UHGV-0111926 (vOTU-096616)

Viral Genome: UHGV-0111926

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0111926
vOTU ID	vOTU-096616
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_252635
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.22 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9805
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.28
Jumbo phage	No

Genome content
Genome length (bp)	39,305
GC content	41.71%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	62
CDS density	90%
Average CDS length (bps)	568.74
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 87.22)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0111926_1	phrog_8841	110.3	1.9e-32	DNA primase/helicase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0111926_1	476272.RUMHYD_01742	171.0	0	N/A	N/A
Pfam	UHGV-0111926_1	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0111926_1	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0111926_2	NF010187	N/A	N/A	N/A	N/A
PHROG	UHGV-0111926_3	phrog_3502	43.2	0.0000000000079	N/A	unknown function
UniRef90	UHGV-0111926_3	UniRef90_A0A412EKY9	93.6	3.62e-23	Winged helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0111926_3	525256.HMPREF0091_10731	49.7	0.00000726	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	N/A
Pfam	UHGV-0111926_3	PF01726	N/A	N/A	LexA DNA binding domain	LexA_DNA_bind
COG	UHGV-0111926_3	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0111926_3	PF01726,MF_00732,TIGR00738,COG0640	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0111926_4	PF04936	N/A	N/A	N/A	N/A
KOfam	UHGV-0111926_7	K19779	53.1	0.0000000000000054	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
PHROG	UHGV-0111926_7	phrog_599	58.0	2.6e-16	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0111926_7	UniRef90_A0A317UED7	112.0	2.63e-31	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-0111926_7	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0111926_7	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0111926_7	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
PHROG	UHGV-0111926_8	phrog_4601	45.8	0.0000000000011	N/A	unknown function
PHROG	UHGV-0111926_9	phrog_924	42.5	0.000000000015	N/A	unknown function
UniRef90	UHGV-0111926_9	UniRef90_A0A317UCE7	233.0	0	N/A	N/A
Pfam	UHGV-0111926_9	PF04448	N/A	N/A	N/A	DUF551
eggNOG-mapper	UHGV-0111926_10	665950.HMPREF1025_01402	100.0	9.91e-28	N/A	N/A
eggNOG-mapper	UHGV-0111926_12	476272.RUMHYD_01751	48.1	0.00000901	N/A	N/A
AcrCatalog	UHGV-0111926_12	cluster_11670	43.5	0.0000000219	NA	N/A
UniRef90	UHGV-0111926_14	UniRef90_UPI001C00A328	58.5	0.00000000888	N/A	N/A
PHROG	UHGV-0111926_16	phrog_3377	172.2	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0111926_16	1356854.N007_05270	135.0	1.88e-37	N/A	N/A
structural_annotation	UHGV-0111926_16	PF18340	N/A	N/A	N/A	N/A
PHROG	UHGV-0111926_17	phrog_10678	44.6	0.0000000000031	N/A	unknown function
PHROG	UHGV-0111926_18	phrog_309	136.4	8.00001e-41	terminase small subunit	head and packaging
UniRef90	UHGV-0111926_18	UniRef90_A0A8J6P944	151.0	4.2039e-45	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0111926_18	1121091.AUMP01000003_gene2580	121.0	1.2e-33	transposase activity	N/A
Pfam	UHGV-0111926_18	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
COG	UHGV-0111926_18	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0111926_18	PF07141	N/A	N/A	N/A	N/A
PHROG	UHGV-0111926_19	phrog_314	68.0	2.3e-19	homing endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0111926_19	UniRef90_A0A075KJD6	107.0	4.71e-25	Putative truncated GIY-YIG endonuclease	N/A
eggNOG-mapper	UHGV-0111926_19	1399942.U3PCR9_9CAUD	99.0	9.85e-23	NUMOD3 motif (2 copies)	N/A
Pfam	UHGV-0111926_19	PF07460	N/A	N/A	NUMOD3 motif	NUMOD3
structural_annotation	UHGV-0111926_19	PF19835,PF07460,TIGR01453	N/A	N/A	N/A	N/A
KOfam	UHGV-0111926_20	K06909	375.3	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0111926_20	phrog_3717	153.8	1.4013e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0111926_20	UniRef90_A0A6L8SYJ6	594.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0111926_20	33035.JPJF01000106_gene3136	505.0	0	Terminase small subunit	N/A
Pfam	UHGV-0111926_20	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0111926_20	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0111926_20	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0111926_20	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0111926_20	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0111926_22	phrog_533	276.1	0	portal protein	head and packaging
UniRef90	UHGV-0111926_22	UniRef90_A0A1C6CDM8	690.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0111926_22	33035.JPJF01000106_gene3135	524.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0111926_22	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0111926_23	phrog_581	277.9	0	minor head protein	head and packaging
UniRef90	UHGV-0111926_23	UniRef90_A0A412EKN3	803.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0111926_23	33035.JPJF01000106_gene3134	351.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0111926_23	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0111926_23	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0111926_23	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0111926_24	phrog_3754	113.0	2.2e-33	N/A	unknown function
eggNOG-mapper	UHGV-0111926_24	476272.RUMHYD_01764	181.0	0	N/A	N/A
UniRef90	UHGV-0111926_25	UniRef90_A0A395X7A4	184.0	0	CTP synthase	N/A
eggNOG-mapper	UHGV-0111926_25	476272.RUMHYD_01766	122.0	3.74e-35	N/A	N/A
AcrCatalog	UHGV-0111926_27	cluster_37488	72.4	8e-20	NA	N/A
eggNOG-mapper	UHGV-0111926_28	1410625.JHWK01000002_gene45	69.3	0.000000000000818	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0111926_28	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0111926_28	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0111926_28	PF01381,NF040522,COG2944	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0111926_29	411490.ANACAC_00698	64.7	0.0000000000248	N/A	N/A
AcrCatalog	UHGV-0111926_29	cluster_81672	284.0	0	NA	N/A
PHROG	UHGV-0111926_30	phrog_21718	129.1	2.1e-38	N/A	unknown function
eggNOG-mapper	UHGV-0111926_30	476272.RUMHYD_01768	125.0	1.48e-34	N/A	N/A
PHROG	UHGV-0111926_31	phrog_22984	97.2	9.9e-29	N/A	unknown function
PHROG	UHGV-0111926_32	phrog_16490	191.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0111926_32	397290.C810_01328	189.0	0	N/A	N/A
PHROG	UHGV-0111926_33	phrog_20016	206.7	0	N/A	unknown function
UniRef90	UHGV-0111926_33	UniRef90_A0A285PT46	169.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0111926_33	397290.C810_05214	190.0	0	N/A	N/A
structural_annotation	UHGV-0111926_33	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0111926_34	phrog_28802	220.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0111926_34	476272.RUMHYD_01772	201.0	0	N/A	N/A
PHROG	UHGV-0111926_35	phrog_194	65.6	1.1e-18	head scaffolding protein	head and packaging
UniRef90	UHGV-0111926_35	UniRef90_UPI001D14C9C8	188.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0111926_35	476272.RUMHYD_01775	192.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0111926_35	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0111926_36	phrog_544	164.4	0	major head protein	head and packaging
UniRef90	UHGV-0111926_36	UniRef90_A0A395X7A1	712.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0111926_36	1232453.BAIF02000011_gene3359	382.0	0	N/A	N/A
Pfam	UHGV-0111926_36	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0111926_36	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0111926_37	phrog_541	95.6	3.9e-28	head-tail adaptor	connector
eggNOG-mapper	UHGV-0111926_37	476272.RUMHYD_01778	111.0	6.84e-29	N/A	N/A
PHROG	UHGV-0111926_38	phrog_1233	92.3	5.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-0111926_38	476272.RUMHYD_01960	104.0	3.15e-27	N/A	N/A
KOfam	UHGV-0111926_39	K06223	47.1	0.00000000000019	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0111926_39	phrog_56	113.2	2.9e-33	DNA methyltransferase	other
UniRef90	UHGV-0111926_39	UniRef90_UPI001C5FAD45	228.0	0	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-0111926_39	1236504.HMPREF2132_01695	216.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-0111926_39	MTase_II_00075	66.1	8.5e-30	Type II methyltransferase	RM
Pfam	UHGV-0111926_39	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
structural_annotation	UHGV-0111926_39	PF02086,NF008152,COG0338	N/A	N/A	N/A	N/A
PHROG	UHGV-0111926_40	phrog_1129	75.6	4.8e-22	holin	lysis
UniRef90	UHGV-0111926_40	UniRef90_A0A395X7B2	172.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0111926_40	411461.DORFOR_00721	114.0	5.06e-32	N/A	N/A
Pfam	UHGV-0111926_40	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0111926_40	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0111926_41	phrog_3366	91.8	7.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-0111926_41	476272.RUMHYD_01779	155.0	0	N/A	N/A
structural_annotation	UHGV-0111926_41	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0111926_42	phrog_556	50.0	0.0000000000000049	minor head protein	head and packaging
UniRef90	UHGV-0111926_42	UniRef90_UPI000E4989EB	281.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0111926_42	476272.RUMHYD_01780	149.0	6.02558e-44	N/A	N/A
structural_annotation	UHGV-0111926_42	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0111926_43	phrog_3266	94.1	1.1e-27	tail completion	connector
eggNOG-mapper	UHGV-0111926_43	476272.RUMHYD_01781	155.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0111926_43	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0111926_44	phrog_3099	128.6	4.4e-38	N/A	unknown function
eggNOG-mapper	UHGV-0111926_44	411902.CLOBOL_00129	170.0	0	N/A	N/A
structural_annotation	UHGV-0111926_44	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0111926_45	phrog_11299	72.2	8.5e-21	N/A	unknown function
eggNOG-mapper	UHGV-0111926_45	33035.JPJF01000106_gene3125	65.1	0.0000000000194	N/A	N/A
structural_annotation	UHGV-0111926_45	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0111926_46	phrog_706	130.7	1.1e-38	N/A	unknown function
UniRef90	UHGV-0111926_46	UniRef90_UPI001BAD00AD	204.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0111926_46	411459.RUMOBE_01383	338.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0111926_46	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0111926_46	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0111926_47	phrog_1535	454.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0111926_47	UniRef90_A0A173R880	525.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0111926_47	476272.RUMHYD_01785	514.0	0	phage tail tape measure protein	N/A
COG	UHGV-0111926_47	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0111926_47	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0111926_48	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0111926_49	phrog_6616	512.2	0	tail protein	tail
UniRef90	UHGV-0111926_49	UniRef90_UPI001D0E203F	2218.0	0	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0111926_49	33035.JPJF01000043_gene1002	258.0	0	N/A	N/A
Pfam	UHGV-0111926_49	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-0111926_49	PF05113,PF18432,NF033848,NF011735,COG4379	N/A	N/A	N/A	N/A
KOfam	UHGV-0111926_51	K07273	203.3	0	acm; lysozyme	N/A
PHROG	UHGV-0111926_51	phrog_291	154.6	1.4013e-45	endolysin	lysis
UniRef90	UHGV-0111926_51	UniRef90_A0A317UBE2	903.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0111926_51	476272.RUMHYD_02876	259.0	0	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	N/A
Pfam	UHGV-0111926_51	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0111926_51	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0111926_51	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-0111926_51	PF01183,TIGR02594,TIGR04303,COG3757,COG3942	N/A	N/A	N/A	N/A
KOfam	UHGV-0111926_52	K14059	105.9	6e-31	int; integrase	N/A
PHROG	UHGV-0111926_52	phrog_1	130.6	1.6e-38	integrase	integration and excision
UniRef90	UHGV-0111926_52	UniRef90_D4LPN8	718.0	0	Phage integrase family	N/A
eggNOG-mapper	UHGV-0111926_52	1235792.C808_05256	360.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0111926_52	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0111926_52	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0111926_52	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0111926_53	phrog_8545	65.6	7.3e-19	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0111926_53	UniRef90_UPI001C0EAFDF	281.0	0	OB-fold putative lipoprotein	N/A
eggNOG-mapper	UHGV-0111926_53	1304866.K413DRAFT_0836	192.0	0	tRNA_anti-like	N/A
Pfam	UHGV-0111926_53	PF12869	N/A	N/A	tRNA_anti-like	tRNA_anti-like
structural_annotation	UHGV-0111926_53	PF12869,PF10571,MF_01959,TIGR03943,COG5235	N/A	N/A	N/A	N/A
KOfam	UHGV-0111926_54	K07705	132.7	3e-39	lytT, lytR; two-component system, LytTR family, response regulator LytT	N/A
PHROG	UHGV-0111926_54	phrog_8810	129.3	3.3e-38	N/A	unknown function
UniRef90	UHGV-0111926_54	UniRef90_UPI001D0E4226	472.0	0	LytTR family DNA-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0111926_54	556261.HMPREF0240_03082	141.0	9.28e-39	response regulator	N/A
Pfam	UHGV-0111926_54	PF00072	N/A	N/A	Response regulator receiver domain	Response_reg
Pfam	UHGV-0111926_54	PF04397	N/A	N/A	LytTr DNA-binding domain	LytTR
COG	UHGV-0111926_54	COG3279	N/A	N/A	DNA-binding response regulator, LytR/AlgR family	N/A
structural_annotation	UHGV-0111926_54	PF04397,PF00072,MF_00981,NF010684,COG3279	N/A	N/A	N/A	N/A
KOfam	UHGV-0111926_56	K22299	50.6	0.000000000000049	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0111926_56	phrog_8	55.6	0.0000000000000014	transcriptional regulator	transcription regulation
UniRef90	UHGV-0111926_56	UniRef90_A0A1C6KHY6	74.7	6.17e-16	HTH-type transcriptional regulator immR	N/A
eggNOG-mapper	UHGV-0111926_56	411470.RUMGNA_03101	62.8	0.00000000000491	transcriptional regulator, XRE family	N/A
PADLOC	UHGV-0111926_56	retron_type_VI_hth_cluster2_1	44.3	0.0000000000054	N/A	Retron
Pfam	UHGV-0111926_56	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0111926_56	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
UniRef90	UHGV-0111926_57	UniRef90_UPI001D072BB4	129.0	3.14e-38	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0111926_57	743719.PaelaDRAFT_5623	75.9	2.16e-17	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0111926_57	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0111926_57	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0111926_60	1121115.AXVN01000006_gene2172	95.9	5.94e-26	N/A	N/A