UHGV-0111417 (vOTU-146854)

Viral Genome: UHGV-0111417

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0111417
vOTU ID	vOTU-146854
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_264276
Associated BioSample	SAMEA3879558
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.87 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9628
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.18
Jumbo phage	No

Genome content
Genome length (bp)	20,575
GC content	41.47%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	26
CDS density	92%
Average CDS length (bps)	724.85
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 56.87)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0111417_1	phrog_422	51.1	0.000000000000024	major head protein	head and packaging
eggNOG-mapper	UHGV-0111417_1	693746.OBV_18090	87.8	4.21e-20	N/A	N/A
PHROG	UHGV-0111417_2	phrog_541	77.3	1.9e-22	head-tail adaptor	connector
eggNOG-mapper	UHGV-0111417_2	1449050.JNLE01000003_gene3888	82.4	1.16e-18	N/A	N/A
PHROG	UHGV-0111417_3	phrog_3366	64.6	1.2e-18	N/A	unknown function
Pfam	UHGV-0111417_3	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0111417_3	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0111417_4	phrog_556	118.9	1.3e-35	minor head protein	head and packaging
UniRef90	UHGV-0111417_4	UniRef90_UPI00189BC4F9	358.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0111417_4	1449050.JNLE01000003_gene3886	150.0	1.82169e-44	N/A	N/A
Pfam	UHGV-0111417_4	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0111417_4	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0111417_5	phrog_3266	94.3	1.1e-27	tail completion	connector
eggNOG-mapper	UHGV-0111417_5	1449050.JNLE01000003_gene3885	140.0	5.30994e-41	N/A	N/A
structural_annotation	UHGV-0111417_5	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0111417_6	phrog_3099	145.1	3.29305e-43	N/A	unknown function
eggNOG-mapper	UHGV-0111417_6	1160721.RBI_II00532	209.0	0	N/A	N/A
structural_annotation	UHGV-0111417_6	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0111417_7	phrog_11299	103.4	2.2e-30	N/A	unknown function
eggNOG-mapper	UHGV-0111417_7	1449050.JNLE01000003_gene3883	69.3	0.000000000000543	N/A	N/A
structural_annotation	UHGV-0111417_7	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0111417_8	phrog_706	127.4	1.1e-37	N/A	unknown function
UniRef90	UHGV-0111417_8	UniRef90_UPI001B3C82AE	255.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0111417_8	1160721.RBI_II00530	192.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0111417_8	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0111417_8	PF06854	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0111417_10	1408311.JNJM01000003_gene2963	66.2	0.00000000125	N/A	N/A
structural_annotation	UHGV-0111417_10	PF07718,PF02883,NF007398,COG3121	N/A	N/A	N/A	N/A
KOfam	UHGV-0111417_11	K20282	40.9	0.0000000000013	GCC2; GRIP and coiled-coil domain-containing protein 2	N/A
PHROG	UHGV-0111417_11	phrog_1535	484.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0111417_11	UniRef90_A0A2N0ULX3	1129.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0111417_11	33035.JPJF01000093_gene2243	361.0	0	phage tail tape measure protein	N/A
COG	UHGV-0111417_11	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0111417_11	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0111417_12	phrog_1194	62.4	7.4e-18	N/A	unknown function
eggNOG-mapper	UHGV-0111417_12	397290.C810_05238	95.5	2.55e-23	N/A	N/A
Pfam	UHGV-0111417_12	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0111417_12	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0111417_13	phrog_18190	72.8	1e-30	N/A	unknown function
eggNOG-mapper	UHGV-0111417_13	483218.BACPEC_01143	76.3	0.00000000000559	N/A	N/A
structural_annotation	UHGV-0111417_13	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0111417_14	PF01664	N/A	N/A	N/A	N/A
KOfam	UHGV-0111417_16	K01447	40.4	0.000000000056	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0111417_16	phrog_833	72.2	1e-20	endolysin	lysis
eggNOG-mapper	UHGV-0111417_16	1226322.HMPREF1545_00070	84.0	9.62e-19	Ami_2	N/A
Pfam	UHGV-0111417_16	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0111417_16	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
PHROG	UHGV-0111417_17	phrog_22474	40.9	0.0000000000088	endolysin	lysis
eggNOG-mapper	UHGV-0111417_17	1232453.BAIF02000059_gene1616	95.5	2.05e-22	Ami_2	N/A
COG	UHGV-0111417_17	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
PHROG	UHGV-0111417_18	phrog_199	74.5	1.3e-21	holin	lysis
UniRef90	UHGV-0111417_18	UniRef90_UPI00164BD6C2	274.0	0	phage holin family protein	N/A
eggNOG-mapper	UHGV-0111417_18	1160721.RBI_I01565	148.0	6.86636e-44	Bacteriophage holin family	N/A
Pfam	UHGV-0111417_18	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0111417_18	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0111417_18	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0111417_18	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0111417_19	K00986	218.6	0	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0111417_19	phrog_2825	228.3	0	polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0111417_19	UniRef90_R6NID4	1142.0	0	Putative RNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-0111417_19	931626.Awo_c01460	627.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0111417_19	retron_type_I_C2_RT_typeIC2	823.1	0	single gene	Retron
Pfam	UHGV-0111417_19	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
NCBIFam	UHGV-0111417_19	NF038237.1	N/A	N/A	retron Ec67 family RNA-directed DNA polymerase/endonuclease	N/A
COG	UHGV-0111417_19	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
KOfam	UHGV-0111417_20	K14059	338.5	0	int; integrase	N/A
PHROG	UHGV-0111417_20	phrog_1	242.8	0	integrase	integration and excision
UniRef90	UHGV-0111417_20	UniRef90_D4JUW3	867.0	0	Site-specific recombinase XerD	N/A
eggNOG-mapper	UHGV-0111417_20	742738.HMPREF9460_03536	576.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0111417_20	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0111417_20	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0111417_20	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0111417_20	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0111417_21	K14059	314.6	0	int; integrase	N/A
PHROG	UHGV-0111417_21	phrog_1	235.9	0	integrase	integration and excision
UniRef90	UHGV-0111417_21	UniRef90_D4JUW2	785.0	0	Site-specific recombinase XerD	N/A
eggNOG-mapper	UHGV-0111417_21	1226322.HMPREF1545_01361	518.0	0	N/A	N/A
Pfam	UHGV-0111417_21	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0111417_21	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0111417_21	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0111417_21	PF00589,PF14659,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0111417_22	UniRef90_A0A6N3UYX7	236.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0111417_22	693746.OBV_30670	161.0	0	Helix-turn-helix domain	N/A
Pfam	UHGV-0111417_22	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
structural_annotation	UHGV-0111417_22	PF03428,MF_01909,NF041141,COG4738	N/A	N/A	N/A	N/A
UniRef90	UHGV-0111417_23	UniRef90_D4JUW1	138.0	1.95005e-41	DNA binding domain, excisionase family	N/A
eggNOG-mapper	UHGV-0111417_23	693746.OBV_30680	110.0	3.18e-31	Helix-turn-helix domain	N/A
Pfam	UHGV-0111417_23	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0111417_23	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-0111417_23	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-0111417_23	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0111417_24	877414.ATWA01000033_gene1325	71.6	0.00000000000000346	N/A	N/A
Pfam	UHGV-0111417_24	PF20648	N/A	N/A	N/A	DUF6809
structural_annotation	UHGV-0111417_24	PF20648	N/A	N/A	N/A	N/A
UniRef90	UHGV-0111417_26	UniRef90_A0A373XNS0	479.0	0	N/A	N/A
eggNOG-mapper	UHGV-0111417_26	411471.SUBVAR_05747	429.0	0	N/A	N/A
PADLOC	UHGV-0111417_26	drt-cluster579	174.5	0	DRT	DRT
Pfam	UHGV-0111417_26	PF08902	N/A	N/A	N/A	DUF1848
COG	UHGV-0111417_26	COG1533	N/A	N/A	DNA repair photolyase	N/A
structural_annotation	UHGV-0111417_26	PF08902,MF_01873,NF033719,COG0820	N/A	N/A	N/A	N/A