UHGV-0113338 (vOTU-104447)

Viral Genome: UHGV-0113338

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0113338
vOTU ID	vOTU-104447
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_307466
Associated BioSample	SAMEA103958142
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.43 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9672
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.55
Jumbo phage	No

Genome content
Genome length (bp)	29,433
GC content	57.17%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	49
CDS density	92%
Average CDS length (bps)	550.47
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 72.43)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0113338_1	K07129	225.6	0	N/A	N/A
UniRef90	UHGV-0113338_1	UniRef90_R7IIC6	619.0	0	Radical SAM domain protein	N/A
eggNOG-mapper	UHGV-0113338_1	1499683.CCFF01000017_gene2068	434.0	0	Radical SAM	N/A
Pfam	UHGV-0113338_1	PF04055	N/A	N/A	Radical SAM superfamily	Radical_SAM
COG	UHGV-0113338_1	COG2108	N/A	N/A	N/A	N/A
KOfam	UHGV-0113338_2	K06400	318.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0113338_2	phrog_95	315.4	0	integrase	integration and excision
UniRef90	UHGV-0113338_2	UniRef90_UPI00189CB9E2	525.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0113338_2	1235835.C814_00825	518.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0113338_2	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0113338_2	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0113338_2	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0113338_2	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0113338_2	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0113338_3	UniRef90_A0A6J6H9Q5	56.2	0.00000000451	Unannotated protein	N/A
eggNOG-mapper	UHGV-0113338_3	483216.BACEGG_01163	51.6	0.0000000617	N/A	N/A
KOfam	UHGV-0113338_4	K22300	43.7	0.0000000000058	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0113338_4	phrog_8	58.0	2.6e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0113338_4	UniRef90_UPI001D07859A	94.4	3.47e-22	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0113338_4	1121423.JONT01000002_gene2372	89.7	9.23e-21	Peptidase S24-like	N/A
Pfam	UHGV-0113338_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0113338_4	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0113338_4	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0113338_5	UniRef90_UPI0004E26D7B	53.9	0.0000000532	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0113338_5	1121423.JONT01000002_gene2373	53.9	0.0000000178	N/A	N/A
Pfam	UHGV-0113338_5	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0113338_5	PF05339,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0113338_6	phrog_10993	76.8	2.6e-22	Hoc-like head decoration	head and packaging
eggNOG-mapper	UHGV-0113338_6	552398.HMPREF0866_01588	62.4	0.0000000299	N/A	N/A
Pfam	UHGV-0113338_6	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0113338_6	PF19789	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0113338_10	PF10656	N/A	N/A	N/A	N/A
KOfam	UHGV-0113338_13	K19157	119.2	3.8e-35	yafQ; mRNA interferase YafQ [EC:3.1.-.-]	N/A
PHROG	UHGV-0113338_13	phrog_7251	106.7	1e-31	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0113338_13	UniRef90_E0QS67	122.0	1.16e-34	Addiction module toxin, RelE/StbE family	N/A
eggNOG-mapper	UHGV-0113338_13	596328.HMPREF0578_2062	126.0	5.83e-37	Bacterial toxin of type II toxin-antitoxin system, YafQ	N/A
Pfam	UHGV-0113338_13	PF15738	N/A	N/A	Bacterial toxin of type II toxin-antitoxin system, YafQ	YafQ_toxin
NCBIFam	UHGV-0113338_13	TIGR02385.1	N/A	N/A	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	N/A
COG	UHGV-0113338_13	COG3041	N/A	N/A	mRNA-degrading endonuclease YafQ (mRNA interferase), toxin component of the YafQ-DinJ toxin-antitoxin module	N/A
structural_annotation	UHGV-0113338_13	PF15738,TIGR00053,COG3041	N/A	N/A	N/A	N/A
KOfam	UHGV-0113338_14	K07473	104.6	1.2e-30	dinJ; DNA-damage-inducible protein J	N/A
PHROG	UHGV-0113338_14	phrog_2737	84.6	5.7e-25	N/A	unknown function
UniRef90	UHGV-0113338_14	UniRef90_UPI001A5FCD10	109.0	2.89e-29	type II toxin-antitoxin system RelB/DinJ family antitoxin	N/A
eggNOG-mapper	UHGV-0113338_14	596328.HMPREF0578_2063	107.0	2.71e-29	RelB antitoxin	N/A
Pfam	UHGV-0113338_14	PF04221	N/A	N/A	RelB antitoxin	RelB
NCBIFam	UHGV-0113338_14	TIGR02384.1	N/A	N/A	type II toxin-antitoxin system RelB/DinJ family antitoxin	N/A
COG	UHGV-0113338_14	COG3077	N/A	N/A	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	N/A
structural_annotation	UHGV-0113338_14	PF04221,TIGR02384,COG3077	N/A	N/A	N/A	N/A
KOfam	UHGV-0113338_15	K03111	87.7	2.6e-25	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0113338_15	phrog_44	84.8	1.6e-24	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0113338_15	UniRef90_N2BB22	89.0	3.9e-20	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0113338_15	1235802.C823_00317	89.0	6.54e-21	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0113338_15	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0113338_15	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0113338_15	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0113338_15	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0113338_16	phrog_190	126.0	2.7e-37	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0113338_16	UniRef90_A0A6N7XIA3	126.0	4.16e-35	N/A	N/A
eggNOG-mapper	UHGV-0113338_16	1236514.BAKL01000051_gene3708	99.0	5.42e-25	N/A	N/A
Pfam	UHGV-0113338_16	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0113338_16	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0113338_18	phrog_4973	45.1	0.0000000000016	N/A	unknown function
UniRef90	UHGV-0113338_18	UniRef90_A0A1W1YSW9	63.5	0.0000000000256	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0113338_18	1038869.AXAN01000006_gene942	53.1	0.0000000646	Helix-turn-helix domain	N/A
Pfam	UHGV-0113338_18	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0113338_18	PF14090,TIGR00373,COG4344	N/A	N/A	N/A	N/A
PHROG	UHGV-0113338_19	phrog_186	59.6	5.3e-17	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0113338_19	UniRef90_A0A3D5IDX7	561.0	0	DnaB_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0113338_19	1139219.I569_00217	60.5	0.000000108	Replication initiation and membrane attachment	N/A
Pfam	UHGV-0113338_19	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
COG	UHGV-0113338_19	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0113338_19	PF03444,MF_01911,TIGR01610,COG5529	N/A	N/A	N/A	N/A
PHROG	UHGV-0113338_22	phrog_36	67.9	1.9e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0113338_22	UniRef90_UPI000368796A	107.0	5.97e-27	N/A	N/A
eggNOG-mapper	UHGV-0113338_22	1120978.KB894081_gene99	107.0	1.03e-27	N/A	N/A
COG	UHGV-0113338_22	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0113338_22	PF07374,MF_00674,NF008895,COG1191	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0113338_24	PF01402,NF041793,COG4710	N/A	N/A	N/A	N/A
UniRef90	UHGV-0113338_26	UniRef90_A0A3D2GX58	155.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0113338_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0113338_26	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0113338_26	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0113338_28	K07474	146.2	3.69943e-43	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0113338_28	phrog_51	154.0	1.4013e-45	terminase small subunit	head and packaging
UniRef90	UHGV-0113338_28	UniRef90_A0A3D5IBW1	301.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0113338_28	1256908.HMPREF0373_00489	176.0	0	Terminase small subunit	N/A
Pfam	UHGV-0113338_28	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0113338_28	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0113338_28	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0113338_29	K06909	410.6	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0113338_29	phrog_3717	245.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0113338_29	UniRef90_A0A1Q6Q1R5	859.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0113338_29	861454.HMPREF9099_00528	576.0	0	Phage terminase large subunit	N/A
Pfam	UHGV-0113338_29	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0113338_29	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0113338_29	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0113338_29	COG1783	N/A	N/A	Phage terminase large subunit	N/A
HAMAP	UHGV-0113338_29	MF_04145	N/A	N/A	Terminase, large subunit	N/A
structural_annotation	UHGV-0113338_29	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0113338_30	UniRef90_UPI0018835F0C	90.9	1.39e-16	collagen-like protein	N/A
eggNOG-mapper	UHGV-0113338_30	476272.RUMHYD_00002	104.0	6.62e-22	N/A	N/A
PHROG	UHGV-0113338_31	phrog_64	289.9	0	portal protein	head and packaging
UniRef90	UHGV-0113338_31	UniRef90_A0A3D2GX93	877.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-0113338_31	1235800.C819_02239	572.0	0	phage portal protein, SPP1	N/A
Pfam	UHGV-0113338_31	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0113338_31	PF05133,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0113338_32	K11044	84.2	8.3e-25	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	N/A
PHROG	UHGV-0113338_32	phrog_595	217.5	0	head maturation protease	head and packaging
UniRef90	UHGV-0113338_32	UniRef90_A0A3D5ID44	568.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0113338_32	1256908.HMPREF0373_00484	291.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-0113338_32	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
Pfam	UHGV-0113338_32	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
COG	UHGV-0113338_32	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0113338_32	PF04233,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0113338_35	phrog_1129	76.8	1.9e-22	holin	lysis
UniRef90	UHGV-0113338_35	UniRef90_A0A3D5IBP7	162.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0113338_35	411461.DORFOR_00721	104.0	3.39e-28	N/A	N/A
Pfam	UHGV-0113338_35	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0113338_35	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-0113338_36	K21471	50.8	0.000000000000038	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	N/A
PHROG	UHGV-0113338_36	phrog_2649	69.7	2.5e-20	endolysin	lysis
UniRef90	UHGV-0113338_36	UniRef90_A0A3D5IDY5	253.0	0	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0113338_36	1007096.BAGW01000014_gene1097	79.3	0.000000000000043	NLP P60 protein	N/A
Pfam	UHGV-0113338_36	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0113338_36	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0113338_36	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0113338_36	PF00877,PF01471,NF033742,NF038080,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0113338_37	phrog_194	67.7	2.3e-19	head scaffolding protein	head and packaging
UniRef90	UHGV-0113338_37	UniRef90_UPI001373E5C4	106.0	4.54e-25	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0113338_37	929506.CbC4_1215	72.0	0.000000000000854	Phage minor structural protein GP20	N/A
Pfam	UHGV-0113338_37	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0113338_37	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0113338_38	phrog_544	238.6	0	major head protein	head and packaging
UniRef90	UHGV-0113338_38	UniRef90_UPI001C0F52E5	459.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0113338_38	411471.SUBVAR_06940	273.0	0	N/A	N/A
NCBIFam	UHGV-0113338_38	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0113338_38	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0113338_39	phrog_1236	148.6	2.66247e-44	head protein	head and packaging
eggNOG-mapper	UHGV-0113338_39	1256908.HMPREF0373_00475	155.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0113338_39	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-0113338_40	phrog_1059	89.1	3.3e-26	head-tail adaptor	connector
UniRef90	UHGV-0113338_40	UniRef90_A0A1C6E9J3	145.0	3.89561e-43	Bacteriophage head-tail adaptor	N/A
eggNOG-mapper	UHGV-0113338_40	1256908.HMPREF0373_00474	121.0	3.39e-34	N/A	N/A
Pfam	UHGV-0113338_40	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-0113338_40	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0113338_41	UniRef90_UPI001379FEE4	109.0	1.25e-27	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0113338_41	1256908.HMPREF0373_00473	97.8	6.71e-24	N/A	N/A
Pfam	UHGV-0113338_41	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0113338_41	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0113338_42	1235800.C819_02229	115.0	2.65e-31	N/A	N/A
structural_annotation	UHGV-0113338_42	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0113338_43	phrog_885	185.4	0	major tail protein	tail
eggNOG-mapper	UHGV-0113338_43	1256908.HMPREF0373_00471	177.0	0	N/A	N/A
structural_annotation	UHGV-0113338_43	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0113338_44	phrog_1021	73.8	3.5e-22	N/A	unknown function
eggNOG-mapper	UHGV-0113338_44	1256908.HMPREF0373_00470	84.7	4.31e-19	N/A	N/A
PHROG	UHGV-0113338_45	phrog_1294	40.9	0.000000000028	peptide methionine sulfoxide reductase	other
PHROG	UHGV-0113338_47	phrog_23464	257.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0113338_47	1232452.BAIB02000007_gene1616	183.0	0	phage tail tape measure protein	N/A
COG	UHGV-0113338_47	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-0113338_48	phrog_6900	249.2	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0113338_48	1123312.KB904569_gene357	301.0	0	Phage tail tape measure protein TP901	N/A
COG	UHGV-0113338_48	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-0113338_49	phrog_33	48.2	0.00000000000028	distal tail protein Dit	tail
UniRef90	UHGV-0113338_49	UniRef90_A0A351TQW0	197.0	0	MtfA protein	N/A
eggNOG-mapper	UHGV-0113338_49	1120933.ATUY01000002_gene165	169.0	0	N/A	N/A
NCBIFam	UHGV-0113338_49	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
structural_annotation	UHGV-0113338_49	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A