109588_7	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0109588_7	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0109588_7	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0109588_8	phrog_606	75.3	8.8e-22	terminase small subunit	head and packaging
UniRef90	UHGV-0109588_8	UniRef90_UPI00195648BB	154.0	1.4013e-45	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0109588_8	397290.C810_05185	127.0	3.38e-35	DNA-packaging protein gp3	N/A
Pfam	UHGV-0109588_8	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0109588_8	PF16677	N/A	N/A	N/A	N/A
PHROG	UHGV-0109588_13	phrog_599	44.6	0.0000000000029	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0109588_13	UniRef90_A0A315Y4I9	107.0	1.7e-28	Lar family restriction alleviation protein	N/A
Pfam	UHGV-0109588_13	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0109588_13	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
structural_annotation	UHGV-0109588_13	TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-0109588_14	phrog_38832	68.4	8.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-0109588_14	445972.ANACOL_00165	72.4	0.000000000000423	N/A	N/A
KOfam	UHGV-0109588_15	K17398	77.1	2.1e-33	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	N/A
PHROG	UHGV-0109588_15	phrog_116	65.3	7.7e-29	DNA methyltransferase	other
UniRef90	UHGV-0109588_15	UniRef90_A0A1Q6RQI3	393.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0109588_15	1235797.C816_01614	293.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
Pfam	UHGV-0109588_15	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0109588_15	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0109588_15	PF00145,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0109588_17	K01160	64.4	3.4e-18	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0109588_17	phrog_140	121.8	4.8e-36	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0109588_17	UniRef90_A0A7X9D805	112.0	2.12e-29	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0109588_17	1095750.HMPREF9970_1673	92.8	2.83e-22	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0109588_17	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0109588_17	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0109588_17	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0109588_18	phrog_111	162.2	0	DNA methyltransferase	other
UniRef90	UHGV-0109588_18	UniRef90_A0A316S635	231.0	0	Adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0109588_18	760568.Desku_0784	192.0	0	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-0109588_18	oMTase_00015	197.5	0	orphan methyltransferase	RM
Pfam	UHGV-0109588_18	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0109588_18	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
PHROG	UHGV-0109588_21	phrog_9804	162.4	0	N/A	unknown function
UniRef90	UHGV-0109588_21	UniRef90_UPI0018976F94	199.0	0	replicative helicase loader/inhibitor	N/A
eggNOG-mapper	UHGV-0109588_21	1121344.JHZO01000003_gene981	198.0	0	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-0109588_21	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-0109588_21	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0109588_22	phrog_15768	94.6	9e-30	N/A	unknown function
UniRef90	UHGV-0109588_22	UniRef90_A0A8D9PDU3	237.0	0	N/A	N/A
eggNOG-mapper	UHGV-0109588_22	642492.Clole_0798	80.9	0.00000000000000119	N/A	N/A
AcrCatalog	UHGV-0109588_22	cluster_38323	85.5	2.87e-22	NA	N/A
Pfam	UHGV-0109588_22	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-0109588_22	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0109588_22	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0109588_23	K03111	137.1	2.2e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0109588_23	phrog_44	139.9	1.70006e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0109588_23	UniRef90_A0A352RPR0	176.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0109588_23	1007096.BAGW01000023_gene151	175.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0109588_23	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0109588_23	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0109588_23	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0109588_23	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0109588_23	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0109588_24	K07451	45.0	0.0000000000021	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0109588_24	phrog_7370	52.9	0.0000000000000062	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0109588_24	UniRef90_UPI001C122365	127.0	3.96e-36	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0109588_24	445972.ANACOL_01826	92.0	4.61e-23	HNH nucleases	N/A
Pfam	UHGV-0109588_24	PF01844	N/A	N/A	HNH endonuclease	HNH
PHROG	UHGV-0109588_25	phrog_72	66.4	4.6e-19	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0109588_25	UniRef90_A0A8D9PDS2	180.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0109588_25	445972.ANACOL_01825	156.0	0	N/A	N/A
structural_annotation	UHGV-0109588_25	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0109588_26	phrog_7838	147.0	1.30321e-43	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0109588_26	UniRef90_A0A8D9UGW3	262.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0109588_26	742767.HMPREF9456_02397	188.0	0	N/A	N/A
structural_annotation	UHGV-0109588_26	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-0109588_28	phrog_4973	48.5	0.00000000000016	N/A	unknown function
UniRef90	UHGV-0109588_28	UniRef90_A0A3D3Y0P8	67.8	0.000000000000231	DNA-binding protein	N/A
Pfam	UHGV-0109588_28	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0109588_28	PF14090,MF_01586,TIGR00373,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-0109588_33	K22299	40.8	0.000000000052	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0109588_33	phrog_2967	48.8	0.00000000000014	transcriptional regulator	transcription regulation
Pfam	UHGV-0109588_33	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0109588_33	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0109588_33	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0109588_34	K07448	122.6	3.5e-36	mrr; restriction system protein	N/A
PHROG	UHGV-0109588_34	phrog_19856	64.7	9.8e-19	N/A	unknown function
UniRef90	UHGV-0109588_34	UniRef90_UPI00068633D6	159.0	1.96182e-44	restriction endonuclease	N/A
eggNOG-mapper	UHGV-0109588_34	1280668.ATVT01000004_gene2326	120.0	2.56e-31	Restriction endonuclease	N/A
PADLOC	UHGV-0109588_34	ZorD1_00005	63.4	3.7e-18	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0109588_34	PF04471	N/A	N/A	Restriction endonuclease	Mrr_cat
COG	UHGV-0109588_34	COG1787	N/A	N/A	Endonuclease, HJR/Mrr/RecB family	N/A
UniRef90	UHGV-0109588_35	UniRef90_A0A3D3Y0G5	94.0	8.81e-22	HTH cro/C1-type domain-containing protein	N/A
structural_annotation	UHGV-0109588_35	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0109588_36	PF03885	N/A	N/A	N/A	N/A
Pfam	UHGV-0109588_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0109588_38	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0109588_38	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0109588_39	K06400	271.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0109588_39	phrog_95	290.3	0	integrase	integration and excision
UniRef90	UHGV-0109588_39	UniRef90_A0A3A9I9T1	356.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0109588_39	357809.Cphy_2997	286.0	0	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
Pfam	UHGV-0109588_39	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0109588_39	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0109588_39	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0109588_39	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0109588_40	1232443.BAIA02000078_gene6	72.8	0.00000000000000518	N/A	N/A
eggNOG-mapper	UHGV-0109588_41	397290.C810_05215	55.8	0.0000000976	N/A	N/A
structural_annotation	UHGV-0109588_41	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0109588_42	phrog_20016	198.0	0	N/A	unknown function
UniRef90	UHGV-0109588_42	UniRef90_A0A285PT46	204.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0109588_42	397290.C810_05214	171.0	0	N/A	N/A
structural_annotation	UHGV-0109588_42	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0109588_43	phrog_16490	105.2	2.4e-32	N/A	unknown function
eggNOG-mapper	UHGV-0109588_43	1408437.JNJN01000043_gene803	125.0	2.7e-32	N/A	N/A
PHROG	UHGV-0109588_44	phrog_22984	86.1	3.3e-25	N/A	unknown function
PHROG	UHGV-0109588_45	phrog_21718	107.3	1.3e-31	N/A	unknown function
eggNOG-mapper	UHGV-0109588_45	397290.C810_05210	79.3	1.37e-16	N/A	N/A
PHROG	UHGV-0109588_46	phrog_3754	114.3	8.5e-34	N/A	unknown function
eggNOG-mapper	UHGV-0109588_46	1226322.HMPREF1545_00073	164.0	0	N/A	N/A
Pfam	UHGV-0109588_48	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
COG	UHGV-0109588_48	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0109588_48	PF04545,MF_00674,NF008895,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-0109588_49	K08640	99.3	6.2e-29	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0109588_49	phrog_18955	156.1	0	N/A	unknown function
UniRef90	UHGV-0109588_49	UniRef90_UPI001C035E39	592.0	0	D-Ala-D-Ala carboxypeptidase family metallohydrolase	N/A
eggNOG-mapper	UHGV-0109588_49	1235797.C816_04171	330.0	0	Peptidase M15	N/A
Pfam	UHGV-0109588_49	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
Pfam	UHGV-0109588_49	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0109588_49	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0109588_49	PF09992,PF08291,COG4632,COG3108	N/A	N/A	N/A	N/A
PHROG	UHGV-0109588_50	phrog_13256	73.2	2.3e-21	N/A	unknown function
eggNOG-mapper	UHGV-0109588_50	1226322.HMPREF1545_00132	72.0	6.44e-16	N/A	N/A
PHROG	UHGV-0109588_51	phrog_1863	65.4	5.7e-19	N/A	unknown function
eggNOG-mapper	UHGV-0109588_51	748224.HMPREF9436_00408	97.4	1.41e-25	N/A	N/A
eggNOG-mapper	UHGV-0109588_53	657322.FPR_21910	52.8	0.0000013	N/A	N/A
UniRef90	UHGV-0109588_54	UniRef90_A0A096B066	98.2	4.08e-19	Mtd_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0109588_54	1226322.HMPREF1545_02881	60.8	0.000000232	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0109588_54	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0109588_55	phrog_18725	92.2	4.4e-27	N/A	unknown function
eggNOG-mapper	UHGV-0109588_55	1226322.HMPREF1545_00062	108.0	2.54e-27	N/A	N/A
structural_annotation	UHGV-0109588_55	PF13754,COG2372	N/A	N/A	N/A	N/A
KOfam	UHGV-0109588_56	K01361	56.3	2.3e-16	E3.4.21.96; lactocepin [EC:3.4.21.96]	N/A
PHROG	UHGV-0109588_56	phrog_11157	233.8	0	N/A	unknown function
UniRef90	UHGV-0109588_56	UniRef90_UPI001C10C6DC	389.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0109588_56	1256908.HMPREF0373_00674	295.0	0	N/A	N/A
Pfam	UHGV-0109588_56	PF19077	N/A	N/A	Bacterial Ig-like domain	Big_13
Pfam	UHGV-0109588_56	PF09136	N/A	N/A	Glucodextranase, domain B	Glucodextran_B
COG	UHGV-0109588_56	COG3292	N/A	N/A	Periplasmic ligand-binding sensor domain	N/A
structural_annotation	UHGV-0109588_56	PF09136,PF13205,PF13754,MF_04116,NF032891,COG2372,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0109588_58	phrog_13879	515.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0109588_58	1235797.C816_02659	716.0	0	N/A	N/A
structural_annotation	UHGV-0109588_58	PF14594,PF06588,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0109588_59	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0109588_60	phrog_6900	248.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0109588_60	UniRef90_A0A3D1JBH2	252.0	0	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-0109588_60	1499683.CCFF01000017_gene2565	284.0	0	tape measure	N/A
COG	UHGV-0109588_60	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0109588_60	PF20155,COG3941	N/A	N/A	N/A	N/A
UniRef90	UHGV-0109588_61	UniRef90_A0A285PXU7	72.4	0.000000000000107	Consensus disorder prediction	N/A
eggNOG-mapper	UHGV-0109588_62	1504822.CCNO01000012_gene492	106.0	5.3e-28	N/A	N/A