UHGV-0111259 (vOTU-155524)

Viral Genome: UHGV-0111259

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0111259
vOTU ID	vOTU-155524
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_237838
Associated BioSample	SAMEA3708693
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.17 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.979
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.09
Jumbo phage	No

Genome content
Genome length (bp)	43,659
GC content	37.49%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	61
CDS density	92%
Average CDS length (bps)	657.84
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 54.17)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0111259_1	phrog_4433	229.3	0	N/A	unknown function
eggNOG-mapper	UHGV-0111259_1	573061.Clocel_3578	138.0	1.21e-36	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0111259_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0111259_1	NF000318	N/A	N/A	N/A	N/A
PHROG	UHGV-0111259_7	phrog_373	147.4	1.09301e-43	anti-repressor	transcription regulation
UniRef90	UHGV-0111259_7	UniRef90_A0A1C5RZZ2	377.0	0	Phage anti-repressor protein	N/A
eggNOG-mapper	UHGV-0111259_7	1347368.HG964404_gene4981	198.0	0	ORF6N domain	N/A
Pfam	UHGV-0111259_7	PF10543	N/A	N/A	ORF6N domain	ORF6N
Pfam	UHGV-0111259_7	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0111259_7	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0111259_7	PF10552,PF10543,TIGR02681,COG3646	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0111259_8	PF06004	N/A	N/A	N/A	N/A
PHROG	UHGV-0111259_9	phrog_2657	126.8	3.9e-38	transcriptional regulator	transcription regulation
UniRef90	UHGV-0111259_9	UniRef90_UPI0015703D70	354.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0111259_9	411459.RUMOBE_01391	340.0	0	N/A	N/A
Pfam	UHGV-0111259_9	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-0111259_9	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0111259_9	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0111259_9	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
KOfam	UHGV-0111259_12	K22300	48.4	0.00000000000021	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0111259_12	phrog_2967	52.3	0.000000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-0111259_12	UniRef90_A0A416RWS4	158.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0111259_12	397290.C810_01441	95.9	4.94e-24	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0111259_12	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0111259_12	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0111259_12	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0111259_15	K07705	132.7	2.8e-39	lytT, lytR; two-component system, LytTR family, response regulator LytT	N/A
PHROG	UHGV-0111259_15	phrog_8810	123.0	2.3e-36	N/A	unknown function
UniRef90	UHGV-0111259_15	UniRef90_UPI001D0E4226	339.0	0	LytTR family DNA-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0111259_15	1297617.JPJD01000032_gene2091	131.0	9.41e-35	N/A	N/A
Pfam	UHGV-0111259_15	PF00072	N/A	N/A	Response regulator receiver domain	Response_reg
Pfam	UHGV-0111259_15	PF04397	N/A	N/A	LytTr DNA-binding domain	LytTR
COG	UHGV-0111259_15	COG3279	N/A	N/A	DNA-binding response regulator, LytR/AlgR family	N/A
structural_annotation	UHGV-0111259_15	PF04397,PF00072,MF_00981,NF010684,COG3279	N/A	N/A	N/A	N/A
KOfam	UHGV-0111259_16	K01447	111.2	1.4e-32	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0111259_16	phrog_3088	166.7	0	amidase	lysis
UniRef90	UHGV-0111259_16	UniRef90_A0A173WJQ4	354.0	0	N-acetylmuramoyl-L-alanine amidase CwlH	N/A
eggNOG-mapper	UHGV-0111259_16	457412.RSAG_02159	249.0	0	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0111259_16	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0111259_16	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-0111259_16	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0111259_16	PF01510,PF08230,NF008758,COG5632	N/A	N/A	N/A	N/A
KOfam	UHGV-0111259_17	K04763	213.8	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0111259_17	phrog_1	164.5	0	integrase	integration and excision
UniRef90	UHGV-0111259_17	UniRef90_A0A417CA24	447.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0111259_17	1235793.C809_01951	232.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0111259_17	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0111259_17	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0111259_17	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0111259_17	PF00589,PF02899,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
PHROG	UHGV-0111259_19	phrog_6616	706.0	0	tail protein	tail
UniRef90	UHGV-0111259_19	UniRef90_R5QUN9	914.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0111259_19	1121866.AUGK01000003_gene1439	302.0	0	Phage minor structural protein	N/A
COG	UHGV-0111259_19	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0111259_19	PF05113,PF18957,PF16407,NF033848,NF011782,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0111259_20	phrog_1194	122.5	1.9e-36	N/A	unknown function
eggNOG-mapper	UHGV-0111259_20	1117108.PAALTS15_13512	74.3	0.00000000000000168	N/A	N/A
Pfam	UHGV-0111259_20	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0111259_20	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0111259_21	phrog_2657	216.8	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-0111259_21	UniRef90_A0A373NQ98	431.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0111259_21	742740.HMPREF9474_03525	313.0	0	phage regulatory protein, rha family	N/A
Pfam	UHGV-0111259_21	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-0111259_21	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0111259_21	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0111259_21	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
KOfam	UHGV-0111259_23	K09952	45.9	0.00000000000057	csn1, cas9; CRISPR-associated endonuclease Csn1 [EC:3.1.-.-]	N/A
PHROG	UHGV-0111259_23	phrog_2118	85.6	7.7e-25	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0111259_23	UniRef90_A0A373NQW5	201.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0111259_23	97139.C824_02826	87.0	9.91e-21	HNH endonuclease	N/A
Pfam	UHGV-0111259_23	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0111259_23	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0111259_23	PF14279	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0111259_24	PF01017,TIGR02890	N/A	N/A	N/A	N/A
PHROG	UHGV-0111259_25	phrog_463	84.5	1e-24	anti-repressor	transcription regulation
UniRef90	UHGV-0111259_25	UniRef90_A0A173UGN1	272.0	0	ORF6C domain	N/A
eggNOG-mapper	UHGV-0111259_25	476272.RUMHYD_01986	272.0	0	P22_AR N-terminal domain	N/A
Pfam	UHGV-0111259_25	PF10547	N/A	N/A	P22_AR N-terminal domain	P22_AR_N
Pfam	UHGV-0111259_25	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0111259_25	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0111259_25	PF10552,PF10547,COG3617	N/A	N/A	N/A	N/A
UniRef90	UHGV-0111259_26	UniRef90_UPI001ADDDCFE	57.4	0.00000000187	CopG family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0111259_26	663952.SDD27957_09060	46.2	0.0000073	N/A	N/A
PHROG	UHGV-0111259_28	phrog_215	68.6	1.6e-21	structural protein with Ig domain	head and packaging
UniRef90	UHGV-0111259_28	UniRef90_A0A839JXV0	122.0	1.63e-28	Ig domain-containing protein	N/A
eggNOG-mapper	UHGV-0111259_28	1449050.JNLE01000005_gene4607	80.1	0.000000000000179	Trypsin	N/A
Pfam	UHGV-0111259_28	PF02368	N/A	N/A	Bacterial Ig-like domain (group 2)	Big_2
COG	UHGV-0111259_28	COG0265	N/A	N/A	Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain	N/A
structural_annotation	UHGV-0111259_28	PF02368,PF11906,NF005261	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0111259_29	1235793.C809_00537	56.6	0.00000000129	N/A	N/A
eggNOG-mapper	UHGV-0111259_30	411473.RUMCAL_02525	150.0	1.4013e-45	N/A	N/A
eggNOG-mapper	UHGV-0111259_31	1304866.K413DRAFT_3400	85.9	1.73e-19	N/A	N/A
PHROG	UHGV-0111259_32	phrog_22444	75.6	6e-22	N/A	unknown function
UniRef90	UHGV-0111259_32	UniRef90_UPI001CF931D4	145.0	2.58e-37	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0111259_32	1121422.AUMW01000042_gene1260	157.0	2.22947e-42	DnaD domain protein	N/A
COG	UHGV-0111259_32	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0111259_32	PF05584,MF_01909,NF033788,COG1675	N/A	N/A	N/A	N/A
KOfam	UHGV-0111259_33	K07451	54.4	0.0000000000000022	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0111259_33	phrog_119	51.1	0.000000000000022	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0111259_33	UniRef90_A0A373NQX9	538.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0111259_33	1437425.CSEC_2012	99.4	3.07e-21	phage envelope protein	N/A
Pfam	UHGV-0111259_33	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0111259_33	COG5562	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0111259_34	658088.HMPREF0987_01134	89.7	4.35e-22	N/A	N/A
structural_annotation	UHGV-0111259_34	PF21076,NF002066	N/A	N/A	N/A	N/A
PHROG	UHGV-0111259_35	phrog_2657	198.1	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-0111259_35	UniRef90_A0A7G5N197	315.0	0	Rha family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0111259_35	33035.JPJF01000043_gene993	316.0	0	N/A	N/A
Pfam	UHGV-0111259_35	PF09669	N/A	N/A	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
NCBIFam	UHGV-0111259_35	TIGR02681.1	N/A	N/A	phage regulatory protein, Rha family	N/A
COG	UHGV-0111259_35	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
structural_annotation	UHGV-0111259_35	PF09669,TIGR02681,COG3646	N/A	N/A	N/A	N/A
PHROG	UHGV-0111259_36	phrog_28918	553.9	0	N/A	unknown function
UniRef90	UHGV-0111259_36	UniRef90_A0A1C5P271	342.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-0111259_36	97139.C824_02812	558.0	0	phage tail tape measure protein	N/A
COG	UHGV-0111259_36	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
eggNOG-mapper	UHGV-0111259_39	476272.RUMHYD_01968	142.0	3.37993e-41	N/A	N/A
structural_annotation	UHGV-0111259_39	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0111259_40	phrog_1129	84.0	1e-24	holin	lysis
UniRef90	UHGV-0111259_40	UniRef90_UPI001D072DD9	127.0	1.82e-36	phage holin family protein	N/A
eggNOG-mapper	UHGV-0111259_40	1304866.K413DRAFT_0135	126.0	8.75e-37	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0111259_40	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0111259_40	PF16079	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0111259_41	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0111259_42	476272.RUMHYD_01963	114.0	7.46e-30	N/A	N/A
structural_annotation	UHGV-0111259_43	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0111259_44	880070.Cycma_1221	176.0	0	lipolytic protein G-D-S-L family	N/A
COG	UHGV-0111259_44	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
structural_annotation	UHGV-0111259_44	PF10651,PF11476,NF007819,COG1621	N/A	N/A	N/A	N/A
PHROG	UHGV-0111259_45	phrog_19695	60.7	4.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-0111259_45	1232452.BAIB02000007_gene1611	91.7	1.07e-22	N/A	N/A
structural_annotation	UHGV-0111259_45	PF19714	N/A	N/A	N/A	N/A
PHROG	UHGV-0111259_46	phrog_1233	40.4	0.000000000048	N/A	unknown function
eggNOG-mapper	UHGV-0111259_46	397290.C810_01336	65.9	0.00000000000304	N/A	N/A
eggNOG-mapper	UHGV-0111259_48	1408437.JNJN01000043_gene802	166.0	0	N/A	N/A
PHROG	UHGV-0111259_49	phrog_16490	214.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0111259_49	658655.HMPREF0988_00917	175.0	0	N/A	N/A
PHROG	UHGV-0111259_51	phrog_21718	69.6	7.6e-21	N/A	unknown function
eggNOG-mapper	UHGV-0111259_51	476272.RUMHYD_01952	110.0	1.62e-28	N/A	N/A
UniRef90	UHGV-0111259_52	UniRef90_A0A373NQ83	154.0	0	Sigma-70 family RNA polymerase sigma factor	N/A
Pfam	UHGV-0111259_52	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-0111259_52	PF04545,MF_00674,NF001067,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0111259_53	phrog_937	59.7	2.4e-17	hemolysin	other
eggNOG-mapper	UHGV-0111259_54	476272.RUMHYD_01948	112.0	5.15e-31	N/A	N/A
PHROG	UHGV-0111259_56	phrog_29	142.9	2.40042e-42	major head protein	head and packaging
UniRef90	UHGV-0111259_56	UniRef90_A0A0E2H7J5	387.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0111259_56	1232443.BAIA02000078_gene29	289.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0111259_56	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0111259_56	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0111259_57	phrog_909	73.5	2.5e-21	major head protein	head and packaging
UniRef90	UHGV-0111259_57	UniRef90_K1TUL5	62.0	0.000000000501	N/A	N/A
eggNOG-mapper	UHGV-0111259_57	1497679.EP56_02915	68.9	0.000000000000117	N/A	N/A
structural_annotation	UHGV-0111259_57	PF02924	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0111259_58	1298920.KI911353_gene2662	54.7	0.00000212	N/A	N/A
PHROG	UHGV-0111259_59	phrog_64	181.0	0	portal protein	head and packaging
UniRef90	UHGV-0111259_59	UniRef90_A0A373NRD8	996.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0111259_59	1298920.KI911353_gene2663	573.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0111259_59	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0111259_59	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0111259_60	phrog_36	68.7	1.1e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0111259_60	UniRef90_A0A373NRA4	261.0	0	N/A	N/A
eggNOG-mapper	UHGV-0111259_60	97138.C820_00221	71.2	0.0000000000000834	sigma factor activity	N/A
Pfam	UHGV-0111259_60	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0111259_60	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0111259_60	PF07374,MF_00674,NF008895,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0111259_61	phrog_38	150.4	1.26117e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0111259_61	UniRef90_A0A7X2P7N6	463.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0111259_61	476272.RUMHYD_01940	878.0	0	TIGRFAM Phage	N/A
COG	UHGV-0111259_61	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0111259_61	PF17289,PF04466,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A