UHGV-0112628 (vOTU-045683)

Viral Genome: UHGV-0112628

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0112628
vOTU ID	vOTU-045683
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_238469
Associated BioSample	SAMEA3708587
Viral genome confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100 (Complete)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9811
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.46
Jumbo phage	No

Genome content
Genome length (bp)	43,239
GC content	57.14%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	59
CDS density	94%
Average CDS length (bps)	692.14
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0112628_1	UniRef90_UPI0012AD39DD	59.3	0.00000015	leucine-rich repeat protein	N/A
PHROG	UHGV-0112628_3	phrog_606	81.3	1.3e-23	terminase small subunit	head and packaging
UniRef90	UHGV-0112628_3	UniRef90_UPI00195648BB	171.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0112628_3	397290.C810_05185	148.0	2.17201e-43	DNA-packaging protein gp3	N/A
Pfam	UHGV-0112628_3	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0112628_3	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0112628_4	K06909	101.6	1e-29	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0112628_4	phrog_979	149.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0112628_4	UniRef90_A0A1Y4WJ48	697.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0112628_4	748224.HMPREF9436_01395	558.0	0	Terminase-like family	N/A
Pfam	UHGV-0112628_4	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0112628_4	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0112628_4	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0112628_5	phrog_156	318.4	0	portal protein	head and packaging
UniRef90	UHGV-0112628_5	UniRef90_A0A8D9UH10	686.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0112628_5	748224.HMPREF9436_01396	487.0	0	N/A	N/A
structural_annotation	UHGV-0112628_5	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0112628_6	NF011128,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0112628_7	phrog_13908	232.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0112628_7	748224.HMPREF9436_01398	63.5	0.0000000296	Cysteine protease Prp	N/A
COG	UHGV-0112628_7	COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0112628_8	phrog_1357	254.7	0	major head protein	head and packaging
UniRef90	UHGV-0112628_8	UniRef90_A0A8D9UH64	501.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0112628_8	1449126.JQKL01000003_gene1695	452.0	0	N/A	N/A
Pfam	UHGV-0112628_8	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0112628_8	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0112628_8	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0112628_9	phrog_15239	77.2	1.8e-22	N/A	unknown function
eggNOG-mapper	UHGV-0112628_9	1449126.JQKL01000003_gene1694	52.0	0.000000461	N/A	N/A
KOfam	UHGV-0112628_10	K06236	175.9	0	COL1A; collagen type I alpha	N/A
PHROG	UHGV-0112628_10	phrog_3420	89.4	9.6e-34	N/A	unknown function
UniRef90	UHGV-0112628_10	UniRef90_UPI00068BE71D	410.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0112628_10	1519439.JPJG01000060_gene1892	410.0	0	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0112628_10	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0112628_10	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0112628_10	PF10651,NF033814	N/A	N/A	N/A	N/A
PHROG	UHGV-0112628_11	phrog_10993	268.2	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0112628_11	UniRef90_A0A3D4D8F0	702.0	0	N/A	N/A
eggNOG-mapper	UHGV-0112628_11	1121334.KB911071_gene1970	247.0	0	N/A	N/A
Pfam	UHGV-0112628_11	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0112628_11	PF19789	N/A	N/A	N/A	N/A
PHROG	UHGV-0112628_12	phrog_27545	139.8	9.99967e-42	N/A	unknown function
UniRef90	UHGV-0112628_12	UniRef90_A0A2V2GQB6	157.0	8.40779e-45	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0112628_12	1519439.JPJG01000060_gene1895	354.0	0	N/A	N/A
Pfam	UHGV-0112628_12	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-0112628_12	PF16170	N/A	N/A	N/A	N/A
PHROG	UHGV-0112628_13	phrog_12105	57.0	4.2e-16	N/A	unknown function
eggNOG-mapper	UHGV-0112628_13	1519439.JPJG01000060_gene1891	56.6	0.0000000144	N/A	N/A
eggNOG-mapper	UHGV-0112628_14	1226322.HMPREF1545_00783	77.0	0.000000000000494	Chaperone of endosialidase	N/A
structural_annotation	UHGV-0112628_14	PF07902,NF041249	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0112628_15	PF18707,NF041740,COG5501	N/A	N/A	N/A	N/A
PHROG	UHGV-0112628_17	phrog_511	187.7	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0112628_17	1226322.HMPREF1545_00785	441.0	0	N/A	N/A
structural_annotation	UHGV-0112628_17	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
UniRef90	UHGV-0112628_18	UniRef90_A0A396K636	69.3	0.00000000354	N/A	N/A
eggNOG-mapper	UHGV-0112628_18	1203606.HMPREF1526_02741	107.0	2.64e-23	N/A	N/A
PHROG	UHGV-0112628_19	phrog_22978	833.6	0	N/A	unknown function
UniRef90	UHGV-0112628_19	UniRef90_A0A3D4D8G0	903.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-0112628_19	1519439.JPJG01000060_gene1905	529.0	0	N/A	N/A
Pfam	UHGV-0112628_19	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
PHROG	UHGV-0112628_20	phrog_937	45.2	0.0000000000018	hemolysin	other
eggNOG-mapper	UHGV-0112628_20	1519439.JPJG01000023_gene533	72.0	0.00000000000000384	N/A	N/A
PHROG	UHGV-0112628_22	phrog_13256	64.5	1.1e-18	N/A	unknown function
eggNOG-mapper	UHGV-0112628_22	1226322.HMPREF1545_00132	74.7	6.52e-17	N/A	N/A
PHROG	UHGV-0112628_23	phrog_21357	116.8	1.6e-34	endolysin	lysis
UniRef90	UHGV-0112628_23	UniRef90_R5SN87	258.0	0	Peptidase C51 domain-containing protein	N/A
eggNOG-mapper	UHGV-0112628_23	1007096.BAGW01000022_gene2648	146.0	1.93001e-41	CHAP domain	N/A
Pfam	UHGV-0112628_23	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-0112628_23	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0112628_23	TIGR02594	N/A	N/A	N/A	N/A
UniRef90	UHGV-0112628_24	UniRef90_A0A8D9PDQ3	76.6	6.14e-17	ECF sigma factor	N/A
Pfam	UHGV-0112628_24	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
structural_annotation	UHGV-0112628_24	PF04545,MF_00674,NF009179,COG1342	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0112628_27	PF18573,NF033147	N/A	N/A	N/A	N/A
KOfam	UHGV-0112628_30	K14059	133.7	2.7e-39	int; integrase	N/A
PHROG	UHGV-0112628_30	phrog_1	142.5	4.1002e-42	integrase	integration and excision
UniRef90	UHGV-0112628_30	UniRef90_G4L0W3	400.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0112628_30	693746.OBV_43340	400.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0112628_30	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0112628_30	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0112628_30	PF00589,PF13495,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0112628_31	UniRef90_R5HRH2	52.4	0.00000596	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0112628_31	537007.BLAHAN_06565	49.3	0.00000546	sequence-specific DNA binding	N/A
Pfam	UHGV-0112628_31	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0112628_31	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0112628_31	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0112628_32	UniRef90_UPI001BB4762F	117.0	3.85e-27	DnaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0112628_32	715451.ambt_14505	89.4	1.53e-17	N/A	N/A
eggNOG-mapper	UHGV-0112628_34	1437600.JDUI01000007_gene828	54.7	0.00000281	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0112628_34	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0112628_34	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0112628_34	PF01381,MF_00535,NF041951,TIGR02607,COG3655,COG3093	N/A	N/A	N/A	N/A
UniRef90	UHGV-0112628_35	UniRef90_N9Z4Q7	55.1	0.0000000141	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0112628_35	742733.HMPREF9469_01812	48.9	0.00000495	helix-turn-helix	N/A
COG	UHGV-0112628_35	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0112628_35	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0112628_37	693746.OBV_43260	62.0	0.00000000000513	N/A	N/A
structural_annotation	UHGV-0112628_37	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0112628_41	phrog_434	283.6	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0112628_41	UniRef90_U2SK35	434.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0112628_41	1226322.HMPREF1545_00014	434.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0112628_41	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0112628_41	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0112628_41	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0112628_41	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
KOfam	UHGV-0112628_42	K07455	162.9	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0112628_42	phrog_148	169.8	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0112628_42	UniRef90_UPI0018C50A8E	327.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0112628_42	1196028.ALEF01000043_gene487	218.0	0	RecT family	N/A
Pfam	UHGV-0112628_42	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0112628_42	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0112628_42	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0112628_42	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0112628_43	K03111	122.7	5.3e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0112628_43	phrog_44	120.4	1.8e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0112628_43	UniRef90_R5SNS5	148.0	3.13891e-43	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0112628_43	1519439.JPJG01000082_gene432	147.0	1.45735e-43	Single-strand binding protein family	N/A
Pfam	UHGV-0112628_43	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0112628_43	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0112628_43	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0112628_43	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0112628_43	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0112628_44	phrog_16304	116.7	2.5e-34	N/A	unknown function
UniRef90	UHGV-0112628_44	UniRef90_A0A810PZI8	159.0	1.4013e-45	N/A	N/A
eggNOG-mapper	UHGV-0112628_44	1265490.JHVY01000003_gene3091	91.3	1.22e-19	N/A	N/A
Pfam	UHGV-0112628_44	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0112628_44	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0112628_45	K02315	174.5	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0112628_45	phrog_50	154.0	1.4013e-45	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0112628_45	UniRef90_UPI00137A9A0F	284.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0112628_45	203119.Cthe_2467	259.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-0112628_45	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
NCBIFam	UHGV-0112628_45	NF005992.0	N/A	N/A	hypothetical protein	N/A
COG	UHGV-0112628_45	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0112628_45	PF01695,MF_00377,NF005992,COG1484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0112628_48	PF02767,MF_00317,TIGR00663,COG0592	N/A	N/A	N/A	N/A
PHROG	UHGV-0112628_49	phrog_190	117.1	1.4e-34	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0112628_49	UniRef90_UPI001C0170D2	112.0	1.37e-28	N/A	N/A
eggNOG-mapper	UHGV-0112628_49	1226322.HMPREF1545_00295	130.0	1.21e-36	N/A	N/A
Pfam	UHGV-0112628_49	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0112628_49	PF06356	N/A	N/A	N/A	N/A
COG	UHGV-0112628_51	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0112628_51	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0112628_52	K00571	102.8	4.5e-30	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0112628_52	phrog_23224	194.6	0	DNA methyltransferase	other
UniRef90	UHGV-0112628_52	UniRef90_A0A1Q6T6B8	360.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0112628_52	718252.FP2_06750	358.0	0	DNA methylase	N/A
PADLOC	UHGV-0112628_52	MTase_II_00172	87.7	5.4e-27	Type II methyltransferase	RM
Pfam	UHGV-0112628_52	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0112628_52	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0112628_52	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
Pfam	UHGV-0112628_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0112628_53	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0112628_53	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0112628_54	K00558	122.2	3.8e-36	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0112628_54	phrog_116	135.6	2.69999e-40	DNA methyltransferase	other
UniRef90	UHGV-0112628_54	UniRef90_K1R461	323.0	0	DNA-cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0112628_54	887325.HMPREF0381_0364	230.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0112628_54	oMTase_00004	220.4	0	orphan methyltransferase	RM
Pfam	UHGV-0112628_54	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0112628_54	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-0112628_55	K00558	46.3	2e-19	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0112628_55	phrog_16427	88.1	2.5e-27	DNA methyltransferase	other
UniRef90	UHGV-0112628_55	UniRef90_A0A6N9PX21	230.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0112628_55	718252.FP2_16350	202.0	0	C-5 cytosine-specific DNA methylase	N/A
Pfam	UHGV-0112628_55	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0112628_55	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
UniRef90	UHGV-0112628_58	UniRef90_A0A098GES5	89.7	2.21e-21	Putative phage associated protein	N/A
structural_annotation	UHGV-0112628_58	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A