UHGV-0116385 (vOTU-007786)

Viral Genome: UHGV-0116385

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0116385
vOTU ID	vOTU-007786
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_306371
Associated BioSample	SAMEA103958132
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.19 (High-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9748
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.16
Jumbo phage	No

Genome content
Genome length (bp)	35,315
GC content	55.33%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	50
CDS density	95%
Average CDS length (bps)	671.52
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 98.19)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0116385_1	phrog_37799	62.1	3.3e-18	N/A	unknown function
UniRef90	UHGV-0116385_1	UniRef90_R6NA79	138.0	2.85e-38	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-0116385_1	272563.CD630_06610	127.0	1.9e-34	Bacteriophage holin family	N/A
Pfam	UHGV-0116385_1	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0116385_1	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0116385_1	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
KOfam	UHGV-0116385_2	K07273	136.4	3e-40	acm; lysozyme	N/A
PHROG	UHGV-0116385_2	phrog_291	118.8	6.2e-35	endolysin	lysis
UniRef90	UHGV-0116385_2	UniRef90_UPI00195E5E78	192.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0116385_2	411471.SUBVAR_06927	188.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0116385_2	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0116385_2	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0116385_2	PF01183,MF_02227,NF002576,COG3757	N/A	N/A	N/A	N/A
KOfam	UHGV-0116385_5	K00986	57.2	2.3e-16	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0116385_5	phrog_1423	115.3	6.1e-34	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0116385_5	UniRef90_A0A173WUT9	416.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
eggNOG-mapper	UHGV-0116385_5	657322.FPR_27160	248.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
COG	UHGV-0116385_5	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0116385_5	PF00078,MF_04065,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0116385_6	phrog_17147	429.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0116385_6	411459.RUMOBE_01720	525.0	0	N/A	N/A
PHROG	UHGV-0116385_8	phrog_18444	79.9	2e-23	N/A	unknown function
UniRef90	UHGV-0116385_8	UniRef90_UPI00156E9A45	56.6	0.00000000292	peptide chain release factor 2	N/A
eggNOG-mapper	UHGV-0116385_8	931276.Cspa_c07570	54.7	0.00000000263	N/A	N/A
PHROG	UHGV-0116385_9	phrog_1067	406.2	0	minor head protein	head and packaging
eggNOG-mapper	UHGV-0116385_9	1160721.RBI_I01574	380.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0116385_9	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0116385_9	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0116385_9	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0116385_9	PF14594,PF00629,PF03424,TIGR01665,NF033675,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0116385_10	phrog_33	79.2	9.8e-23	distal tail protein Dit	tail
UniRef90	UHGV-0116385_10	UniRef90_A0A1C5W6B6	171.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0116385_10	536233.CLO_0897	92.4	5.79e-20	tail component	N/A
COG	UHGV-0116385_10	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0116385_10	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0116385_11	phrog_1272	339.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0116385_11	UniRef90_E7GJW0	443.0	0	TMP repeat-containing protein	N/A
eggNOG-mapper	UHGV-0116385_11	742740.HMPREF9474_01203	443.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0116385_11	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0116385_11	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0116385_11	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0116385_12	1415774.U728_1245	66.2	0.000000000000252	N/A	N/A
PHROG	UHGV-0116385_13	phrog_29863	89.6	2.8e-26	N/A	unknown function
eggNOG-mapper	UHGV-0116385_13	665956.HMPREF1032_00110	87.4	3.51e-21	N/A	N/A
structural_annotation	UHGV-0116385_13	PF17388	N/A	N/A	N/A	N/A
PHROG	UHGV-0116385_14	phrog_2175	76.9	2.9e-22	protein with Ig domain	other
UniRef90	UHGV-0116385_14	UniRef90_A0A644VRS9	164.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0116385_14	665956.HMPREF1032_00111	187.0	0	N/A	N/A
structural_annotation	UHGV-0116385_14	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0116385_16	phrog_5	43.4	0.00000000001	tail completion or Neck1 protein	connector
UniRef90	UHGV-0116385_16	UniRef90_UPI0019D0A5EF	69.3	0.00000000000091	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0116385_16	1226322.HMPREF1545_00119	64.3	0.0000000000155	N/A	N/A
Pfam	UHGV-0116385_16	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0116385_16	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0116385_17	phrog_19734	71.1	1.5e-20	N/A	unknown function
UniRef90	UHGV-0116385_17	UniRef90_UPI00057FE645	61.2	0.000000000918	phage head closure protein	N/A
eggNOG-mapper	UHGV-0116385_17	1235798.C817_02576	62.4	0.0000000000661	N/A	N/A
structural_annotation	UHGV-0116385_17	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0116385_19	UniRef90_UPI001D825F25	110.0	2.19e-26	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0116385_19	665956.HMPREF1032_00116	165.0	0	Phage capsid family	N/A
COG	UHGV-0116385_19	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
PHROG	UHGV-0116385_20	phrog_10	70.2	3.8e-20	major head protein	head and packaging
UniRef90	UHGV-0116385_20	UniRef90_A0A1T4YDE5	161.0	2.52234e-44	Phage major capsid protein, HK97 family	N/A
eggNOG-mapper	UHGV-0116385_20	665956.HMPREF1032_00116	166.0	0	Phage capsid family	N/A
Pfam	UHGV-0116385_20	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0116385_20	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0116385_20	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
KOfam	UHGV-0116385_21	K01358	130.0	2.7e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0116385_21	phrog_94	194.5	0	head maturation protease	head and packaging
UniRef90	UHGV-0116385_21	UniRef90_A0A8F4L7Y5	177.0	0	Peptidase S14	N/A
eggNOG-mapper	UHGV-0116385_21	86416.Clopa_0340	176.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0116385_21	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0116385_21	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0116385_21	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0116385_22	phrog_12	108.1	4.1e-32	portal protein	head and packaging
UniRef90	UHGV-0116385_22	UniRef90_A0A7G8TDY8	293.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0116385_22	665956.HMPREF1032_00118	271.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0116385_22	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0116385_22	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0116385_22	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0116385_22	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0116385_23	phrog_9	259.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0116385_23	UniRef90_UPI001C46A542	633.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0116385_23	665956.HMPREF1032_00123	619.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0116385_23	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0116385_23	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0116385_23	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0116385_23	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0116385_24	phrog_5110	71.1	1.3e-20	terminase small subunit	head and packaging
UniRef90	UHGV-0116385_24	UniRef90_A0A4U7JDP0	101.0	1.01e-25	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0116385_24	665956.HMPREF1032_00124	105.0	3.62e-28	N/A	N/A
Pfam	UHGV-0116385_24	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0116385_24	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0116385_25	K07451	46.8	0.00000000000057	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0116385_25	phrog_119	59.6	5.6e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0116385_25	UniRef90_A0A7X5HXL9	86.3	1.26e-19	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0116385_25	665956.HMPREF1032_00125	119.0	1.83e-33	HNH nucleases	N/A
COG	UHGV-0116385_25	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0116385_27	phrog_36	72.9	5.6e-21	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0116385_27	411471.SUBVAR_05843	66.2	0.00000000000655	N/A	N/A
structural_annotation	UHGV-0116385_27	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0116385_30	phrog_15609	98.3	8.7e-29	N/A	unknown function
eggNOG-mapper	UHGV-0116385_30	1514668.JOOA01000001_gene225	79.3	0.0000000000000925	N/A	N/A
structural_annotation	UHGV-0116385_30	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-0116385_31	phrog_8470	223.1	0	N/A	unknown function
UniRef90	UHGV-0116385_31	UniRef90_UPI001F1BC041	204.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0116385_31	1007096.BAGW01000031_gene117	159.0	1.5e-39	PcfJ-like protein	N/A
Pfam	UHGV-0116385_31	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0116385_31	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0116385_32	phrog_36399	86.0	5e-25	N/A	unknown function
eggNOG-mapper	UHGV-0116385_32	1226322.HMPREF1545_00099	81.3	2.79e-18	N/A	N/A
PHROG	UHGV-0116385_33	phrog_37023	111.1	8.7e-33	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0116385_33	UniRef90_A0A6S6XBJ8	148.0	5.5071e-43	Tn7_Tnp_TnsA_N domain-containing protein	N/A
Pfam	UHGV-0116385_33	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0116385_33	PF06356,MF_04160,NF002584	N/A	N/A	N/A	N/A
PHROG	UHGV-0116385_34	phrog_3584	201.9	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0116385_34	525254.HMPREF0072_1311	128.0	8.72e-33	N/A	N/A
structural_annotation	UHGV-0116385_34	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0116385_35	K00571	145.5	4.2039e-43	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0116385_35	phrog_67	145.5	2.90069e-43	DNA methyltransferase	other
UniRef90	UHGV-0116385_35	UniRef90_UPI00096AAFE4	224.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0116385_35	585.DR95_1303	127.0	7.78e-31	DNA methylase	N/A
PADLOC	UHGV-0116385_35	MTase_II_00051	132.3	7.8e-39	Type II methyltransferase	RM
Pfam	UHGV-0116385_35	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0116385_35	COG2189	N/A	N/A	Adenine specific DNA methylase Mod	N/A
structural_annotation	UHGV-0116385_35	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0116385_36	phrog_3136	79.3	4.3e-23	N/A	unknown function
eggNOG-mapper	UHGV-0116385_36	394503.Ccel_3165	70.9	0.000000000000135	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0116385_36	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0116385_36	PF08819,MF_00684,NF003443,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-0116385_37	K03698	50.6	0.000000000000035	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	N/A
PHROG	UHGV-0116385_37	phrog_28876	133.0	2.2e-39	metal-dependent phosphohydrolase	other
UniRef90	UHGV-0116385_37	UniRef90_A0A1Y3ZQ65	150.0	3.03942e-42	Hydrolase	N/A
eggNOG-mapper	UHGV-0116385_37	411467.BACCAP_00466	137.0	6.48e-38	metal-dependent phosphohydrolase, HD sub domain	N/A
Pfam	UHGV-0116385_37	PF01966	N/A	N/A	HD domain	HD
COG	UHGV-0116385_37	COG3481	N/A	N/A	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	N/A
structural_annotation	UHGV-0116385_37	PF07514,MF_01427,NF010007,COG3481	N/A	N/A	N/A	N/A
KOfam	UHGV-0116385_47	K22300	61.9	1.5e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0116385_47	phrog_8	54.2	0.0000000000000041	transcriptional regulator	transcription regulation
UniRef90	UHGV-0116385_47	UniRef90_A0A2V2F780	71.2	0.00000000000000515	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0116385_47	669262.COK_1536	55.8	0.00000000102	sequence-specific DNA binding	N/A
Pfam	UHGV-0116385_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0116385_47	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0116385_47	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0116385_48	K22300	63.5	4.6e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0116385_48	phrog_8	63.2	6.6e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0116385_48	UniRef90_UPI000B365C55	68.6	0.0000000000022	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0116385_48	580331.Thit_1413	57.8	0.00000000595	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0116385_48	retron_type_VI_hth_cluster2_1	44.6	0.0000000000028	N/A	Retron
Pfam	UHGV-0116385_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0116385_48	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0116385_48	PF12844,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0116385_49	K02342	153.4	1.4013e-45	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	N/A
PHROG	UHGV-0116385_49	phrog_192	141.5	4.19969e-42	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0116385_49	UniRef90_R8W0C6	171.0	0	Exonuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-0116385_49	1203606.HMPREF1526_00999	171.0	0	EXOIII	N/A
PADLOC	UHGV-0116385_49	cd06127	113.1	4.2e-33	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0116385_49	PF00929	N/A	N/A	Exonuclease	RNase_T
COG	UHGV-0116385_49	COG2176	N/A	N/A	DNA polymerase III, alpha subunit (gram-positive type)	N/A
KOfam	UHGV-0116385_50	K06400	382.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0116385_50	phrog_95	369.4	0	integrase	integration and excision
UniRef90	UHGV-0116385_50	UniRef90_UPI00195D2465	360.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0116385_50	1235835.C814_01150	356.0	0	N/A	N/A
Pfam	UHGV-0116385_50	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0116385_50	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0116385_50	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0116385_50	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0116385_50	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A