UHGV-0113002 (vOTU-008439)

Viral Genome: UHGV-0113002

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0113002
vOTU ID	vOTU-008439
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_285097
Associated BioSample	SAMEA4378237
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	Yes
CheckV viral markers	7
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9648
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.69
Jumbo phage	No

Genome content
Genome length (bp)	38,943
GC content	38.18%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	41
CDS density	96%
Average CDS length (bps)	907.68
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0113002_1	411459.RUMOBE_01706	62.8	0.0000000000344	N/A	N/A
Pfam	UHGV-0113002_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
PHROG	UHGV-0113002_2	phrog_10678	50.1	0.0000000000000041	N/A	unknown function
UniRef90	UHGV-0113002_3	UniRef90_A0A3D4CAN7	754.0	0	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-0113002_3	717606.PaecuDRAFT_1762	99.8	1.35e-20	Papain-like cysteine protease AvrRpt2	N/A
Pfam	UHGV-0113002_3	PF13529	N/A	N/A	Peptidase_C39 like family	Peptidase_C39_2
Pfam	UHGV-0113002_3	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0113002_3	COG0768	N/A	N/A	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	N/A
structural_annotation	UHGV-0113002_3	PF03412,PF08239,NF040678,COG3807,COG3271	N/A	N/A	N/A	N/A
PHROG	UHGV-0113002_4	phrog_18218	51.9	0.000000000000014	N/A	unknown function
eggNOG-mapper	UHGV-0113002_4	1378168.N510_02472	57.4	0.0000000047	N/A	N/A
PHROG	UHGV-0113002_5	phrog_1863	84.0	8.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-0113002_5	1203606.HMPREF1526_02027	88.2	4.38e-22	N/A	N/A
KOfam	UHGV-0113002_7	K07296	51.4	0.000000000000011	ADIPOQ, ACDC; adiponectin	N/A
PHROG	UHGV-0113002_7	phrog_10972	270.6	0	tail fiber protein	tail
UniRef90	UHGV-0113002_7	UniRef90_R6QMQ6	562.0	0	Hep/Hag repeat protein	N/A
eggNOG-mapper	UHGV-0113002_7	1160721.RBI_I01572	72.8	0.00000000000524	N/A	N/A
Pfam	UHGV-0113002_7	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
Pfam	UHGV-0113002_7	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
structural_annotation	UHGV-0113002_7	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0113002_8	phrog_22978	2416.7	0	N/A	unknown function
UniRef90	UHGV-0113002_8	UniRef90_R6ILN9	901.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0113002_8	585503.HMPREF7545_1744	151.0	3.62e-33	N/A	N/A
Pfam	UHGV-0113002_8	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
Pfam	UHGV-0113002_8	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
eggNOG-mapper	UHGV-0113002_10	1410650.JHWL01000003_gene2815	72.8	0.0000000000129	N/A	N/A
PHROG	UHGV-0113002_12	phrog_511	599.5	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0113002_12	1226322.HMPREF1545_00785	204.0	0	N/A	N/A
structural_annotation	UHGV-0113002_12	PF11134,MF_01348,NF038015,NF038128,COG3292	N/A	N/A	N/A	N/A
PHROG	UHGV-0113002_13	phrog_12105	162.0	0	N/A	unknown function
PHROG	UHGV-0113002_15	phrog_1357	248.6	0	major head protein	head and packaging
UniRef90	UHGV-0113002_15	UniRef90_A0A7G9GB60	301.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0113002_15	1410650.JHWL01000003_gene2830	281.0	0	N/A	N/A
Pfam	UHGV-0113002_15	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0113002_15	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0113002_15	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0113002_16	phrog_13908	347.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0113002_16	1410650.JHWL01000003_gene2831	133.0	4.53e-34	N/A	N/A
KOfam	UHGV-0113002_17	K07584	44.6	0.0000000000026	N/A	N/A
PHROG	UHGV-0113002_17	phrog_4478	51.2	0.000000000000014	peptidase	other
UniRef90	UHGV-0113002_17	UniRef90_R6QMR4	212.0	0	Predicted ribosomal protein	N/A
Pfam	UHGV-0113002_17	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0113002_17	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0113002_17	PF04327,NF011124,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0113002_18	phrog_156	367.3	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0113002_18	1410650.JHWL01000003_gene2833	432.0	0	N/A	N/A
structural_annotation	UHGV-0113002_18	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0113002_19	K06909	147.8	9.10844e-44	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0113002_19	phrog_979	146.1	1.54143e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0113002_19	UniRef90_R6Q637	983.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0113002_19	1410650.JHWL01000003_gene2834	556.0	0	N/A	N/A
Pfam	UHGV-0113002_19	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0113002_19	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0113002_19	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0113002_20	phrog_1206	76.0	6.6e-24	terminase small subunit	head and packaging
PHROG	UHGV-0113002_23	phrog_3584	228.4	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0113002_23	UniRef90_R6RCC6	504.0	0	Gp31	N/A
eggNOG-mapper	UHGV-0113002_23	1415775.U729_1544	163.0	0	N/A	N/A
structural_annotation	UHGV-0113002_23	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0113002_25	phrog_34937	163.2	0	N/A	unknown function
KOfam	UHGV-0113002_30	K00558	227.5	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0113002_30	phrog_13621	292.6	0	N/A	unknown function
UniRef90	UHGV-0113002_30	UniRef90_A0A3D4CBK7	936.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0113002_30	1121334.KB911073_gene1852	624.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0113002_30	MTase_II_00164	107.4	4.79999e-40	Type II methyltransferase	RM
Pfam	UHGV-0113002_30	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0113002_30	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0113002_30	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0113002_32	K03111	103.1	4.7e-30	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0113002_32	phrog_44	118.0	8.9e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0113002_32	UniRef90_R6QMS7	246.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0113002_32	718252.FP2_06770	125.0	4.36e-35	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0113002_32	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0113002_32	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0113002_32	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0113002_32	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0113002_32	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0113002_34	phrog_1163	108.8	7e-32	N/A	unknown function
UniRef90	UHGV-0113002_34	UniRef90_R6RCD3	350.0	0	Putative phage replication protein	N/A
eggNOG-mapper	UHGV-0113002_34	1295642.H839_08149	98.2	4.36e-22	Replication initiation and membrane attachment	N/A
Pfam	UHGV-0113002_34	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0113002_34	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0113002_34	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0113002_34	PF09524,TIGR02220	N/A	N/A	N/A	N/A
UniRef90	UHGV-0113002_37	UniRef90_UPI001D00C35A	58.5	0.000000000672	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0113002_37	1273103.NM10_03301	51.2	0.0000000934	N/A	N/A
Pfam	UHGV-0113002_37	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0113002_37	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0113002_38	K22300	62.3	1.1e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0113002_38	phrog_8	50.0	0.000000000000055	transcriptional regulator	transcription regulation
UniRef90	UHGV-0113002_38	UniRef90_A0A1M4M4U7	92.0	4.02e-21	Transcriptional regulator, Cro/CI family	N/A
eggNOG-mapper	UHGV-0113002_38	1262914.BN533_01956	83.2	1.87e-18	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0113002_38	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0113002_38	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0113002_38	PF12844,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0113002_39	phrog_1914	139.2	2.59997e-41	N/A	unknown function
UniRef90	UHGV-0113002_39	UniRef90_UPI001D082E60	211.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0113002_39	1160721.RBI_I01604	197.0	0	N/A	N/A
Pfam	UHGV-0113002_39	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0113002_39	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0113002_39	PF06114,COG2856	N/A	N/A	N/A	N/A
UniRef90	UHGV-0113002_40	UniRef90_R6Q652	333.0	0	Ig-like domain-containing surface protein	N/A
eggNOG-mapper	UHGV-0113002_40	1163671.JAGI01000002_gene1685	58.5	0.000000212	Flagellar rod assembly protein muramidase FlgJ	N/A
NCBIFam	UHGV-0113002_40	NF033223.2	N/A	N/A	YHYH domain-containing protein	N/A
COG	UHGV-0113002_40	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
KOfam	UHGV-0113002_41	K14059	205.5	0	int; integrase	N/A
PHROG	UHGV-0113002_41	phrog_1	188.9	0	integrase	integration and excision
UniRef90	UHGV-0113002_41	UniRef90_UPI00082B31A6	218.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0113002_41	1203606.HMPREF1526_00215	192.0	0	Phage integrase family	N/A
Pfam	UHGV-0113002_41	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0113002_41	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0113002_41	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0113002_41	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A