UHGV-0111360 (vOTU-163905)

Viral Genome: UHGV-0111360

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0111360
vOTU ID	vOTU-163905
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_244445
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.25 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.926
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.94
Jumbo phage	No

Genome content
Genome length (bp)	23,997
GC content	48.57%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	40
CDS density	91%
Average CDS length (bps)	546.08
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 53.25)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0111360_1	469610.HMPREF0189_02145	76.6	1.3e-17	N/A	N/A
COG	UHGV-0111360_1	COG3743	N/A	N/A	Predicted 5' DNA nuclease, flap endonuclease-1-like, helix-3-turn-helix (H3TH) domain	N/A
KOfam	UHGV-0111360_2	K00016	244.1	0	LDH, ldh; L-lactate dehydrogenase [EC:1.1.1.27]	N/A
UniRef90	UHGV-0111360_2	UniRef90_F3QNV0	602.0	0	L-2-hydroxyisocaproate dehydrogenase	N/A
eggNOG-mapper	UHGV-0111360_2	469610.HMPREF0189_02146	602.0	0	lactate/malate dehydrogenase, NAD binding domain	N/A
Pfam	UHGV-0111360_2	PF00056	N/A	N/A	lactate/malate dehydrogenase, NAD binding domain	Ldh_1_N
Pfam	UHGV-0111360_2	PF02866	N/A	N/A	lactate/malate dehydrogenase, alpha/beta C-terminal domain	Ldh_1_C
COG	UHGV-0111360_2	COG0039	N/A	N/A	Malate/lactate dehydrogenase	N/A
structural_annotation	UHGV-0111360_2	PF00056,PF02866,MF_00488,NF000824,COG0039	N/A	N/A	N/A	N/A
PHROG	UHGV-0111360_3	phrog_2158	175.0	0	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0111360_3	UniRef90_A0A0K1XGK3	216.0	0	Abortive phage resistance protein	N/A
eggNOG-mapper	UHGV-0111360_3	887898.HMPREF0551_2494	199.0	0	Abi-like protein	N/A
PADLOC	UHGV-0111360_3	AbiD	206.9	0	AbiD	Abi
Pfam	UHGV-0111360_3	PF07751	N/A	N/A	Abi-like protein	Abi_2
COG	UHGV-0111360_3	COG4823	N/A	N/A	Abortive infection bacteriophage resistance protein	N/A
structural_annotation	UHGV-0111360_3	PF07751,COG4823	N/A	N/A	N/A	N/A
KOfam	UHGV-0111360_4	K14059	139.0	6.79994e-41	int; integrase	N/A
PHROG	UHGV-0111360_4	phrog_1	172.1	0	integrase	integration and excision
UniRef90	UHGV-0111360_4	UniRef90_UPI0012BCE2FB	418.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0111360_4	762966.HMPREF9439_00979	363.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0111360_4	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0111360_4	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0111360_4	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0111360_5	469610.HMPREF0189_01148	55.8	0.00000000727	N/A	N/A
PHROG	UHGV-0111360_6	phrog_236	54.4	0.0000000000000032	nucleotide kinase	other
eggNOG-mapper	UHGV-0111360_6	742823.HMPREF9465_01256	60.8	0.00000000135	N/A	N/A
Pfam	UHGV-0111360_6	PF11753	N/A	N/A	N/A	DUF3310
KOfam	UHGV-0111360_7	K03111	157.4	0	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0111360_7	phrog_44	128.0	8.2e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0111360_7	UniRef90_A0A3D4G7A5	216.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0111360_7	243231.GSU3117	127.0	2.29e-36	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0111360_7	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0111360_7	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0111360_7	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0111360_7	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0111360_7	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0111360_14	K22300	60.4	4.4e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0111360_14	phrog_2967	51.2	0.000000000000018	transcriptional regulator	transcription regulation
UniRef90	UHGV-0111360_14	UniRef90_A0A3D3SJK5	100.0	3.51e-25	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0111360_14	748280.NH8B_1955	54.3	0.000000194	Transcriptional regulator	N/A
Pfam	UHGV-0111360_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0111360_14	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0111360_14	PF12844,MF_00535,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0111360_15	UniRef90_UPI001C236155	66.2	0.000000000000872	Cro/Cl family transcriptional regulator	N/A
structural_annotation	UHGV-0111360_15	PF14549,NF007282,COG4197	N/A	N/A	N/A	N/A
KOfam	UHGV-0111360_20	K17080	63.6	2.7e-18	PHB1; prohibitin 1	N/A
PHROG	UHGV-0111360_20	phrog_200	255.7	0	lipoprotein	other
UniRef90	UHGV-0111360_20	UniRef90_A0A6L6YN91	434.0	0	SPFH/Band 7/PHB domain protein	N/A
eggNOG-mapper	UHGV-0111360_20	1484158.PSNIH1_18910	298.0	0	SPFH domain / Band 7 family	N/A
Pfam	UHGV-0111360_20	PF01145	N/A	N/A	SPFH domain / Band 7 family	Band_7
COG	UHGV-0111360_20	COG0330	N/A	N/A	Regulator of protease activity HflC, stomatin/prohibitin superfamily	N/A
structural_annotation	UHGV-0111360_20	PF01145,MF_01562,TIGR01932,COG0330	N/A	N/A	N/A	N/A
KOfam	UHGV-0111360_21	K06919	70.5	1.8e-20	K06919; putative DNA primase/helicase	N/A
PHROG	UHGV-0111360_21	phrog_2249	313.3	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0111360_21	UniRef90_A0A6L6YKY2	1011.0	0	N/A	N/A
eggNOG-mapper	UHGV-0111360_21	765910.MARPU_09580	303.0	0	Phage plasmid primase P4 family	N/A
Pfam	UHGV-0111360_21	PF13362	N/A	N/A	Toprim domain	Toprim_3
Pfam	UHGV-0111360_21	PF19263	N/A	N/A	N/A	DUF5906
COG	UHGV-0111360_21	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-0111360_21	PF05272,PF03288,MF_04000,NF011296,TIGR00646,COG4643,COG3378	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0111360_23	PF08281,MF_00245,NF007225,COG1595	N/A	N/A	N/A	N/A
KOfam	UHGV-0111360_27	K07451	55.3	0.0000000000000013	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0111360_27	phrog_144	113.5	1.5e-33	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0111360_27	UniRef90_UPI0005864BBB	130.0	2.88e-36	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0111360_27	646529.Desaci_1289	110.0	1.22e-29	HNH endonuclease	N/A
Pfam	UHGV-0111360_27	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0111360_27	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0111360_27	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0111360_28	phrog_1305	70.3	1.5e-20	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0111360_28	UniRef90_A0A6L6YE04	135.0	6.55e-36	N/A	N/A
eggNOG-mapper	UHGV-0111360_28	469610.HMPREF0189_01099	108.0	8.9e-27	N/A	N/A
Pfam	UHGV-0111360_28	PF13643	N/A	N/A	N/A	DUF4145
structural_annotation	UHGV-0111360_28	PF13643,COG1895	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0111360_30	380358.XALC_2399	55.1	0.0000000128	Phage terminase, small subunit	N/A
COG	UHGV-0111360_30	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
Pfam	UHGV-0111360_31	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
PHROG	UHGV-0111360_32	phrog_9	436.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0111360_32	UniRef90_A0A3D4G989	1127.0	0	Terminase large subunit (Fragment)	N/A
eggNOG-mapper	UHGV-0111360_32	1485544.JQKP01000008_gene1675	605.0	0	Terminase	N/A
Pfam	UHGV-0111360_32	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0111360_32	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0111360_32	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0111360_32	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0111360_33	phrog_12	297.1	0	portal protein	head and packaging
UniRef90	UHGV-0111360_33	UniRef90_A0A3D4G7C4	792.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0111360_33	742821.HMPREF9464_01833	330.0	0	Phage portal protein	N/A
Pfam	UHGV-0111360_33	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0111360_33	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0111360_33	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0111360_33	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0111360_34	K06904	114.7	1.2e-33	N/A	N/A
PHROG	UHGV-0111360_34	phrog_80	100.6	2.4e-29	head maturation protease	head and packaging
UniRef90	UHGV-0111360_34	UniRef90_A0A3D4G7E8	424.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0111360_34	742821.HMPREF9464_01832	132.0	9.89e-36	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0111360_34	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0111360_34	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0111360_34	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0111360_34	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0111360_35	phrog_10	187.9	0	major head protein	head and packaging
UniRef90	UHGV-0111360_35	UniRef90_A0A3D4G7T3	656.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0111360_35	742821.HMPREF9464_01831	224.0	0	Phage capsid family	N/A
Pfam	UHGV-0111360_35	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0111360_35	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0111360_35	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0111360_35	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0111360_36	phrog_40	45.4	0.00000000000097	head-tail adaptor Ad1	connector
eggNOG-mapper	UHGV-0111360_36	742821.HMPREF9464_01830	53.9	0.0000000847	Phage gp6-like head-tail connector protein	N/A
NCBIFam	UHGV-0111360_36	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0111360_36	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0111360_37	phrog_25	55.0	0.0000000000000016	head closure Hc1	connector
UniRef90	UHGV-0111360_37	UniRef90_A0A7Y1FS28	87.0	9.46e-20	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0111360_37	742821.HMPREF9464_01829	105.0	7.58e-28	Phage head-tail joining protein	N/A
Pfam	UHGV-0111360_37	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0111360_37	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0111360_37	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0111360_38	phrog_879	92.5	4.8e-27	tail completion or Neck1 protein	connector
eggNOG-mapper	UHGV-0111360_38	160488.PP_3873	58.2	0.0000000201	N/A	N/A
structural_annotation	UHGV-0111360_38	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0111360_39	phrog_209	89.3	4.1e-26	portal protein	head and packaging
UniRef90	UHGV-0111360_39	UniRef90_A0A383FEA7	89.0	8.04e-19	N/A	N/A
eggNOG-mapper	UHGV-0111360_39	103807.Q8W624_9CAUD	87.0	7.38e-19	N/A	N/A
structural_annotation	UHGV-0111360_39	PF09646	N/A	N/A	N/A	N/A
PHROG	UHGV-0111360_40	phrog_165	169.1	0	tail sheath	tail
UniRef90	UHGV-0111360_40	UniRef90_A0A739PZJ8	118.0	1.41e-29	Phage tail protein (Fragment)	N/A
eggNOG-mapper	UHGV-0111360_40	742821.HMPREF9464_01827	134.0	4.83e-35	tail sheath	N/A
COG	UHGV-0111360_40	COG4386	N/A	N/A	Mu-like prophage tail sheath protein gpL	N/A