UHGV-0113972 (vOTU-100314)

Viral Genome: UHGV-0113972

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0113972
vOTU ID	vOTU-100314
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_302373
Associated BioSample	SAMEA103958116
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.39 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9797
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.69
Jumbo phage	No

Genome content
Genome length (bp)	31,498
GC content	50.72%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	51
CDS density	94%
Average CDS length (bps)	581.71
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 83.39)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0113972_1	PF10651,NF009453	N/A	N/A	N/A	N/A
PHROG	UHGV-0113972_3	phrog_1067	356.8	0	minor head protein	head and packaging
UniRef90	UHGV-0113972_3	UniRef90_R6GLF8	344.0	0	Phage minor structural protein region	N/A
eggNOG-mapper	UHGV-0113972_3	1160721.RBI_I01574	323.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0113972_3	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0113972_3	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0113972_3	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0113972_3	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0113972_4	phrog_33	67.8	2.9e-19	distal tail protein Dit	tail
UniRef90	UHGV-0113972_4	UniRef90_UPI00164BA811	137.0	1.78e-36	phage tail family protein	N/A
eggNOG-mapper	UHGV-0113972_4	1444306.JFZC01000034_gene2623	152.0	5.88545e-43	tail component	N/A
COG	UHGV-0113972_4	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0113972_4	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0113972_5	phrog_58	94.4	6.1e-32	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0113972_5	1089553.Tph_c23060	261.0	0	lysine exporter protein (LysE YggA)	N/A
COG	UHGV-0113972_5	COG5185	N/A	N/A	Chromosome segregation protein NDC80, interacts with SMC proteins	N/A
structural_annotation	UHGV-0113972_5	PF05537,MF_04138,COG5281	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0113972_6	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0113972_7	phrog_88	80.6	2e-23	major tail protein	tail
UniRef90	UHGV-0113972_7	UniRef90_UPI001D07B441	135.0	5.9e-37	major tail protein	N/A
eggNOG-mapper	UHGV-0113972_7	411459.RUMOBE_00930	122.0	1.97e-32	N/A	N/A
NCBIFam	UHGV-0113972_7	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0113972_7	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0113972_8	phrog_78	54.2	0.0000000000000029	tail terminator	connector
eggNOG-mapper	UHGV-0113972_8	1238184.CM001792_gene2512	72.0	0.00000000000000811	N/A	N/A
structural_annotation	UHGV-0113972_8	PF05657,NF040576,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0113972_9	phrog_5	40.7	0.000000000046	tail completion or Neck1 protein	connector
UniRef90	UHGV-0113972_9	UniRef90_A0A174CK72	100.0	3.48e-24	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0113972_9	1195236.CTER_5108	86.7	9.39e-20	Phage protein, HK97 gp10 family	N/A
structural_annotation	UHGV-0113972_9	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0113972_10	phrog_1951	48.7	0.00000000000014	head-tail adaptor	connector
eggNOG-mapper	UHGV-0113972_10	457396.CSBG_01051	53.9	0.0000000567	head-tail adaptor	N/A
Pfam	UHGV-0113972_10	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
COG	UHGV-0113972_10	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
PHROG	UHGV-0113972_11	phrog_40	40.8	0.000000000034	head-tail adaptor Ad1	connector
UniRef90	UHGV-0113972_11	UniRef90_UPI0006544DF9	53.5	0.000000237	head-tail connector protein	N/A
eggNOG-mapper	UHGV-0113972_11	1274524.BSONL12_06143	48.1	0.000008	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0113972_11	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0113972_11	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0113972_11	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0113972_12	phrog_10	161.6	0	major head protein	head and packaging
UniRef90	UHGV-0113972_12	UniRef90_UPI000C7BECD8	315.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0113972_12	1414720.CBYM010000002_gene572	240.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0113972_12	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0113972_12	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0113972_12	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0113972_12	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0113972_13	phrog_16951	253.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0113972_13	246199.CUS_7602	192.0	0	N/A	N/A
structural_annotation	UHGV-0113972_13	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0113972_14	phrog_12	273.0	0	portal protein	head and packaging
UniRef90	UHGV-0113972_14	UniRef90_UPI001C11FE4E	490.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0113972_14	634956.Geoth_0787	430.0	0	Phage portal protein	N/A
Pfam	UHGV-0113972_14	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0113972_14	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0113972_14	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0113972_14	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0113972_15	phrog_9	330.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0113972_15	UniRef90_UPI000C7CE66A	719.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0113972_15	742738.HMPREF9460_04067	650.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0113972_15	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0113972_15	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0113972_15	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0113972_15	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0113972_16	phrog_83	84.9	1e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0113972_16	UniRef90_UPI00067FA7FA	134.0	4.38e-37	phage terminase small subunit P27 family	N/A
eggNOG-mapper	UHGV-0113972_16	536232.CLM_2059	132.0	3.62e-37	Phage terminase, small subunit	N/A
Pfam	UHGV-0113972_16	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-0113972_16	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
COG	UHGV-0113972_16	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0113972_16	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0113972_17	K07451	48.7	0.00000000000015	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0113972_17	phrog_144	107.0	1.5e-31	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0113972_17	UniRef90_UPI0006D7C695	94.4	3.45e-22	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0113972_17	1508644.SFBmNL_01550	88.2	9.02e-21	HNH endonuclease	N/A
Pfam	UHGV-0113972_17	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0113972_17	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0113972_17	PF05766	N/A	N/A	N/A	N/A
PHROG	UHGV-0113972_18	phrog_36	41.3	0.000000000026	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0113972_18	PF07374,MF_00674,NF008895,COG1342	N/A	N/A	N/A	N/A
Pfam	UHGV-0113972_19	PF11781	N/A	N/A	Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7	zf-RRN7
PHROG	UHGV-0113972_22	phrog_3584	131.6	5e-39	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0113972_22	537013.CLOSTMETH_02141	79.3	0.00000000000000229	N/A	N/A
structural_annotation	UHGV-0113972_22	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-0113972_23	phrog_24518	45.7	0.00000000000094	N/A	unknown function
eggNOG-mapper	UHGV-0113972_23	693746.OBV_25370	82.8	3.53e-17	N/A	N/A
eggNOG-mapper	UHGV-0113972_24	1235790.C805_00069	64.7	0.00000000000181	Restriction alleviation protein Lar	N/A
Pfam	UHGV-0113972_24	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
PHROG	UHGV-0113972_27	phrog_19812	40.0	0.000000000071	N/A	unknown function
structural_annotation	UHGV-0113972_27	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-0113972_31	phrog_15609	144.5	7.20267e-43	N/A	unknown function
UniRef90	UHGV-0113972_31	UniRef90_A0A7G9WGA3	59.7	0.00000195	N/A	N/A
eggNOG-mapper	UHGV-0113972_31	1514668.JOOA01000001_gene225	70.5	0.0000000000808	N/A	N/A
Pfam	UHGV-0113972_31	PF11300	N/A	N/A	N/A	DUF3102
structural_annotation	UHGV-0113972_31	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-0113972_32	phrog_8470	320.0	0	N/A	unknown function
UniRef90	UHGV-0113972_32	UniRef90_UPI001C1DCAAD	204.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0113972_32	649747.HMPREF0083_05326	189.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0113972_32	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0113972_32	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0113972_33	phrog_7445	58.9	1e-16	N/A	unknown function
UniRef90	UHGV-0113972_33	UniRef90_UPI001B3C69A2	73.2	0.0000000000000178	Cas9 inhibitor AcrIIA9 family protein	N/A
Pfam	UHGV-0113972_33	PF14058	N/A	N/A	PcfK-like protein	PcfK
structural_annotation	UHGV-0113972_33	PF14058	N/A	N/A	N/A	N/A
PHROG	UHGV-0113972_34	phrog_824	134.3	4.2e-40	N/A	unknown function
UniRef90	UHGV-0113972_34	UniRef90_A0A3D5TLJ2	317.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0113972_34	1235792.C808_00075	135.0	8.58e-37	VRR_NUC	N/A
Pfam	UHGV-0113972_34	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0113972_34	PF08774,COG1996	N/A	N/A	N/A	N/A
PHROG	UHGV-0113972_38	phrog_22040	42.0	0.000000000013	N/A	unknown function
structural_annotation	UHGV-0113972_38	PF07073,COG4568	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0113972_39	665950.HMPREF1025_02540	65.5	0.00000000037	N/A	N/A
Pfam	UHGV-0113972_39	PF04448	N/A	N/A	N/A	DUF551
KOfam	UHGV-0113972_41	K01449	58.5	6.9e-17	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0113972_41	phrog_18750	148.1	6.16571e-44	N/A	unknown function
UniRef90	UHGV-0113972_41	UniRef90_A0A3D5TM41	248.0	0	Hydrolase_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0113972_41	1203606.HMPREF1526_01876	142.0	4.57e-40	Cell wall hydrolase	N/A
Pfam	UHGV-0113972_41	PF07486	N/A	N/A	Cell Wall Hydrolase	Hydrolase_2
COG	UHGV-0113972_41	COG3773	N/A	N/A	Cell wall hydrolase CwlJ, involved in spore germination	N/A
structural_annotation	UHGV-0113972_41	PF07486,TIGR02869,COG3773	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0113972_43	cluster_173058	45.8	0.000000000199	NA	N/A
PHROG	UHGV-0113972_44	phrog_1305	153.1	1.4013e-45	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0113972_44	UniRef90_A0A373SN33	169.0	0	N/A	N/A
eggNOG-mapper	UHGV-0113972_44	445974.CLORAM_02962	152.0	6.74025e-43	N/A	N/A
Pfam	UHGV-0113972_44	PF13643	N/A	N/A	N/A	DUF4145
structural_annotation	UHGV-0113972_44	PF06573	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0113972_45	1232453.BAIF02000057_gene1127	47.0	0.00000258	N/A	N/A
PHROG	UHGV-0113972_46	phrog_6058	44.9	0.0000000000014	N/A	unknown function
eggNOG-mapper	UHGV-0113972_46	693746.OBV_19810	52.0	0.000000309	N/A	N/A
UniRef90	UHGV-0113972_47	UniRef90_A0A316R8G0	52.0	0.000000396	HTH cro/C1-type domain-containing protein	N/A
PHROG	UHGV-0113972_48	phrog_8	43.3	0.0000000000079	transcriptional regulator	transcription regulation
UniRef90	UHGV-0113972_48	UniRef90_A0A316RBI4	98.6	3.13e-24	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0113972_48	1297617.JPJD01000059_gene2644	50.8	0.00000358	addiction module antidote protein HigA	N/A
COG	UHGV-0113972_48	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-0113972_48	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0113972_49	phrog_87	67.0	2.3e-19	metallo-protease	other
UniRef90	UHGV-0113972_49	UniRef90_R6EG79	117.0	4.64e-32	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0113972_49	428125.CLOLEP_02739	107.0	1.47e-28	N/A	N/A
Pfam	UHGV-0113972_49	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0113972_49	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
KOfam	UHGV-0113972_51	K14059	143.8	2.40042e-42	int; integrase	N/A
PHROG	UHGV-0113972_51	phrog_1	181.3	0	integrase	integration and excision
UniRef90	UHGV-0113972_51	UniRef90_A0A7K4BXA9	278.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0113972_51	693746.OBV_19730	240.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0113972_51	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0113972_51	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0113972_51	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0113972_51	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A