UHGV-0112530 (vOTU-116921)

Viral Genome: UHGV-0112530

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0112530
vOTU ID	vOTU-116921
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_250950
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.49 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9801
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.44
Jumbo phage	No

Genome content
Genome length (bp)	32,172
GC content	52.54%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	60
CDS density	94%
Average CDS length (bps)	501.65
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 73.49)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0112530_1	K14059	79.7	6.3e-23	int; integrase	N/A
PHROG	UHGV-0112530_1	phrog_1	86.2	5.4e-25	integrase	integration and excision
UniRef90	UHGV-0112530_1	UniRef90_UPI001BB4753B	211.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0112530_1	1226322.HMPREF1545_01472	181.0	0	Belongs to the 'phage' integrase family	N/A
COG	UHGV-0112530_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
UniRef90	UHGV-0112530_2	UniRef90_A0A1C6C6J9	205.0	0	N/A	N/A
eggNOG-mapper	UHGV-0112530_2	1297617.JPJD01000077_gene1105	95.5	9.31e-22	cell wall binding repeat	N/A
COG	UHGV-0112530_2	COG2247	N/A	N/A	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	N/A
structural_annotation	UHGV-0112530_2	PF17118,MF_00612,NF002486,COG3012	N/A	N/A	N/A	N/A
PHROG	UHGV-0112530_3	phrog_19315	184.8	0	N/A	unknown function
UniRef90	UHGV-0112530_3	UniRef90_A0A096DF46	526.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0112530_3	742738.HMPREF9460_01346	526.0	0	IrrE N-terminal-like domain	N/A
Pfam	UHGV-0112530_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0112530_3	COG1592	N/A	N/A	Rubrerythrin	N/A
structural_annotation	UHGV-0112530_3	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0112530_4	K22299	48.7	0.00000000000017	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0112530_4	phrog_8	51.6	0.0000000000000072	transcriptional regulator	transcription regulation
UniRef90	UHGV-0112530_4	UniRef90_UPI0012AB6F6D	110.0	6.3e-29	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0112530_4	742740.HMPREF9474_03481	52.4	0.000000778	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0112530_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0112530_4	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0112530_4	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0112530_5	K22300	52.2	0.000000000000014	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0112530_5	phrog_8	51.3	0.000000000000031	transcriptional regulator	transcription regulation
UniRef90	UHGV-0112530_5	UniRef90_A0A856HZB1	108.0	9.33e-30	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0112530_5	693746.OBV_25500	60.8	0.0000000000126	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0112530_5	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0112530_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0112530_8	PF18186,NF033632	N/A	N/A	N/A	N/A
UniRef90	UHGV-0112530_11	UniRef90_A0A6I7G1H1	89.4	7.17e-22	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0112530_11	1048834.TC41_1894	47.4	0.00000344	sequence-specific DNA binding	N/A
Pfam	UHGV-0112530_11	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0112530_11	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0112530_11	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0112530_12	K22300	43.8	0.0000000000056	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0112530_12	phrog_8	57.3	3.9e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0112530_12	UniRef90_R6C8X0	81.3	1.4e-18	HTH-type transcriptional regulator AnsR family protein	N/A
eggNOG-mapper	UHGV-0112530_12	397290.C810_01482	71.2	0.00000000000000207	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0112530_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0112530_12	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0112530_12	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0112530_18	phrog_155	141.4	6.30024e-42	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0112530_18	UniRef90_UPI001BABF1B9	196.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0112530_18	97138.C820_00777	181.0	0	ERF superfamily	N/A
Pfam	UHGV-0112530_18	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0112530_18	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0112530_19	phrog_72	61.0	1.1e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0112530_19	UniRef90_A0A2Z4Q9W9	230.0	0	NinB	N/A
eggNOG-mapper	UHGV-0112530_19	445972.ANACOL_01825	123.0	4.02e-33	N/A	N/A
structural_annotation	UHGV-0112530_19	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0112530_20	phrog_7566	73.6	2.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-0112530_20	693746.OBV_25470	100.0	4.71e-26	N/A	N/A
KOfam	UHGV-0112530_21	K03111	136.0	4.6e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0112530_21	phrog_44	135.1	5e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0112530_21	UniRef90_A0A3A8YRX9	182.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0112530_21	1378168.N510_01674	169.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0112530_21	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0112530_21	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0112530_21	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0112530_21	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0112530_21	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0112530_22	phrog_19658	41.4	0.0000000000092	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0112530_22	796940.HMPREF9628_00167	97.4	2.85e-21	N/A	N/A
COG	UHGV-0112530_22	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0112530_22	PF01978,MF_01819,TIGR01610,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-0112530_23	K17680	176.4	0	PEO1; twinkle protein [EC:5.6.2.3]	N/A
PHROG	UHGV-0112530_23	phrog_239	154.7	1.4013e-45	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0112530_23	UniRef90_A0A1C5N602	617.0	0	DNA repair protein RadA	N/A
eggNOG-mapper	UHGV-0112530_23	1378168.N510_01441	531.0	0	N/A	N/A
Pfam	UHGV-0112530_23	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0112530_23	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0112530_23	PF03796,MF_04154,NF006606,COG0467	N/A	N/A	N/A	N/A
KOfam	UHGV-0112530_25	K01160	65.0	2.2e-18	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0112530_25	phrog_140	117.7	8.7e-35	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0112530_25	UniRef90_A0A2Z4WAX1	109.0	3.39e-28	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0112530_25	1123263.AUKY01000072_gene2102	98.2	2.49e-24	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0112530_25	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0112530_25	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0112530_25	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
UniRef90	UHGV-0112530_26	UniRef90_UPI001C3A10B1	74.3	0.0000000000000435	Zinc ribbon domain-containing protein	N/A
PHROG	UHGV-0112530_28	phrog_25732	42.8	0.0000000000017	N/A	unknown function
PHROG	UHGV-0112530_35	phrog_1485	106.6	2.4e-31	N/A	unknown function
UniRef90	UHGV-0112530_35	UniRef90_UPI001C127ADA	122.0	4.36e-33	nucleotide modification associated domain-containing protein	N/A
eggNOG-mapper	UHGV-0112530_35	1415774.U728_1099	99.0	1.29e-24	N/A	N/A
Pfam	UHGV-0112530_35	PF07659	N/A	N/A	Nucleotide modification associated domain 1	DUF1599
structural_annotation	UHGV-0112530_35	PF18909	N/A	N/A	N/A	N/A
UniRef90	UHGV-0112530_37	UniRef90_U2R3C0	197.0	0	Nascent polypeptide-associated complex domain protein	N/A
eggNOG-mapper	UHGV-0112530_37	1226322.HMPREF1545_00042	197.0	0	N/A	N/A
structural_annotation	UHGV-0112530_37	PF13542	N/A	N/A	N/A	N/A
KOfam	UHGV-0112530_38	K06909	126.8	2.3e-37	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0112530_38	phrog_10250	175.5	0	N/A	unknown function
UniRef90	UHGV-0112530_38	UniRef90_A0A2V2EHG7	611.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0112530_38	742738.HMPREF9460_02505	596.0	0	Terminase-like family	N/A
Pfam	UHGV-0112530_38	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
NCBIFam	UHGV-0112530_38	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0112530_38	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0112530_38	PF04466,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0112530_39	K09961	383.1	0	N/A	N/A
PHROG	UHGV-0112530_39	phrog_146	416.7	0	portal protein	head and packaging
UniRef90	UHGV-0112530_39	UniRef90_UPI001D0EF633	810.0	0	N/A	N/A
eggNOG-mapper	UHGV-0112530_39	1007096.BAGW01000022_gene2656	537.0	0	TIGRFAM phage-associated protein, HI1409 family	N/A
Pfam	UHGV-0112530_39	PF06381	N/A	N/A	Anti-CBASS protein Acb1-like	Abc1-like
NCBIFam	UHGV-0112530_39	TIGR01555.1	N/A	N/A	phage-associated protein, HI1409 family	N/A
COG	UHGV-0112530_39	COG3567	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0112530_39	PF06381,MF_04135,TIGR01555,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0112530_41	phrog_581	176.6	0	minor head protein	head and packaging
UniRef90	UHGV-0112530_41	UniRef90_UPI001958AD70	577.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0112530_41	742738.HMPREF9460_02508	557.0	0	Portal protein	N/A
Pfam	UHGV-0112530_41	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0112530_41	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0112530_41	PF06152	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0112530_42	PF18152	N/A	N/A	N/A	N/A
PHROG	UHGV-0112530_43	phrog_3896	81.2	7.9e-24	N/A	unknown function
UniRef90	UHGV-0112530_43	UniRef90_UPI00164BFAB0	56.2	0.00000000312	ribbon-helix-helix protein, CopG family	N/A
eggNOG-mapper	UHGV-0112530_43	397290.C810_01338	69.7	0.00000000000000236	N/A	N/A
KOfam	UHGV-0112530_45	K07741	75.9	1.4e-21	antB; anti-repressor protein	N/A
PHROG	UHGV-0112530_45	phrog_130	220.2	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0112530_45	UniRef90_A0A6N2R468	350.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0112530_45	1289596.M1PKL6_9CAUD	275.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0112530_45	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0112530_45	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
structural_annotation	UHGV-0112530_45	PF02498,PF03374,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
PHROG	UHGV-0112530_46	phrog_29883	63.6	3e-18	N/A	unknown function
UniRef90	UHGV-0112530_46	UniRef90_A0A1Y4L8M4	91.3	1.21e-22	Rubrerythrin domain-containing protein	N/A
KOfam	UHGV-0112530_47	K09960	195.1	0	N/A	N/A
PHROG	UHGV-0112530_47	phrog_16985	383.8	0	N/A	unknown function
UniRef90	UHGV-0112530_47	UniRef90_UPI00164BF670	373.0	0	N/A	N/A
eggNOG-mapper	UHGV-0112530_47	742738.HMPREF9460_02512	421.0	0	N/A	N/A
Pfam	UHGV-0112530_47	PF09979	N/A	N/A	N/A	DUF2213
COG	UHGV-0112530_47	COG3566	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0112530_47	PF09979,TIGR01543,COG3566	N/A	N/A	N/A	N/A
PHROG	UHGV-0112530_48	phrog_563	157.1	0	virion structural protein	head and packaging
UniRef90	UHGV-0112530_48	UniRef90_UPI00164A2541	145.0	8.03e-41	head fiber protein	N/A
eggNOG-mapper	UHGV-0112530_48	742738.HMPREF9460_02514	218.0	0	N/A	N/A
structural_annotation	UHGV-0112530_48	PF09956	N/A	N/A	N/A	N/A
PHROG	UHGV-0112530_49	phrog_264	215.0	0	major head protein	head and packaging
UniRef90	UHGV-0112530_49	UniRef90_UPI0012DE3201	486.0	0	N/A	N/A
eggNOG-mapper	UHGV-0112530_49	742738.HMPREF9460_02515	540.0	0	N/A	N/A
Pfam	UHGV-0112530_49	PF09950	N/A	N/A	N/A	DUF2184
COG	UHGV-0112530_49	COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0112530_49	PF09950,MF_04113,TIGR01554,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0112530_50	phrog_29824	140.2	3.30006e-42	N/A	unknown function
PHROG	UHGV-0112530_51	phrog_302	96.9	1.7e-28	virion structural protein	head and packaging
UniRef90	UHGV-0112530_51	UniRef90_UPI00164AB123	216.0	0	N/A	N/A
eggNOG-mapper	UHGV-0112530_51	742738.HMPREF9460_02517	219.0	0	N/A	N/A
Pfam	UHGV-0112530_51	PF13262	N/A	N/A	N/A	DUF4054
structural_annotation	UHGV-0112530_51	PF13262	N/A	N/A	N/A	N/A
PHROG	UHGV-0112530_52	phrog_615	87.4	1.4e-25	head-tail adaptor	connector
structural_annotation	UHGV-0112530_52	PF12206,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0112530_53	phrog_5	43.1	0.0000000000097	tail completion or Neck1 protein	connector
UniRef90	UHGV-0112530_53	UniRef90_UPI00164CB61C	177.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0112530_53	398512.JQKC01000052_gene2665	72.4	0.0000000000000915	Bacteriophage HK97-gp10, putative tail-component	N/A
structural_annotation	UHGV-0112530_53	PF04883,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0112530_54	phrog_525	45.5	0.0000000000014	N/A	unknown function
Pfam	UHGV-0112530_54	PF20765	N/A	N/A	N/A	DUF6838
structural_annotation	UHGV-0112530_54	PF20765,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0112530_55	phrog_30826	79.1	3.5e-23	N/A	unknown function
PHROG	UHGV-0112530_56	phrog_279	350.6	0	tail sheath	tail
UniRef90	UHGV-0112530_56	UniRef90_A0A2V2EK11	627.0	0	Phage tail sheath protein	N/A
eggNOG-mapper	UHGV-0112530_56	742738.HMPREF9460_02522	615.0	0	Phage tail sheath C-terminal domain	N/A
Pfam	UHGV-0112530_56	PF17481	N/A	N/A	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
Pfam	UHGV-0112530_56	PF04984	N/A	N/A	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
Pfam	UHGV-0112530_56	PF17482	N/A	N/A	Phage tail sheath C-terminal domain	Phage_sheath_1C
structural_annotation	UHGV-0112530_56	PF17482,PF04984,PF17481,COG4386	N/A	N/A	N/A	N/A
PHROG	UHGV-0112530_57	phrog_365	125.4	3.2e-37	tail protein	tail
UniRef90	UHGV-0112530_57	UniRef90_A0A174V246	259.0	0	Phage-like element PBSX protein xkdM	N/A
eggNOG-mapper	UHGV-0112530_57	742738.HMPREF9460_02523	259.0	0	Phage tail tube protein	N/A
Pfam	UHGV-0112530_57	PF09393	N/A	N/A	Phage tail tube protein	DUF2001
structural_annotation	UHGV-0112530_57	PF09393,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0112530_58	phrog_389	112.4	3.3e-33	tail protein XkdN-like	tail
UniRef90	UHGV-0112530_58	UniRef90_A0A174CUN9	192.0	0	Phage XkdN-like protein	N/A
eggNOG-mapper	UHGV-0112530_58	742738.HMPREF9460_02524	192.0	0	Phage XkdN-like tail assembly chaperone protein, TAC	N/A
Pfam	UHGV-0112530_58	PF08890	N/A	N/A	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
structural_annotation	UHGV-0112530_58	PF08890,COG4518	N/A	N/A	N/A	N/A
PHROG	UHGV-0112530_59	phrog_28231	78.2	8.3e-23	N/A	unknown function
KOfam	UHGV-0112530_60	K02469	79.5	2.3e-23	gyrA; DNA gyrase subunit A [EC:5.6.2.2]	N/A
PHROG	UHGV-0112530_60	phrog_1068	316.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0112530_60	UniRef90_UPI001A9A87F9	636.0	0	tape measure protein	N/A
eggNOG-mapper	UHGV-0112530_60	742738.HMPREF9460_02526	436.0	0	tape measure	N/A
Pfam	UHGV-0112530_60	PF20155	N/A	N/A	Tape measure protein	TMP_3
Pfam	UHGV-0112530_60	PF00521	N/A	N/A	DNA gyrase/topoisomerase IV, subunit A	DNA_topoisoIV
NCBIFam	UHGV-0112530_60	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0112530_60	COG5281	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0112530_60	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A