UHGV-0117240 (vOTU-169759)

Viral Genome: UHGV-0117240

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0117240
vOTU ID	vOTU-169759
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_299327
Associated BioSample	SAMEA103958121
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.41 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.97
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.08
Jumbo phage	No

Genome content
Genome length (bp)	27,665
GC content	55.79%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	40
CDS density	93%
Average CDS length (bps)	640.28
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 79.41)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0117240_1	phrog_6616	82.0	1.6e-24	tail protein	tail
structural_annotation	UHGV-0117240_1	PF13550,PF09931,NF033848,COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0117240_2	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0117240_3	phrog_1535	133.6	0	tail length tape measure protein	tail
UniRef90	UHGV-0117240_3	UniRef90_A0A810PX76	108.0	4.38e-21	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0117240_3	1449050.JNLE01000003_gene3881	134.0	5.43e-30	domain protein	N/A
COG	UHGV-0117240_3	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0117240_4	phrog_706	109.6	2.9e-32	N/A	unknown function
UniRef90	UHGV-0117240_4	UniRef90_UPI00164D7633	176.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0117240_4	693746.OBV_18170	167.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0117240_4	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0117240_4	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0117240_5	phrog_11299	99.9	2.4e-29	N/A	unknown function
eggNOG-mapper	UHGV-0117240_5	1449050.JNLE01000003_gene3883	66.2	0.0000000000104	N/A	N/A
structural_annotation	UHGV-0117240_5	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0117240_6	phrog_3099	88.0	1.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0117240_6	693746.OBV_18150	224.0	0	N/A	N/A
structural_annotation	UHGV-0117240_6	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0117240_7	phrog_3266	63.8	2.4e-18	tail completion	connector
eggNOG-mapper	UHGV-0117240_7	476272.RUMHYD_01781	119.0	3.84e-32	N/A	N/A
structural_annotation	UHGV-0117240_7	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0117240_8	phrog_556	63.7	8.7e-19	minor head protein	head and packaging
UniRef90	UHGV-0117240_8	UniRef90_A0A1H7MNM8	113.0	4.27e-29	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0117240_8	476272.RUMHYD_01780	108.0	2.55e-28	N/A	N/A
Pfam	UHGV-0117240_8	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0117240_8	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0117240_9	phrog_3366	52.4	0.00000000000001	N/A	unknown function
structural_annotation	UHGV-0117240_9	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0117240_10	phrog_541	68.2	1.2e-19	head-tail adaptor	connector
eggNOG-mapper	UHGV-0117240_10	476272.RUMHYD_01778	74.7	0.00000000000000787	N/A	N/A
PHROG	UHGV-0117240_11	phrog_267	52.4	0.0000000000000066	major head protein	head and packaging
eggNOG-mapper	UHGV-0117240_11	1235799.C818_04223	160.0	7.00649e-45	N/A	N/A
structural_annotation	UHGV-0117240_11	PF11651,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0117240_12	phrog_194	42.7	0.00000000001	head scaffolding protein	head and packaging
UniRef90	UHGV-0117240_12	UniRef90_UPI001C0EBA51	127.0	3.38e-33	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0117240_12	1539298.JO41_08210	63.2	0.000000000913	Phage minor structural protein GP20	N/A
Pfam	UHGV-0117240_12	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0117240_12	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0117240_13	phrog_581	247.5	0	minor head protein	head and packaging
UniRef90	UHGV-0117240_13	UniRef90_A0A355KVT5	346.0	0	Phage capsid protein (Fragment)	N/A
eggNOG-mapper	UHGV-0117240_13	476272.RUMHYD_01761	226.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0117240_13	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0117240_13	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0117240_13	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0117240_14	phrog_533	213.0	0	portal protein	head and packaging
UniRef90	UHGV-0117240_14	UniRef90_A0A173TY48	343.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0117240_14	33035.JPJF01000106_gene3135	325.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0117240_14	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0117240_15	phrog_1233	95.2	7.5e-28	N/A	unknown function
eggNOG-mapper	UHGV-0117240_15	1415774.U728_832	93.2	3.72e-23	N/A	N/A
structural_annotation	UHGV-0117240_15	PF13058	N/A	N/A	N/A	N/A
KOfam	UHGV-0117240_16	K06909	397.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0117240_16	phrog_5653	148.6	3.50325e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0117240_16	UniRef90_A0A416S378	633.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0117240_16	33035.JPJF01000106_gene3136	595.0	0	Terminase small subunit	N/A
Pfam	UHGV-0117240_16	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-0117240_16	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0117240_16	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0117240_16	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0117240_16	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0117240_16	PF04466,PF17288,PF03592,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0117240_17	PF10922,MF_00839	N/A	N/A	N/A	N/A
PHROG	UHGV-0117240_18	phrog_36	62.1	1.1e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0117240_18	UniRef90_UPI001C10AB33	123.0	3.24e-33	N/A	N/A
eggNOG-mapper	UHGV-0117240_18	428125.CLOLEP_01806	106.0	3.3e-27	N/A	N/A
Pfam	UHGV-0117240_18	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0117240_18	PF07374,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0117240_19	phrog_5781	69.1	6e-20	N/A	unknown function
UniRef90	UHGV-0117240_19	UniRef90_A0A810Q4L2	110.0	1.63e-28	N/A	N/A
eggNOG-mapper	UHGV-0117240_19	573061.Clocel_3558	75.5	0.00000000000000236	N/A	N/A
Pfam	UHGV-0117240_19	PF14359	N/A	N/A	N/A	DUF4406
COG	UHGV-0117240_19	COG3613	N/A	N/A	Nucleoside 2-deoxyribosyltransferase	N/A
structural_annotation	UHGV-0117240_19	PF14359,MF_03036,TIGR03646,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0117240_20	phrog_1029	227.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0117240_20	1203606.HMPREF1526_01890	375.0	0	N/A	N/A
structural_annotation	UHGV-0117240_20	PF10065,COG5532	N/A	N/A	N/A	N/A
PHROG	UHGV-0117240_21	phrog_997	120.3	1.2e-35	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0117240_21	UniRef90_R6MCS9	110.0	5.44e-29	N/A	N/A
eggNOG-mapper	UHGV-0117240_21	1519439.JPJG01000059_gene1910	176.0	0	N/A	N/A
KOfam	UHGV-0117240_22	K00558	217.6	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0117240_22	phrog_116	254.9	0	DNA methyltransferase	other
UniRef90	UHGV-0117240_22	UniRef90_A0A350THX9	716.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0117240_22	1121334.KB911073_gene1852	607.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0117240_22	MTase_II_00020	91.3	2.4e-29	Type II methyltransferase	RM
Pfam	UHGV-0117240_22	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0117240_22	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0117240_22	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0117240_23	1232449.BAHV02000016_gene1829	134.0	9.76e-39	N/A	N/A
KOfam	UHGV-0117240_24	K03700	87.6	1.7e-25	recU; recombination protein U	N/A
PHROG	UHGV-0117240_24	phrog_843	135.0	2.8e-40	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0117240_24	UniRef90_A0A0J1FTW3	164.0	0	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-0117240_24	537013.CLOSTMETH_01720	151.0	1.58347e-43	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
Pfam	UHGV-0117240_24	PF03838	N/A	N/A	Recombination protein U	RecU
COG	UHGV-0117240_24	COG3331	N/A	N/A	Penicillin-binding protein-related factor A, putative recombinase	N/A
structural_annotation	UHGV-0117240_24	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
PHROG	UHGV-0117240_25	phrog_3584	131.8	5.3e-39	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0117240_25	411470.RUMGNA_02047	140.0	1.92e-37	N/A	N/A
structural_annotation	UHGV-0117240_25	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0117240_28	K06284	113.9	1e-33	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	N/A
PHROG	UHGV-0117240_28	phrog_4681	98.0	3.9e-29	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0117240_28	UniRef90_A0A2N2DP50	108.0	3.5e-29	AbrB family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0117240_28	1120998.AUFC01000033_gene2303	103.0	5.61e-28	TIGRFAM looped-hinge helix DNA binding domain, AbrB family	N/A
Pfam	UHGV-0117240_28	PF04014	N/A	N/A	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
NCBIFam	UHGV-0117240_28	TIGR01439.1	N/A	N/A	transcriptional regulator, AbrB family	N/A
COG	UHGV-0117240_28	COG2002	N/A	N/A	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	N/A
structural_annotation	UHGV-0117240_28	PF15937,TIGR01439,NF004424,COG2002	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0117240_29	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0117240_30	phrog_585	42.7	0.000000000011	N/A	unknown function
Pfam	UHGV-0117240_30	PF10711	N/A	N/A	N/A	DUF2513
PHROG	UHGV-0117240_31	phrog_750	48.0	0.00000000000013	N/A	unknown function
structural_annotation	UHGV-0117240_31	PF13835,NF040858	N/A	N/A	N/A	N/A
KOfam	UHGV-0117240_34	K07729	40.8	0.000000000047	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-0117240_34	UniRef90_UPI0013ECC13D	63.5	0.00000000000758	helix-turn-helix domain-containing protein	N/A
PADLOC	UHGV-0117240_34	retron_type_VI_hth_cluster2_1	41.1	0.000000000053	N/A	Retron
Pfam	UHGV-0117240_34	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0117240_34	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0117240_34	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0117240_35	K22300	60.8	3.1e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0117240_35	phrog_8	50.4	0.000000000000048	transcriptional regulator	transcription regulation
UniRef90	UHGV-0117240_35	UniRef90_UPI000E31F980	89.7	9.38e-21	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0117240_35	1125712.HMPREF1316_2394	63.2	0.000000000202	Peptidase S24-like	N/A
PADLOC	UHGV-0117240_35	retron_type_VI_hth_cluster2_1	40.4	0.000000000069	N/A	Retron
Pfam	UHGV-0117240_35	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0117240_35	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0117240_35	PF13560,MF_00535,NF007257,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0117240_36	phrog_1914	102.9	1.5e-30	N/A	unknown function
UniRef90	UHGV-0117240_36	UniRef90_R6DVV5	241.0	0	Predicted Zn peptidase	N/A
eggNOG-mapper	UHGV-0117240_36	1160721.RBI_I01604	144.0	3.30006e-41	N/A	N/A
Pfam	UHGV-0117240_36	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0117240_36	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0117240_36	PF06114,COG2856	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0117240_37	PF18768,MF_02066,NF011886,COG5010	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0117240_38	PF21227	N/A	N/A	N/A	N/A
PHROG	UHGV-0117240_39	phrog_2158	209.5	0	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0117240_39	UniRef90_A0A1M5ZIM7	291.0	0	Abortive infection bacteriophage resistance protein	N/A
eggNOG-mapper	UHGV-0117240_39	1045858.Bint_2390	254.0	0	Abi-like protein	N/A
PADLOC	UHGV-0117240_39	AbiD	314.6	0	AbiD	Abi
Pfam	UHGV-0117240_39	PF07751	N/A	N/A	Abi-like protein	Abi_2
COG	UHGV-0117240_39	COG4823	N/A	N/A	Abortive infection bacteriophage resistance protein	N/A
structural_annotation	UHGV-0117240_39	PF07751,COG4823	N/A	N/A	N/A	N/A
KOfam	UHGV-0117240_40	K14059	153.0	4.2039e-45	int; integrase	N/A
PHROG	UHGV-0117240_40	phrog_1	150.2	1.68156e-44	integrase	integration and excision
UniRef90	UHGV-0117240_40	UniRef90_A0A2Z4QB94	330.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0117240_40	626523.GCWU000342_00320	96.7	9.04e-20	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0117240_40	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0117240_40	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0117240_40	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A