UHGV-0111808 (vOTU-038845)

Viral Genome: UHGV-0111808

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0111808
vOTU ID	vOTU-038845
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_248859
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.89 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9778
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.38
Jumbo phage	No

Genome content
Genome length (bp)	36,890
GC content	40.02%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	49
CDS density	92%
Average CDS length (bps)	689.45
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 65.89)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0111808_1	K01447	90.2	3.3e-26	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0111808_1	phrog_35436	168.6	0	amidase	lysis
UniRef90	UHGV-0111808_1	UniRef90_UPI001D016E56	270.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0111808_1	1280698.AUJS01000007_gene1059	262.0	0	Ami_2	N/A
Pfam	UHGV-0111808_1	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0111808_1	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0111808_1	PF01510,PF01471,MF_04111,NF008758,COG5632,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0111808_2	phrog_1129	89.2	2.3e-26	holin	lysis
UniRef90	UHGV-0111808_2	UniRef90_UPI001D072DD9	148.0	1.12104e-44	phage holin family protein	N/A
eggNOG-mapper	UHGV-0111808_2	411460.RUMTOR_01325	134.0	7.85e-40	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0111808_2	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0111808_2	PF16079	N/A	N/A	N/A	N/A
PHROG	UHGV-0111808_3	phrog_4105	87.5	1.1e-25	N/A	unknown function
eggNOG-mapper	UHGV-0111808_3	411459.RUMOBE_00911	167.0	0	N/A	N/A
eggNOG-mapper	UHGV-0111808_4	457412.RSAG_04673	54.7	0.00000000149	N/A	N/A
PHROG	UHGV-0111808_5	phrog_20274	139.4	1.70006e-41	N/A	unknown function
UniRef90	UHGV-0111808_5	UniRef90_A0A174K025	284.0	0	Predicted membrane protein	N/A
eggNOG-mapper	UHGV-0111808_5	1298920.KI911353_gene4880	147.0	1.03696e-43	N/A	N/A
Pfam	UHGV-0111808_5	PF06541	N/A	N/A	Putative ABC-transporter type IV	ABC_trans_CmpB
COG	UHGV-0111808_5	COG4905	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0111808_5	PF06541,COG4905	N/A	N/A	N/A	N/A
PHROG	UHGV-0111808_6	phrog_1348	49.0	0.00000000000012	tail fiber protein	tail
UniRef90	UHGV-0111808_6	UniRef90_UPI001C0F60E0	353.0	0	acyl carrier protein	N/A
eggNOG-mapper	UHGV-0111808_6	608534.GCWU000341_02274	132.0	2.07e-35	N/A	N/A
structural_annotation	UHGV-0111808_6	PF14301	N/A	N/A	N/A	N/A
KOfam	UHGV-0111808_7	K00986	69.6	4.8e-20	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0111808_7	phrog_1423	128.1	7.9e-38	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0111808_7	UniRef90_D4J8M1	811.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
eggNOG-mapper	UHGV-0111808_7	657322.FPR_27160	380.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
COG	UHGV-0111808_7	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0111808_7	PF00078,MF_04065,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0111808_8	phrog_17147	352.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0111808_8	657322.FPR_27150	560.0	0	N/A	N/A
PHROG	UHGV-0111808_10	phrog_11105	41.4	0.000000000017	N/A	unknown function
PHROG	UHGV-0111808_12	phrog_9886	405.8	0	N/A	unknown function
UniRef90	UHGV-0111808_12	UniRef90_UPI0002D787EE	1874.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0111808_12	1235792.C808_03048	390.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0111808_12	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0111808_12	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0111808_12	PF14594,PF04862,PF20843,TIGR01665,NF033675,COG4926,COG4266	N/A	N/A	N/A	N/A
PHROG	UHGV-0111808_13	phrog_33	67.9	2.5e-19	distal tail protein Dit	tail
UniRef90	UHGV-0111808_13	UniRef90_D4J8M6	468.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0111808_13	1235792.C808_05349	152.0	1.04957e-42	N/A	N/A
structural_annotation	UHGV-0111808_13	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0111808_14	phrog_19074	444.6	0	N/A	unknown function
UniRef90	UHGV-0111808_14	UniRef90_A0A391P3M6	983.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0111808_14	1235792.C808_05377	456.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0111808_14	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
Pfam	UHGV-0111808_14	PF04691	N/A	N/A	Apolipoprotein C-I (ApoC-1)	ApoC-I
NCBIFam	UHGV-0111808_14	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0111808_14	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0111808_14	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0111808_15	phrog_706	172.8	0	N/A	unknown function
UniRef90	UHGV-0111808_15	UniRef90_D4J8M9	340.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0111808_15	931276.Cspa_c07530	219.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0111808_15	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0111808_15	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0111808_16	phrog_4450	120.8	7e-36	N/A	unknown function
UniRef90	UHGV-0111808_16	UniRef90_A0A416RQL6	189.0	0	AP endonuclease	N/A
eggNOG-mapper	UHGV-0111808_16	931276.Cspa_c07520	76.3	3.5e-16	N/A	N/A
Pfam	UHGV-0111808_16	PF20378	N/A	N/A	N/A	DUF6673
structural_annotation	UHGV-0111808_16	PF20378	N/A	N/A	N/A	N/A
PHROG	UHGV-0111808_17	phrog_3099	154.7	0	N/A	unknown function
UniRef90	UHGV-0111808_17	UniRef90_A0A0A8WE72	143.0	2.57e-39	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0111808_17	903814.ELI_3202	135.0	4.93e-38	N/A	N/A
structural_annotation	UHGV-0111808_17	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0111808_18	phrog_3266	137.3	5.79997e-41	tail completion	connector
UniRef90	UHGV-0111808_18	UniRef90_UPI001570657D	126.0	1.42e-34	chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-0111808_18	1321782.HMPREF1986_02272	189.0	0	N/A	N/A
structural_annotation	UHGV-0111808_18	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0111808_19	phrog_556	118.5	3e-35	minor head protein	head and packaging
UniRef90	UHGV-0111808_19	UniRef90_UPI001D074B8B	174.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0111808_19	1321782.HMPREF1986_02271	148.0	1.4013e-44	N/A	N/A
structural_annotation	UHGV-0111808_19	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0111808_20	phrog_3366	99.3	3.2e-29	N/A	unknown function
eggNOG-mapper	UHGV-0111808_20	632245.CLP_1651	55.1	0.000000191	N/A	N/A
Pfam	UHGV-0111808_20	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0111808_20	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0111808_21	phrog_541	84.7	9.1e-25	head-tail adaptor	connector
eggNOG-mapper	UHGV-0111808_21	411462.DORLON_00785	82.8	1.8e-18	N/A	N/A
PHROG	UHGV-0111808_23	phrog_10	166.8	0	major head protein	head and packaging
UniRef90	UHGV-0111808_23	UniRef90_A0A391PHY8	587.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0111808_23	411461.DORFOR_00744	565.0	0	COG NOG20168 non supervised orthologous group	N/A
Pfam	UHGV-0111808_23	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0111808_23	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0111808_23	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0111808_23	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0111808_24	phrog_2303	136.2	2.69999e-40	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0111808_24	411461.DORFOR_00745	274.0	0	N/A	N/A
structural_annotation	UHGV-0111808_24	PF10788,MF_02110	N/A	N/A	N/A	N/A
KOfam	UHGV-0111808_25	K07584	58.5	1.4e-16	N/A	N/A
PHROG	UHGV-0111808_25	phrog_4478	82.8	3.1e-24	peptidase	other
UniRef90	UHGV-0111808_25	UniRef90_UPI001D015AF1	146.0	6.30584e-44	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-0111808_25	411461.DORFOR_00746	140.0	2.92031e-42	Pfam:Peptidase_C108	N/A
Pfam	UHGV-0111808_25	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0111808_25	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0111808_25	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0111808_26	411461.DORFOR_00747	127.0	3.49e-37	N/A	N/A
PHROG	UHGV-0111808_27	phrog_581	322.8	0	minor head protein	head and packaging
UniRef90	UHGV-0111808_27	UniRef90_A0A3E5EL65	868.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0111808_27	411461.DORFOR_00748	834.0	0	N/A	N/A
Pfam	UHGV-0111808_27	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0111808_27	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0111808_27	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0111808_28	phrog_533	415.9	0	portal protein	head and packaging
UniRef90	UHGV-0111808_28	UniRef90_A0A173TXV5	806.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0111808_28	411461.DORFOR_00749	694.0	0	COG NOG25118 non supervised orthologous group	N/A
Pfam	UHGV-0111808_28	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0111808_28	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0111808_29	K06909	206.6	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0111808_29	phrog_2	112.8	5.5e-33	terminase large subunit	head and packaging
UniRef90	UHGV-0111808_29	UniRef90_A0A373SU52	776.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0111808_29	411461.DORFOR_00750	751.0	0	COG COG1783 Phage terminase large subunit	N/A
Pfam	UHGV-0111808_29	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0111808_29	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0111808_29	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0111808_29	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0111808_29	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0111808_30	phrog_509	281.2	0	terminase small subunit	head and packaging
UniRef90	UHGV-0111808_30	UniRef90_UPI001D08C3AD	334.0	0	phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0111808_30	1449050.JNLE01000003_gene3896	244.0	0	DNA packaging	N/A
Pfam	UHGV-0111808_30	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
NCBIFam	UHGV-0111808_30	NF040601.1	N/A	N/A	phage terminase small subunit	N/A
COG	UHGV-0111808_30	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0111808_30	PF10668,PF01920,NF040601,COG5484	N/A	N/A	N/A	N/A
PHROG	UHGV-0111808_31	phrog_36	68.5	1.3e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0111808_31	UniRef90_UPI001571211B	92.8	2.17e-21	N/A	N/A
eggNOG-mapper	UHGV-0111808_31	665950.HMPREF1025_02539	94.4	7.18e-23	sigma factor activity	N/A
Pfam	UHGV-0111808_31	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0111808_31	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0111808_31	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0111808_32	PF18359,COG4466	N/A	N/A	N/A	N/A
PHROG	UHGV-0111808_34	phrog_2514	130.8	1e-38	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0111808_34	UniRef90_UPI000E3E3572	99.8	2.14e-22	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0111808_34	642492.Clole_1479	152.0	5.88545e-44	DnaD domain protein	N/A
COG	UHGV-0111808_34	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-0111808_35	phrog_8492	54.2	0.0000000000000018	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0111808_35	UniRef90_UPI0001F01BA4	247.0	0	N/A	N/A
eggNOG-mapper	UHGV-0111808_35	33035.JPJF01000135_gene5082	238.0	0	N/A	N/A
Pfam	UHGV-0111808_35	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0111808_35	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0111808_39	phrog_6058	55.0	7e-16	N/A	unknown function
UniRef90	UHGV-0111808_39	UniRef90_A0A374E7W1	201.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0111808_39	742740.HMPREF9474_02381	144.0	1.5106e-42	N/A	N/A
Pfam	UHGV-0111808_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0111808_39	PF01381,PF12728,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0111808_40	phrog_463	223.0	0	anti-repressor	transcription regulation
UniRef90	UHGV-0111808_40	UniRef90_A0A373ILI2	389.0	0	Phage repressor protein	N/A
eggNOG-mapper	UHGV-0111808_40	411490.ANACAC_00813	268.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0111808_40	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0111808_40	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0111808_40	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0111808_40	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
KOfam	UHGV-0111808_41	K04763	219.7	0	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0111808_41	phrog_1	175.1	0	integrase	integration and excision
UniRef90	UHGV-0111808_41	UniRef90_UPI00156E0BE9	322.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0111808_41	565653.EGBG_01953	195.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0111808_41	PF13495	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
Pfam	UHGV-0111808_41	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0111808_41	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
KOfam	UHGV-0111808_44	K22300	66.0	9.3e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0111808_44	phrog_8	59.5	4.7e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0111808_44	UniRef90_A0A1C6HZ25	182.0	0	Antitoxin PezA	N/A
eggNOG-mapper	UHGV-0111808_44	445972.ANACOL_03315	142.0	2.68068e-42	N/A	N/A
Pfam	UHGV-0111808_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0111808_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0111808_44	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0111808_45	UniRef90_A0A174LY22	122.0	2.82e-34	Antitoxin PezA	N/A
eggNOG-mapper	UHGV-0111808_45	445972.ANACOL_03315	121.0	1.35e-34	N/A	N/A
COG	UHGV-0111808_45	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0111808_47	K22300	41.9	0.0000000000083	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
UniRef90	UHGV-0111808_47	UniRef90_A0A1E3UPM2	103.0	1.03e-25	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0111808_47	1235792.C808_00647	91.7	9.06e-22	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0111808_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0111808_47	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-0111808_48	1203606.HMPREF1526_01315	100.0	5.67e-24	N/A	N/A
KOfam	UHGV-0111808_49	K14059	192.5	0	int; integrase	N/A
PHROG	UHGV-0111808_49	phrog_1	186.7	0	integrase	integration and excision
UniRef90	UHGV-0111808_49	UniRef90_A0A564WTT7	739.0	0	Site-specific tyrosine recombinase XerC	N/A
eggNOG-mapper	UHGV-0111808_49	411902.CLOBOL_02558	439.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0111808_49	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0111808_49	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0111808_49	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0111808_49	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0111808_49	PF00589,PF14659,PF14657,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A