UHGV-0117371 (vOTU-137511)

Viral Genome: UHGV-0117371

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0117371
vOTU ID	vOTU-137511
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_293603
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.61 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.9507
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	1
viralVerify prediction	Virus
viralVerify score	22.09
Jumbo phage	No

Genome content
Genome length (bp)	35,126
GC content	56.34%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	49
CDS density	89%
Average CDS length (bps)	640.35
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 86.61)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0117371_1	phrog_1535	222.1	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0117371_1	665956.HMPREF1032_03628	178.0	5.19882e-43	domain protein	N/A
COG	UHGV-0117371_1	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0117371_2	phrog_706	117.7	9.5e-35	N/A	unknown function
UniRef90	UHGV-0117371_2	UniRef90_UPI0019576839	207.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0117371_2	1226322.HMPREF1545_00058	164.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0117371_2	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0117371_2	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0117371_3	phrog_11299	92.7	4.2e-27	N/A	unknown function
UniRef90	UHGV-0117371_3	UniRef90_UPI001C03A209	142.0	1.98001e-40	V-type proton ATPase subunit E	N/A
eggNOG-mapper	UHGV-0117371_3	411471.SUBVAR_06935	145.0	4.58995e-41	N/A	N/A
PHROG	UHGV-0117371_4	phrog_3099	154.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0117371_4	411471.SUBVAR_06936	221.0	0	N/A	N/A
structural_annotation	UHGV-0117371_4	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0117371_5	phrog_3266	41.5	0.000000000017	tail completion	connector
eggNOG-mapper	UHGV-0117371_5	693746.OBV_18140	169.0	0	N/A	N/A
structural_annotation	UHGV-0117371_5	PF08873	N/A	N/A	N/A	N/A
PHROG	UHGV-0117371_6	phrog_556	51.5	0.000000000000019	minor head protein	head and packaging
UniRef90	UHGV-0117371_6	UniRef90_UPI001967B4B3	161.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0117371_6	1292035.H476_1011	50.1	0.0000046	Minor capsid protein	N/A
Pfam	UHGV-0117371_6	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0117371_6	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0117371_7	phrog_3366	42.2	0.000000000013	N/A	unknown function
structural_annotation	UHGV-0117371_7	PF20536,MF_01370,TIGR02126	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0117371_8	693746.OBV_18110	107.0	1.68e-28	N/A	N/A
PHROG	UHGV-0117371_10	phrog_422	236.6	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0117371_10	693746.OBV_18090	358.0	0	N/A	N/A
structural_annotation	UHGV-0117371_10	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0117371_11	phrog_194	102.2	6.1e-30	head scaffolding protein	head and packaging
UniRef90	UHGV-0117371_11	UniRef90_A0A4R1QTK7	196.0	0	Minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0117371_11	411471.SUBVAR_06994	249.0	0	Phage minor structural protein GP20	N/A
Pfam	UHGV-0117371_11	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0117371_11	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0117371_14	phrog_581	189.3	0	minor head protein	head and packaging
UniRef90	UHGV-0117371_14	UniRef90_UPI00196795ED	339.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0117371_14	411471.SUBVAR_06995	571.0	0	N/A	N/A
Pfam	UHGV-0117371_14	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0117371_14	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0117371_14	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0117371_15	phrog_533	183.1	0	portal protein	head and packaging
UniRef90	UHGV-0117371_15	UniRef90_D1PRG7	668.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0117371_15	411471.SUBVAR_06996	668.0	0	N/A	N/A
structural_annotation	UHGV-0117371_15	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0117371_18	K06909	381.2	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0117371_18	phrog_3717	149.8	1.4013e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0117371_18	UniRef90_D1PRG9	811.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0117371_18	411471.SUBVAR_06998	811.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0117371_18	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0117371_18	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0117371_18	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0117371_18	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0117371_18	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0117371_19	phrog_24579	43.2	0.0000000000061	terminase small subunit	head and packaging
UniRef90	UHGV-0117371_19	UniRef90_A0A1Y4TKH5	87.8	1.66e-20	HTH_Tnp_1_2 domain-containing protein	N/A
KOfam	UHGV-0117371_21	K05785	52.1	0.0000000000000099	rfaH; transcriptional antiterminator RfaH	N/A
PHROG	UHGV-0117371_21	phrog_6386	77.9	1.2e-22	transcription antiterminator	transcription regulation
UniRef90	UHGV-0117371_21	UniRef90_A0A2V2FE50	306.0	0	Antitermination protein NusG	N/A
eggNOG-mapper	UHGV-0117371_21	411471.SUBVAR_07000	301.0	0	Transcription termination factor nusG	N/A
Pfam	UHGV-0117371_21	PF02357	N/A	N/A	Transcription termination factor nusG	NusG
COG	UHGV-0117371_21	COG0250	N/A	N/A	Transcription termination/antitermination protein NusG	N/A
structural_annotation	UHGV-0117371_21	PF02357,MF_00951,NF033641,COG0250	N/A	N/A	N/A	N/A
PHROG	UHGV-0117371_22	phrog_426	102.6	4.9e-30	terminase small subunit	head and packaging
UniRef90	UHGV-0117371_22	UniRef90_A0A6N8H2N8	304.0	0	N/A	N/A
eggNOG-mapper	UHGV-0117371_22	411471.SUBVAR_07001	325.0	0	N/A	N/A
Pfam	UHGV-0117371_22	PF11985	N/A	N/A	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
structural_annotation	UHGV-0117371_22	PF11985	N/A	N/A	N/A	N/A
PHROG	UHGV-0117371_23	phrog_25462	74.7	1.1e-21	N/A	unknown function
UniRef90	UHGV-0117371_23	UniRef90_A0A2V2FBL8	168.0	0	Type VI secretion protein	N/A
eggNOG-mapper	UHGV-0117371_23	552398.HMPREF0866_03124	90.9	3.02e-22	N/A	N/A
structural_annotation	UHGV-0117371_23	PF01638,MF_01819,NF002926,COG1733	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0117371_24	411471.SUBVAR_07003	167.0	0	N/A	N/A
PHROG	UHGV-0117371_25	phrog_836	60.3	1.7e-17	late transcriptional activator	transcription regulation
UniRef90	UHGV-0117371_25	UniRef90_A0A2V2FI75	139.0	6.67004e-41	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0117371_25	411471.SUBVAR_07004	116.0	1.52e-32	Mor transcription activator	N/A
Pfam	UHGV-0117371_25	PF08765	N/A	N/A	Mor transcription activator family	Mor
COG	UHGV-0117371_25	COG5566	N/A	N/A	Transcriptional regulator, middle operon regulator (Mor) family	N/A
structural_annotation	UHGV-0117371_25	PF08765,COG5566	N/A	N/A	N/A	N/A
PHROG	UHGV-0117371_26	phrog_286	77.5	2.3e-22	N/A	unknown function
UniRef90	UHGV-0117371_26	UniRef90_A0A2V2FEY3	180.0	0	Regulatory protein GemA	N/A
eggNOG-mapper	UHGV-0117371_26	411471.SUBVAR_07005	171.0	0	N/A	N/A
Pfam	UHGV-0117371_26	PF06252	N/A	N/A	Bacteriophage Mu, GemA protein	GemA
structural_annotation	UHGV-0117371_26	PF06252	N/A	N/A	N/A	N/A
PHROG	UHGV-0117371_27	phrog_491	107.8	8.8e-32	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0117371_27	UniRef90_D1PRH7	260.0	0	Putative bacteriophage Mu Gam like protein	N/A
eggNOG-mapper	UHGV-0117371_27	411471.SUBVAR_07006	260.0	0	Bacteriophage Mu Gam like protein	N/A
Pfam	UHGV-0117371_27	PF07352	N/A	N/A	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
COG	UHGV-0117371_27	COG4396	N/A	N/A	Mu-like prophage host-nuclease inhibitor protein Gam	N/A
structural_annotation	UHGV-0117371_27	PF07352,COG4396	N/A	N/A	N/A	N/A
KOfam	UHGV-0117371_30	K07132	116.7	2.3e-34	MuB; ATP-dependent target DNA activator	N/A
PHROG	UHGV-0117371_30	phrog_296	145.6	4.2039e-43	DNA transposition protein	integration and excision
UniRef90	UHGV-0117371_30	UniRef90_A0A2V2F8S2	584.0	0	DNA transposition protein	N/A
eggNOG-mapper	UHGV-0117371_30	411471.SUBVAR_07009	538.0	0	AAA domain	N/A
Pfam	UHGV-0117371_30	PF13401	N/A	N/A	AAA domain	AAA_22
COG	UHGV-0117371_30	COG2842	N/A	N/A	Bacteriophage DNA transposition protein, AAA+ family ATPase	N/A
structural_annotation	UHGV-0117371_30	PF13401,PF09077,PF12844,MF_01407,TIGR03015,TIGR02607,COG2842	N/A	N/A	N/A	N/A
PHROG	UHGV-0117371_31	phrog_310	355.9	0	transposase	integration and excision
UniRef90	UHGV-0117371_31	UniRef90_D1PRI1	1125.0	0	Mu transposase domain protein	N/A
eggNOG-mapper	UHGV-0117371_31	411471.SUBVAR_07010	1125.0	0	Mu transposase, C-terminal	N/A
PADLOC	UHGV-0117371_31	TnsB_0_V-K	57.0	2.9e-16	TnsB_0_V-K	CRISPR-CAS
Pfam	UHGV-0117371_31	PF09039	N/A	N/A	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
Pfam	UHGV-0117371_31	PF09299	N/A	N/A	Mu transposase, C-terminal	Mu-transpos_C
COG	UHGV-0117371_31	COG2801	N/A	N/A	Transposase InsO and inactivated derivatives	N/A
structural_annotation	UHGV-0117371_31	PF02914,PF09039,PF09299,PF21531,NF033594,TIGR01764,COG3316,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0117371_36	K22300	40.8	0.000000000041	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0117371_36	phrog_8	53.7	0.0000000000000046	transcriptional regulator	transcription regulation
UniRef90	UHGV-0117371_36	UniRef90_A0A2V2FBS9	202.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0117371_36	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0117371_36	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0117371_37	K03427	284.6	0	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	N/A
PHROG	UHGV-0117371_37	phrog_2713	194.7	0	N/A	unknown function
UniRef90	UHGV-0117371_37	UniRef90_UPI001958D3E9	1021.0	0	type I restriction-modification system subunit M	N/A
eggNOG-mapper	UHGV-0117371_37	1128427.KB904822_gene67	611.0	0	Type I restriction-modification system methyltransferase subunit	N/A
PADLOC	UHGV-0117371_37	MTase_I_00013	453.0	0	Type I methyltransferase	RM
Pfam	UHGV-0117371_37	PF13588	N/A	N/A	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N_2
Pfam	UHGV-0117371_37	PF02384	N/A	N/A	N-6 DNA Methylase	N6_Mtase
COG	UHGV-0117371_37	COG0286	N/A	N/A	Type I restriction-modification system, DNA methylase subunit	N/A
structural_annotation	UHGV-0117371_37	PF02384,MF_01872,TIGR00497,COG0286	N/A	N/A	N/A	N/A
KOfam	UHGV-0117371_38	K07133	198.0	0	N/A	N/A
UniRef90	UHGV-0117371_38	UniRef90_A0A373KUA3	654.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0117371_38	411467.BACCAP_01285	631.0	0	N/A	N/A
Pfam	UHGV-0117371_38	PF13173	N/A	N/A	AAA domain	AAA_14
Pfam	UHGV-0117371_38	PF13635	N/A	N/A	N/A	DUF4143
COG	UHGV-0117371_38	COG1373	N/A	N/A	Predicted ATPase, AAA+ superfamily	N/A
structural_annotation	UHGV-0117371_38	PF13635,PF13173,MF_01407,NF001626,COG1373	N/A	N/A	N/A	N/A
PHROG	UHGV-0117371_39	phrog_24764	107.6	7e-32	N/A	unknown function
UniRef90	UHGV-0117371_39	UniRef90_UPI001064BF64	105.0	1.65e-27	TnpV protein	N/A
eggNOG-mapper	UHGV-0117371_39	1235793.C809_00404	102.0	1.45e-27	Transposon-encoded protein TnpV	N/A
Pfam	UHGV-0117371_39	PF14198	N/A	N/A	Transposon-encoded protein TnpV	TnpV
KOfam	UHGV-0117371_41	K07505	41.6	0.0000000000047	repA; regulatory protein RepA	N/A
PHROG	UHGV-0117371_41	phrog_6357	70.1	3e-20	N/A	unknown function
UniRef90	UHGV-0117371_41	UniRef90_UPI0019682EEE	297.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0117371_41	877414.ATWA01000005_gene694	602.0	0	AAA domain	N/A
Pfam	UHGV-0117371_41	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0117371_41	COG1066	N/A	N/A	DNA repair protein RadA/Sms, contains AAA+ ATPase domain	N/A
structural_annotation	UHGV-0117371_41	PF03796,PF05848,MF_01498,TIGR00416,NF038268,COG1066	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0117371_43	903814.ELI_2799	56.2	0.00000000995	N/A	N/A
PHROG	UHGV-0117371_44	phrog_26285	124.3	8.1e-37	N/A	unknown function
UniRef90	UHGV-0117371_44	UniRef90_UPI001C110254	573.0	0	relaxase/mobilization nuclease domain-containing protein	N/A
eggNOG-mapper	UHGV-0117371_44	877414.ATWA01000005_gene696	697.0	0	Relaxase/Mobilisation nuclease domain	N/A
Pfam	UHGV-0117371_44	PF03432	N/A	N/A	Relaxase/Mobilisation nuclease domain	Relaxase
COG	UHGV-0117371_44	COG3843	N/A	N/A	Type IV secretory pathway, VirD2 component (relaxase)	N/A
structural_annotation	UHGV-0117371_44	PF03432,NF040665,COG3843	N/A	N/A	N/A	N/A
KOfam	UHGV-0117371_45	K03497	136.3	4.2e-40	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0117371_45	phrog_4715	161.2	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0117371_45	UniRef90_UPI001966FA6B	516.0	0	ParB/RepB/Spo0J family partition protein	N/A
eggNOG-mapper	UHGV-0117371_45	877414.ATWA01000005_gene697	457.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0117371_45	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0117371_45	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0117371_45	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0117371_45	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
UniRef90	UHGV-0117371_47	UniRef90_UPI001D062A63	152.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0117371_47	877414.ATWA01000005_gene698	135.0	7.92e-41	Helix-turn-helix domain	N/A
Pfam	UHGV-0117371_47	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
KOfam	UHGV-0117371_48	K14059	214.1	0	int; integrase	N/A
PHROG	UHGV-0117371_48	phrog_1	162.9	0	integrase	integration and excision
UniRef90	UHGV-0117371_48	UniRef90_A0A417N504	615.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0117371_48	877414.ATWA01000005_gene699	632.0	0	Phage integrase family	N/A
Pfam	UHGV-0117371_48	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0117371_48	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0117371_48	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0117371_48	PF00589,MF_01808,TIGR02225,NF041908,COG4974,COG3422	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0117371_49	411471.SUBVAR_04507	100.0	3.59e-24	Resolvase, N terminal domain	N/A
COG	UHGV-0117371_49	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A