UHGV-0109918 (vOTU-160355)

Viral Genome: UHGV-0109918

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0109918
vOTU ID	vOTU-160355
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_248251
Associated BioSample	SAMEA3708809
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.16 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9619
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.6
Jumbo phage	No

Genome content
Genome length (bp)	27,851
GC content	36.48%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	35
CDS density	90%
Average CDS length (bps)	713.06
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 62.16)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0109918_1	K01972	655.3	0	E6.5.1.2, ligA, ligB; DNA ligase (NAD+) [EC:6.5.1.2]	N/A
PHROG	UHGV-0109918_1	phrog_3869	621.3	0	NAD-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0109918_1	UniRef90_A0A1Q6SR21	1242.0	0	DNA ligase	N/A
eggNOG-mapper	UHGV-0109918_1	397291.C804_02303	1028.0	0	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA	N/A
Pfam	UHGV-0109918_1	PF01653	N/A	N/A	NAD-dependent DNA ligase adenylation domain	DNA_ligase_aden
Pfam	UHGV-0109918_1	PF03120	N/A	N/A	NAD-dependent DNA ligase OB-fold domain	DNA_ligase_OB
Pfam	UHGV-0109918_1	PF14520	N/A	N/A	Helix-hairpin-helix domain	HHH_5
Pfam	UHGV-0109918_1	PF12826	N/A	N/A	Helix-hairpin-helix motif	HHH_2
Pfam	UHGV-0109918_1	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
NCBIFam	UHGV-0109918_1	NF005932.1	N/A	N/A	NAD-dependent DNA ligase LigA	N/A
COG	UHGV-0109918_1	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
HAMAP	UHGV-0109918_1	MF_01588	N/A	N/A	DNA ligase [ligA]	N/A
structural_annotation	UHGV-0109918_1	PF01653,PF03120,PF00533,MF_01588,NF005932,COG0272	N/A	N/A	N/A	N/A
KOfam	UHGV-0109918_2	K00651	487.8	0	metA; homoserine O-succinyltransferase/O-acetyltransferase [EC:2.3.1.46 2.3.1.31]	N/A
UniRef90	UHGV-0109918_2	UniRef90_R7R015	622.0	0	Homoserine O-acetyltransferase	N/A
eggNOG-mapper	UHGV-0109918_2	397291.C804_02304	556.0	0	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine	N/A
Pfam	UHGV-0109918_2	PF04204	N/A	N/A	Homoserine O-succinyltransferase	HTS
NCBIFam	UHGV-0109918_2	TIGR01001.1	N/A	N/A	homoserine O-succinyltransferase	N/A
COG	UHGV-0109918_2	COG1897	N/A	N/A	Homoserine O-succinyltransferase	N/A
HAMAP	UHGV-0109918_2	MF_00295	N/A	N/A	Homoserine O-succinyltransferase [metAS]	N/A
structural_annotation	UHGV-0109918_2	PF04204,MF_00295,TIGR01001,COG1897	N/A	N/A	N/A	N/A
PHROG	UHGV-0109918_3	phrog_33130	89.1	2.7e-26	N/A	unknown function
UniRef90	UHGV-0109918_3	UniRef90_A0A3B9CD52	110.0	4.14e-30	S1-like domain-containing protein	N/A
structural_annotation	UHGV-0109918_3	PF10922,MF_00839	N/A	N/A	N/A	N/A
KOfam	UHGV-0109918_4	K06909	413.7	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0109918_4	phrog_3717	183.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0109918_4	UniRef90_A0A1C7I418	711.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0109918_4	33035.JPJF01000106_gene3136	711.0	0	Terminase small subunit	N/A
Pfam	UHGV-0109918_4	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-0109918_4	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0109918_4	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0109918_4	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0109918_4	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0109918_4	PF04466,PF17288,PF03592,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0109918_5	phrog_1233	87.7	1.5e-25	N/A	unknown function
UniRef90	UHGV-0109918_5	UniRef90_UPI001C39EFB9	135.0	1.4e-38	Dienelactone hydrolase family protein	N/A
eggNOG-mapper	UHGV-0109918_5	357809.Cphy_2967	110.0	2.83e-29	N/A	N/A
PHROG	UHGV-0109918_6	phrog_533	244.9	0	portal protein	head and packaging
UniRef90	UHGV-0109918_6	UniRef90_A0A1C6CDM8	405.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0109918_6	33035.JPJF01000106_gene3135	389.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0109918_6	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0109918_7	K01795	44.0	0.00000000000029	algG; mannuronan 5-epimerase [EC:5.1.3.37]	N/A
eggNOG-mapper	UHGV-0109918_7	86416.Clopa_2781	146.0	2.73e-34	Pectate lyase superfamily protein	N/A
Pfam	UHGV-0109918_7	PF13229	N/A	N/A	Right handed beta helix region	Beta_helix
NCBIFam	UHGV-0109918_7	TIGR03804.1	N/A	N/A	parallel beta-helix repeat protein	N/A
eggNOG-mapper	UHGV-0109918_8	397291.C804_01000	81.6	1.16e-19	N/A	N/A
PHROG	UHGV-0109918_12	phrog_199	82.6	4.9e-24	holin	lysis
UniRef90	UHGV-0109918_12	UniRef90_A0A2N5PMH4	199.0	0	Holin	N/A
eggNOG-mapper	UHGV-0109918_12	742740.HMPREF9474_02333	193.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0109918_12	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0109918_12	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0109918_12	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0109918_12	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0109918_13	phrog_556	55.9	6.2e-16	minor head protein	head and packaging
eggNOG-mapper	UHGV-0109918_13	397290.C810_05200	104.0	5.33e-26	N/A	N/A
Pfam	UHGV-0109918_13	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0109918_13	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0109918_14	phrog_581	228.4	0	minor head protein	head and packaging
UniRef90	UHGV-0109918_14	UniRef90_UPI001D067B9F	206.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0109918_14	1235790.C805_00050	279.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0109918_14	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0109918_14	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0109918_14	PF06152	N/A	N/A	N/A	N/A
UniRef90	UHGV-0109918_16	UniRef90_A0A3R6NB90	66.6	0.000000000000203	Conjugal transfer protein	N/A
eggNOG-mapper	UHGV-0109918_16	1235835.C814_02704	62.8	0.00000000000155	Cysteine-rich KTR	N/A
Pfam	UHGV-0109918_16	PF14205	N/A	N/A	Cysteine-rich KTR	Cys_rich_KTR
structural_annotation	UHGV-0109918_16	PF14205,COG4416	N/A	N/A	N/A	N/A
PHROG	UHGV-0109918_17	phrog_194	83.6	3.2e-24	head scaffolding protein	head and packaging
UniRef90	UHGV-0109918_17	UniRef90_UPI001D14C9C8	154.0	8.68805e-44	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0109918_17	476272.RUMHYD_01775	135.0	4.1e-37	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0109918_17	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0109918_17	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-0109918_18	phrog_247	294.3	0	major head protein	head and packaging
UniRef90	UHGV-0109918_18	UniRef90_A0A417A964	528.0	0	Phage coat protein	N/A
eggNOG-mapper	UHGV-0109918_18	536233.CLO_0886	421.0	0	N/A	N/A
Pfam	UHGV-0109918_18	PF20036	N/A	N/A	Major capsid protein 13-like	Gp13-like
COG	UHGV-0109918_18	COG1106	N/A	N/A	ATPase/GTPase, AAA15 family	N/A
structural_annotation	UHGV-0109918_18	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0109918_19	phrog_541	99.9	2e-29	head-tail adaptor	connector
eggNOG-mapper	UHGV-0109918_19	33035.JPJF01000106_gene3131	75.1	0.000000000000003	N/A	N/A
PHROG	UHGV-0109918_20	phrog_3366	80.4	2.6e-23	N/A	unknown function
eggNOG-mapper	UHGV-0109918_20	645991.Sgly_0343	52.0	0.00000132	N/A	N/A
Pfam	UHGV-0109918_20	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0109918_20	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0109918_21	phrog_3266	48.1	0.00000000000019	tail completion	connector
structural_annotation	UHGV-0109918_21	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0109918_22	phrog_3099	114.4	1.1e-33	N/A	unknown function
eggNOG-mapper	UHGV-0109918_22	33035.JPJF01000106_gene3126	140.0	1.92e-40	N/A	N/A
structural_annotation	UHGV-0109918_22	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0109918_23	phrog_11299	106.9	1.9e-31	N/A	unknown function
eggNOG-mapper	UHGV-0109918_23	1449050.JNLE01000003_gene3883	69.3	0.00000000000061	N/A	N/A
structural_annotation	UHGV-0109918_23	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0109918_24	phrog_706	129.3	2.6e-38	N/A	unknown function
UniRef90	UHGV-0109918_24	UniRef90_A0A1I0K8S4	183.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0109918_24	1449050.JNLE01000003_gene3882	173.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0109918_24	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0109918_24	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0109918_25	phrog_1535	210.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0109918_25	UniRef90_A0A1C6JZ05	231.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0109918_25	33035.JPJF01000093_gene2243	256.0	0	phage tail tape measure protein	N/A
COG	UHGV-0109918_25	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-0109918_26	phrog_1194	70.8	1.9e-20	N/A	unknown function
eggNOG-mapper	UHGV-0109918_26	483218.BACPEC_01144	70.5	0.000000000000122	N/A	N/A
Pfam	UHGV-0109918_26	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0109918_26	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0109918_27	phrog_18190	245.4	0	N/A	unknown function
UniRef90	UHGV-0109918_27	UniRef90_A0A396NP65	181.0	0	Tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0109918_27	1304866.K413DRAFT_3048	151.0	1.4e-37	N/A	N/A
structural_annotation	UHGV-0109918_27	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-0109918_29	UniRef90_A0A1Y4UTZ9	51.6	0.000000191	XkdX family protein	N/A
Pfam	UHGV-0109918_29	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
PHROG	UHGV-0109918_32	phrog_443	51.6	0.000000000000029	holin	lysis
UniRef90	UHGV-0109918_32	UniRef90_UPI000C088FD8	97.4	2.66e-25	holin	N/A
eggNOG-mapper	UHGV-0109918_32	1469948.JPNB01000002_gene3855	94.4	7.41e-25	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0109918_32	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0109918_32	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-0109918_33	K02395	87.5	3e-25	flgJ; peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-0109918_33	phrog_3513	145.5	5.10073e-43	endolysin	lysis
UniRef90	UHGV-0109918_33	UniRef90_A0A1Q6ST55	474.0	0	LYZ2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0109918_33	411902.CLOBOL_03862	172.0	0	COG NOG16320 non supervised orthologous group	N/A
Pfam	UHGV-0109918_33	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
Pfam	UHGV-0109918_33	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0109918_33	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-0109918_33	PF01471,PF01832,NF038016,COG1705,COG3409	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0109918_34	595460.RRSWK_03491	127.0	4.73e-31	N/A	N/A
PHROG	UHGV-0109918_35	phrog_19315	89.1	5.4e-26	N/A	unknown function
UniRef90	UHGV-0109918_35	UniRef90_K9D423	51.2	0.00000581	DZANK-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0109918_35	1121929.KB898688_gene10	89.4	1.02e-19	Rubrerythrin	N/A
COG	UHGV-0109918_35	COG1592	N/A	N/A	Rubrerythrin	N/A