UHGV-0116663 (vOTU-164608)

Viral Genome: UHGV-0116663

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0116663
vOTU ID	vOTU-164608
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_290764
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.24 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9766
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.28
Jumbo phage	No

Genome content
Genome length (bp)	28,212
GC content	46.18%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	35
CDS density	92%
Average CDS length (bps)	740.06
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 70.24)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0116663_2	phrog_674	197.2	0	N/A	unknown function
UniRef90	UHGV-0116663_2	UniRef90_A0A416ZL44	452.0	0	N/A	N/A
eggNOG-mapper	UHGV-0116663_2	411460.RUMTOR_02065	203.0	0	N/A	N/A
Pfam	UHGV-0116663_2	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0116663_2	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0116663_3	phrog_155	122.9	2.5e-36	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0116663_3	UniRef90_A0A174S6P0	442.0	0	ERF superfamily	N/A
eggNOG-mapper	UHGV-0116663_3	1304866.K413DRAFT_1196	201.0	0	ERF superfamily	N/A
Pfam	UHGV-0116663_3	PF04404	N/A	N/A	ERF superfamily	ERF
COG	UHGV-0116663_3	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0116663_3	PF04404,TIGR00607,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-0116663_4	K03111	137.2	1.90001e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0116663_4	phrog_44	128.2	7e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0116663_4	UniRef90_A0A174S775	237.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0116663_4	622312.ROSEINA2194_04345	207.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0116663_4	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0116663_4	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0116663_4	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0116663_4	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0116663_4	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0116663_5	phrog_190	119.6	2.5e-35	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0116663_5	UniRef90_A0A416AFS0	139.0	2.58e-40	N/A	N/A
eggNOG-mapper	UHGV-0116663_5	563031.HMPREF0666_01122	106.0	8.53e-28	N/A	N/A
Pfam	UHGV-0116663_5	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0116663_5	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0116663_6	phrog_10469	311.2	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0116663_6	UniRef90_A0A174S3H8	384.0	0	Phage replisome organizer, putative, N-terminal region	N/A
eggNOG-mapper	UHGV-0116663_6	1567013.A0A0A7RTL4_9CAUD	261.0	0	calcium ion binding	N/A
Pfam	UHGV-0116663_6	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0116663_6	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-0116663_6	PF09681,TIGR01714,COG3388	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0116663_8	PF18350,MF_00369,COG2139	N/A	N/A	N/A	N/A
KOfam	UHGV-0116663_9	K00390	42.6	0.000000000008	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0116663_9	phrog_424	51.2	0.000000000000022	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0116663_9	UniRef90_A0A3R6M557	460.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-0116663_9	1235800.C819_02256	432.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
COG	UHGV-0116663_9	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
KOfam	UHGV-0116663_10	K00558	97.6	1.2e-28	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0116663_10	phrog_29443	158.8	0	N/A	unknown function
UniRef90	UHGV-0116663_10	UniRef90_A0A1M5D787	234.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0116663_10	1235798.C817_01880	278.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0116663_10	MTase_II_00020	62.4	1.4e-17	Type II methyltransferase	RM
Pfam	UHGV-0116663_10	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0116663_10	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-0116663_11	K00558	41.1	0.000000000016	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0116663_11	phrog_23072	134.3	0	DNA methyltransferase	other
UniRef90	UHGV-0116663_11	UniRef90_A0A373MWF0	359.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0116663_11	742740.HMPREF9474_04317	314.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0116663_11	DrmMII_00008	42.6	0.000000000000036	DrmMII	DISARM
COG	UHGV-0116663_11	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0116663_12	phrog_36	56.1	8.1e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0116663_12	UniRef90_A0A174SAH0	264.0	0	RNA polymerase sigma factor, sigma-70 family	N/A
eggNOG-mapper	UHGV-0116663_12	1235792.C808_05360	186.0	0	N/A	N/A
structural_annotation	UHGV-0116663_12	PF02996	N/A	N/A	N/A	N/A
KOfam	UHGV-0116663_13	K07474	114.4	2.1e-33	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0116663_13	phrog_51	138.7	3.80004e-41	terminase small subunit	head and packaging
UniRef90	UHGV-0116663_13	UniRef90_A0A417WXA6	206.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0116663_13	641112.ACOK01000073_gene2887	184.0	0	Terminase small subunit	N/A
Pfam	UHGV-0116663_13	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0116663_13	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0116663_13	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0116663_14	K06909	415.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0116663_14	phrog_5653	184.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0116663_14	UniRef90_A0A3A6C4T4	681.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0116663_14	1121947.AUHK01000002_gene929	625.0	0	Terminase RNAseH like domain	N/A
Pfam	UHGV-0116663_14	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0116663_14	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0116663_14	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0116663_14	COG1783	N/A	N/A	Phage terminase large subunit	N/A
HAMAP	UHGV-0116663_14	MF_04145	N/A	N/A	Terminase, large subunit	N/A
structural_annotation	UHGV-0116663_14	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0116663_15	phrog_64	290.5	0	portal protein	head and packaging
UniRef90	UHGV-0116663_15	UniRef90_U2Q3Z0	728.0	0	Putative phage portal protein, SPP1 Gp6	N/A
eggNOG-mapper	UHGV-0116663_15	1256908.HMPREF0373_00485	728.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0116663_15	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0116663_15	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0116663_16	phrog_595	214.5	0	head maturation protease	head and packaging
UniRef90	UHGV-0116663_16	UniRef90_A0A3R6X4N0	663.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0116663_16	1256908.HMPREF0373_00484	470.0	0	Phage Mu protein F like protein	N/A
Pfam	UHGV-0116663_16	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0116663_16	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0116663_16	PF04233,PF15188,PF04002,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0116663_18	phrog_194	89.6	4.4e-26	head scaffolding protein	head and packaging
UniRef90	UHGV-0116663_18	UniRef90_A0A1C5PQA6	263.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0116663_18	1235800.C819_02235	93.6	6.36e-21	Phage minor structural protein GP20	N/A
Pfam	UHGV-0116663_18	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0116663_18	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0116663_19	phrog_212	249.0	0	major head protein	head and packaging
UniRef90	UHGV-0116663_19	UniRef90_UPI00156FB4D6	478.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-0116663_19	1235800.C819_02234	419.0	0	N/A	N/A
structural_annotation	UHGV-0116663_19	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0116663_21	phrog_1236	170.6	0	head protein	head and packaging
eggNOG-mapper	UHGV-0116663_21	1256908.HMPREF0373_00475	189.0	0	N/A	N/A
structural_annotation	UHGV-0116663_21	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-0116663_22	phrog_1059	103.8	9.6e-31	head-tail adaptor	connector
UniRef90	UHGV-0116663_22	UniRef90_A0A416AFR5	154.0	0	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0116663_22	1256908.HMPREF0373_00474	164.0	0	N/A	N/A
structural_annotation	UHGV-0116663_22	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0116663_23	phrog_5	51.5	0.000000000000027	tail completion or Neck1 protein	connector
UniRef90	UHGV-0116663_23	UniRef90_A0A6N7XI87	150.0	4.48416e-44	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0116663_23	1256908.HMPREF0373_00473	197.0	0	N/A	N/A
Pfam	UHGV-0116663_23	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0116663_23	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0116663_24	1256908.HMPREF0373_00472	179.0	0	N/A	N/A
structural_annotation	UHGV-0116663_24	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0116663_25	phrog_885	181.7	0	major tail protein	tail
eggNOG-mapper	UHGV-0116663_25	1256908.HMPREF0373_00471	292.0	0	N/A	N/A
structural_annotation	UHGV-0116663_25	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0116663_26	phrog_1021	57.6	9.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-0116663_26	1256908.HMPREF0373_00470	144.0	2.22947e-42	N/A	N/A
PHROG	UHGV-0116663_28	phrog_991	229.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0116663_28	UniRef90_UPI001DCB5AF7	294.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0116663_28	946235.CAER01000065_gene2435	307.0	0	Phage tail tape measure protein	N/A
Pfam	UHGV-0116663_28	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0116663_28	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0116663_28	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0116663_28	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0116663_29	phrog_33	57.3	4.3e-16	distal tail protein Dit	tail
UniRef90	UHGV-0116663_29	UniRef90_A0A351TQW0	274.0	0	MtfA protein	N/A
eggNOG-mapper	UHGV-0116663_29	411490.ANACAC_00709	186.0	0	phage tail	N/A
COG	UHGV-0116663_29	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0116663_29	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0116663_30	phrog_3558	376.8	0	tail protein	tail
UniRef90	UHGV-0116663_30	UniRef90_UPI001DB21641	316.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0116663_30	1235792.C808_05379	281.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0116663_30	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
Pfam	UHGV-0116663_30	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
NCBIFam	UHGV-0116663_30	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0116663_30	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0116663_30	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0116663_31	phrog_28673	424.2	0	tail protein	tail
eggNOG-mapper	UHGV-0116663_31	1540090.A0A0A0RS40_9CAUD	328.0	0	N/A	N/A
PHROG	UHGV-0116663_33	phrog_1863	66.9	7.5e-20	N/A	unknown function
eggNOG-mapper	UHGV-0116663_33	1226322.HMPREF1545_04027	64.3	0.00000000000132	N/A	N/A
PHROG	UHGV-0116663_34	phrog_1129	85.5	3.6e-25	holin	lysis
UniRef90	UHGV-0116663_34	UniRef90_UPI00051B7422	149.0	7.00649e-45	phage holin family protein	N/A
eggNOG-mapper	UHGV-0116663_34	1232453.BAIF02000013_gene3227	147.0	4.2039e-45	N/A	N/A
Pfam	UHGV-0116663_34	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0116663_34	PF16079	N/A	N/A	N/A	N/A
KOfam	UHGV-0116663_35	K01447	88.4	1.2e-25	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0116663_35	phrog_3088	136.0	3.4e-40	amidase	lysis
UniRef90	UHGV-0116663_35	UniRef90_A0A416ZL02	287.0	0	N-acetylmuramoyl-L-alanine amidase domain-containing protein	N/A
eggNOG-mapper	UHGV-0116663_35	742740.HMPREF9474_01195	213.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-0116663_35	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0116663_35	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A