UHGV-0114813 (vOTU-171179)

Viral Genome: UHGV-0114813

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0114813
vOTU ID	vOTU-171179
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_289529
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	83.95 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9818
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.72
Jumbo phage	No

Genome content
Genome length (bp)	35,434
GC content	53.00%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	65
CDS density	91%
Average CDS length (bps)	496.25
Total tRNA genes	5
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 83.95)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0114813_2	phrog_885	67.2	2e-19	major tail protein	tail
eggNOG-mapper	UHGV-0114813_2	1111121.HMPREF1247_0789	149.0	9.13647e-43	N/A	N/A
structural_annotation	UHGV-0114813_2	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
UniRef90	UHGV-0114813_3	UniRef90_A0A415JI88	63.9	0.000000000138	N/A	N/A
structural_annotation	UHGV-0114813_3	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0114813_4	phrog_17977	42.2	0.000000000011	N/A	unknown function
UniRef90	UHGV-0114813_4	UniRef90_A0A844DHJ8	118.0	6.59e-32	Phage head closure protein	N/A
structural_annotation	UHGV-0114813_4	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0114813_6	phrog_544	139.9	1.70006e-41	major head protein	head and packaging
UniRef90	UHGV-0114813_6	UniRef90_R0BKA1	437.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0114813_6	476272.RUMHYD_01776	322.0	0	N/A	N/A
structural_annotation	UHGV-0114813_6	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0114813_7	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0114813_9	phrog_5	46.4	0.000000000001	tail completion or Neck1 protein	connector
UniRef90	UHGV-0114813_9	UniRef90_A0A6N7TNP6	239.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0114813_9	929506.CbC4_1219	87.0	4e-20	N/A	N/A
structural_annotation	UHGV-0114813_9	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0114813_11	phrog_2468	81.5	7.6e-24	head morphogenesis	head and packaging
UniRef90	UHGV-0114813_11	UniRef90_A0A6N7TLR7	630.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0114813_11	1504822.CCNO01000013_gene286	108.0	2.58e-23	cell adhesion	N/A
Pfam	UHGV-0114813_11	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0114813_11	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0114813_11	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0114813_13	phrog_64	123.9	6.1e-37	portal protein	head and packaging
UniRef90	UHGV-0114813_13	UniRef90_A0A6N7TNT3	888.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0114813_13	642492.Clole_2764	81.6	0.0000000000000961	phage portal protein, SPP1	N/A
Pfam	UHGV-0114813_13	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0114813_13	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0114813_14	K06909	145.0	7.00649e-43	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0114813_14	phrog_10250	179.2	0	N/A	unknown function
UniRef90	UHGV-0114813_14	UniRef90_A0A844D8I4	838.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0114813_14	411490.ANACAC_00783	483.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0114813_14	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0114813_14	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0114813_14	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0114813_14	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0114813_14	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0114813_15	UniRef90_UPI0018CC2891	115.0	6.13e-30	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0114813_15	1235790.C805_00037	111.0	2.71e-29	N/A	N/A
structural_annotation	UHGV-0114813_15	PF04218	N/A	N/A	N/A	N/A
KOfam	UHGV-0114813_16	K06223	49.4	0.000000000000011	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0114813_16	phrog_56	94.2	7.4e-28	DNA methyltransferase	other
UniRef90	UHGV-0114813_16	UniRef90_UPI001C01192B	526.0	0	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-0114813_16	1236504.HMPREF2132_01695	198.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-0114813_16	MTase_II_00075	119.3	3.8e-35	Type II methyltransferase	RM
Pfam	UHGV-0114813_16	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
structural_annotation	UHGV-0114813_16	PF02086,NF008152,COG0338	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0114813_18	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0114813_20	K01160	59.6	1e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0114813_20	phrog_34	61.4	2e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0114813_20	UniRef90_A0A6N7TND6	224.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0114813_20	875454.BAEW01000002_gene491	136.0	8.29e-40	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0114813_20	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0114813_20	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0114813_20	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0114813_24	PF01775,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0114813_25	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0114813_26	K02086	62.0	6.2e-18	dnaD; DNA replication protein	N/A
PHROG	UHGV-0114813_26	phrog_186	71.7	1.2e-20	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0114813_26	UniRef90_A0A6N7TLH4	429.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0114813_26	877411.JMMA01000002_gene2052	63.9	0.00000000418	N/A	N/A
Pfam	UHGV-0114813_26	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0114813_26	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0114813_26	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-0114813_26	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
KOfam	UHGV-0114813_27	K03111	131.5	1e-38	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0114813_27	phrog_44	140.6	9.99967e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0114813_27	UniRef90_D4K451	200.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0114813_27	718252.FP2_06770	200.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0114813_27	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0114813_27	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0114813_27	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0114813_27	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0114813_27	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0114813_28	phrog_561	106.3	3.1e-31	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0114813_28	UniRef90_UPI0011C8A287	148.0	2.48002e-41	recombinase RecT	N/A
eggNOG-mapper	UHGV-0114813_28	33035.JPJF01000071_gene4462	146.0	4.96004e-41	N/A	N/A
structural_annotation	UHGV-0114813_28	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0114813_30	PF14120	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0114813_31	PF12270,NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0114813_32	PF10743,NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-0114813_34	phrog_27197	91.9	3.9e-27	N/A	unknown function
eggNOG-mapper	UHGV-0114813_34	394503.Ccel_3068	78.6	5.28e-16	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0114813_34	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
PHROG	UHGV-0114813_35	phrog_4433	71.2	1.7e-20	N/A	unknown function
eggNOG-mapper	UHGV-0114813_35	33035.JPJF01000122_gene2458	66.6	0.00000000000253	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0114813_35	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
KOfam	UHGV-0114813_39	K07741	138.5	1.10001e-40	antB; anti-repressor protein	N/A
PHROG	UHGV-0114813_39	phrog_63	118.3	8.5e-35	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0114813_39	UniRef90_A0A6N7TLD1	285.0	0	Phage antirepressor Ant	N/A
eggNOG-mapper	UHGV-0114813_39	641112.ACOK01000119_gene1439	205.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-0114813_39	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0114813_39	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0114813_39	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0114813_39	PF03374,PF08346,TIGR02681,COG3561,COG3645	N/A	N/A	N/A	N/A
PHROG	UHGV-0114813_40	phrog_8	41.0	0.000000000044	transcriptional regulator	transcription regulation
UniRef90	UHGV-0114813_40	UniRef90_UPI001C009F10	114.0	3.92e-32	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0114813_40	699218.HMPREF0889_0208	50.4	0.000000509	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0114813_40	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0114813_40	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0114813_40	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0114813_41	phrog_8	55.1	0.0000000000000018	transcriptional regulator	transcription regulation
UniRef90	UHGV-0114813_41	UniRef90_UPI001C020D87	77.4	6.31e-16	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0114813_41	665950.HMPREF1025_02562	57.4	0.00000000699	TRANSCRIPTIONal	N/A
Pfam	UHGV-0114813_41	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0114813_41	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0114813_41	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0114813_42	PF09202,MF_01819,NF041230,COG1321	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0114813_45	641112.ACOK01000103_gene519	58.5	0.000000062	N/A	N/A
UniRef90	UHGV-0114813_46	UniRef90_A0A3S9H8P5	132.0	1.17e-33	SAP domain-containing protein	N/A
eggNOG-mapper	UHGV-0114813_46	1280696.ATVY01000034_gene3237	111.0	1.95e-26	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	N/A
Pfam	UHGV-0114813_46	PF08461	N/A	N/A	Ribonuclease R winged-helix domain	HTH_12
UniRef90	UHGV-0114813_49	UniRef90_A0A6N7TLT0	385.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0114813_49	266265.Bxe_A3948	54.3	0.000000178	Helix-turn-helix domain	N/A
Pfam	UHGV-0114813_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0114813_49	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0114813_49	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0114813_50	K14059	139.3	4.60004e-41	int; integrase	N/A
PHROG	UHGV-0114813_50	phrog_1	165.4	0	integrase	integration and excision
UniRef90	UHGV-0114813_50	UniRef90_A0A6N7TNQ4	734.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0114813_50	411471.SUBVAR_05137	259.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0114813_50	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0114813_50	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0114813_50	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0114813_52	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0114813_53	phrog_20016	205.4	0	N/A	unknown function
UniRef90	UHGV-0114813_53	UniRef90_A0A285PT46	200.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0114813_53	1226322.HMPREF1545_00077	180.0	0	N/A	N/A
structural_annotation	UHGV-0114813_53	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0114813_55	phrog_16490	149.2	2.24208e-44	N/A	unknown function
eggNOG-mapper	UHGV-0114813_55	1408437.JNJN01000043_gene803	141.0	2.38e-38	N/A	N/A
PHROG	UHGV-0114813_56	phrog_22984	80.2	1.6e-23	N/A	unknown function
PHROG	UHGV-0114813_57	phrog_21718	118.1	6.5e-35	N/A	unknown function
eggNOG-mapper	UHGV-0114813_57	397290.C810_05210	99.4	2.7e-24	N/A	N/A
PHROG	UHGV-0114813_58	phrog_3754	87.0	2e-25	N/A	unknown function
eggNOG-mapper	UHGV-0114813_58	1235790.C805_00054	107.0	1.5e-28	N/A	N/A
PHROG	UHGV-0114813_60	phrog_918	99.1	2.2e-29	N/A	unknown function
UniRef90	UHGV-0114813_60	UniRef90_UPI000EC62F11	182.0	0	N/A	N/A
eggNOG-mapper	UHGV-0114813_60	411902.CLOBOL_05677	138.0	9.58068e-42	N/A	N/A
Pfam	UHGV-0114813_60	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0114813_60	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0114813_61	phrog_15303	76.4	3.4e-22	N/A	unknown function
KOfam	UHGV-0114813_63	K07273	155.5	0	acm; lysozyme	N/A
PHROG	UHGV-0114813_63	phrog_291	110.2	2.2e-32	endolysin	lysis
UniRef90	UHGV-0114813_63	UniRef90_A0A564U0D3	385.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0114813_63	718252.FP2_04890	231.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0114813_63	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0114813_63	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0114813_63	PF01183,TIGR04053,COG3757	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0114813_64	PF14582,MF_00905,NF008359,COG2129	N/A	N/A	N/A	N/A
PHROG	UHGV-0114813_65	phrog_3558	187.6	0	tail protein	tail
UniRef90	UHGV-0114813_65	UniRef90_A0A8B3ALT8	132.0	3.76e-29	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0114813_65	411460.RUMTOR_00484	127.0	2.84e-28	Prophage endopeptidase tail	N/A
Pfam	UHGV-0114813_65	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0114813_65	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0114813_65	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A