UHGV-0117477 (vOTU-034549)

Viral Genome: UHGV-0117477

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0117477
vOTU ID	vOTU-034549
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_291698
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	68.62 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9797
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.58
Jumbo phage	No

Genome content
Genome length (bp)	39,589
GC content	47.48%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	63
CDS density	85%
Average CDS length (bps)	536.24
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 68.62)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0117477_1	phrog_155	46.7	0.00000000000066	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0117477_1	UniRef90_UPI00130EB09C	131.0	2.54e-36	ERF family protein	N/A
eggNOG-mapper	UHGV-0117477_1	748224.HMPREF9436_03360	127.0	2.34e-35	ERF superfamily	N/A
Pfam	UHGV-0117477_1	PF04404	N/A	N/A	ERF superfamily	ERF
KOfam	UHGV-0117477_2	K03111	115.2	1e-33	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0117477_2	phrog_44	126.2	2.8e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0117477_2	UniRef90_A0A6N7TNV3	148.0	3.33509e-43	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0117477_2	748224.HMPREF9436_03359	145.0	1.3004e-42	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0117477_2	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0117477_2	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0117477_2	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0117477_2	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0117477_2	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0117477_3	phrog_4572	133.9	5.19999e-40	N/A	unknown function
eggNOG-mapper	UHGV-0117477_3	397288.C806_00091	95.9	4.63e-23	N/A	N/A
PHROG	UHGV-0117477_5	phrog_843	62.5	4.9e-18	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0117477_5	UniRef90_UPI001159D907	114.0	6.27e-29	Holliday junction resolvase RecU	N/A
eggNOG-mapper	UHGV-0117477_5	929506.CbC4_1203	107.0	6.67e-27	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	N/A
structural_annotation	UHGV-0117477_5	PF03838,MF_00130,NF002581,COG3331	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0117477_9	MF_00085,TIGR00037,COG0231	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0117477_12	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0117477_18	K22300	49.3	0.0000000000001	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0117477_18	phrog_11947	49.5	0.000000000000035	N/A	unknown function
Pfam	UHGV-0117477_18	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0117477_18	PF01381,MF_00535,TIGR03070,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0117477_23	phrog_678	41.5	0.000000000025	replication initiation O-like	DNA, RNA and nucleotide metabolism
Pfam	UHGV-0117477_23	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0117477_23	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0117477_24	K02314	213.0	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0117477_24	phrog_19	225.2	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0117477_24	UniRef90_A0A564SBR1	428.0	0	Replicative DNA helicase	N/A
eggNOG-mapper	UHGV-0117477_24	1203606.HMPREF1526_01325	161.0	3.62936e-42	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0117477_24	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0117477_24	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0117477_24	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0117477_26	phrog_186	49.9	0.000000000000059	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0117477_26	UniRef90_A0A1Y3SW45	91.3	2.69e-19	RepA_N domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0117477_26	411468.CLOSCI_02792	90.9	4.77e-19	Replication initiator protein A (RepA) N-terminus	N/A
Pfam	UHGV-0117477_26	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0117477_26	COG1349	N/A	N/A	DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family	N/A
structural_annotation	UHGV-0117477_26	PF06970,MF_01177,NF040642,COG5625	N/A	N/A	N/A	N/A
COG	UHGV-0117477_29	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
PHROG	UHGV-0117477_32	phrog_14275	76.7	2.5e-22	N/A	unknown function
eggNOG-mapper	UHGV-0117477_32	1280676.AUJO01000001_gene2313	70.5	0.0000000000169	N/A	N/A
Pfam	UHGV-0117477_32	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
structural_annotation	UHGV-0117477_32	PF03843,MF_00984,TIGR00752,COG3065	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0117477_33	PF11906,PF09624,MF_00791,NF038353,NF033903,COG5633	N/A	N/A	N/A	N/A
KOfam	UHGV-0117477_35	K07741	75.5	1.1e-21	antB; anti-repressor protein	N/A
PHROG	UHGV-0117477_35	phrog_373	125.5	5.3e-37	anti-repressor	transcription regulation
UniRef90	UHGV-0117477_35	UniRef90_UPI001C039A6C	174.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0117477_35	416870.llmg_0797	144.0	1.12e-39	ORF6C domain	N/A
Pfam	UHGV-0117477_35	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0117477_35	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0117477_35	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0117477_35	PF10552,PF08346,TIGR02681,COG3561	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0117477_36	PF19807,NF041793,COG4877	N/A	N/A	N/A	N/A
UniRef90	UHGV-0117477_38	UniRef90_A0A417DZ16	52.4	0.000000241	HTH cro/C1-type domain-containing protein	N/A
structural_annotation	UHGV-0117477_38	PF20075,TIGR02612,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0117477_39	K14060	95.7	6.6e-28	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0117477_39	phrog_125	130.2	1.5e-38	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0117477_39	UniRef90_UPI001A9B5A42	244.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0117477_39	1443122.Z958_05795	158.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0117477_39	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-0117477_39	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0117477_39	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0117477_40	NF009949	N/A	N/A	N/A	N/A
KOfam	UHGV-0117477_41	K14415	322.9	0	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	N/A
PHROG	UHGV-0117477_41	phrog_1075	436.5	0	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0117477_41	UniRef90_UPI00067F3ABF	475.0	0	RNA-splicing ligase RtcB	N/A
eggNOG-mapper	UHGV-0117477_41	1211844.CBLM010000044_gene358	474.0	0	tRNA-splicing ligase RtcB	N/A
Pfam	UHGV-0117477_41	PF01139	N/A	N/A	tRNA-splicing ligase RtcB	RtcB
COG	UHGV-0117477_41	COG1690	N/A	N/A	RNA-splicing ligase RtcB, repairs tRNA damage	N/A
structural_annotation	UHGV-0117477_41	PF01139,MF_03144,NF007153,COG1690	N/A	N/A	N/A	N/A
PHROG	UHGV-0117477_42	phrog_38	177.0	0	terminase large subunit	head and packaging
UniRef90	UHGV-0117477_42	UniRef90_UPI000419A6BC	429.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0117477_42	1121866.AUGK01000003_gene1428	429.0	0	chromosome segregation	N/A
COG	UHGV-0117477_42	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0117477_42	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0117477_44	phrog_64	148.7	3.08286e-44	portal protein	head and packaging
UniRef90	UHGV-0117477_44	UniRef90_A0A371ILT4	332.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0117477_44	1121866.AUGK01000003_gene1429	282.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0117477_44	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0117477_44	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0117477_48	phrog_29	171.5	0	major head protein	head and packaging
UniRef90	UHGV-0117477_48	UniRef90_A0A7X5DZ98	344.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0117477_48	476272.RUMHYD_01946	234.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0117477_48	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0117477_48	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0117477_49	UniRef90_R6N215	82.0	5.26e-18	Phage QLRG family putative DNA packaging	N/A
structural_annotation	UHGV-0117477_49	TIGR01560	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0117477_50	1298920.KI911353_gene2656	54.3	0.00000016	N/A	N/A
structural_annotation	UHGV-0117477_50	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0117477_52	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0117477_53	phrog_158	44.1	0.0000000000036	major tail protein	tail
UniRef90	UHGV-0117477_53	UniRef90_UPI001D06C8CA	89.4	4.79e-20	phage tail protein	N/A
eggNOG-mapper	UHGV-0117477_53	1449343.JQLQ01000002_gene1514	53.1	0.00000108	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-0117477_53	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0117477_54	1123263.AUKY01000015_gene1618	55.8	0.000000017	N/A	N/A
Pfam	UHGV-0117477_54	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-0117477_54	PF16478	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0117477_55	1121333.JMLH01000047_gene1011	74.7	0.00000000000000168	N/A	N/A
PHROG	UHGV-0117477_56	phrog_1535	159.9	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0117477_56	1121866.AUGK01000003_gene1437	226.0	0	phage tail tape measure protein	N/A
COG	UHGV-0117477_56	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
PHROG	UHGV-0117477_57	phrog_1194	107.3	8.6e-32	N/A	unknown function
eggNOG-mapper	UHGV-0117477_57	1121866.AUGK01000003_gene1438	99.0	4.96e-25	N/A	N/A
Pfam	UHGV-0117477_57	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0117477_57	PF20458,TIGR02126,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-0117477_58	phrog_6616	214.8	0	tail protein	tail
eggNOG-mapper	UHGV-0117477_58	445971.ANASTE_00088	128.0	4.88e-28	N/A	N/A
structural_annotation	UHGV-0117477_58	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
KOfam	UHGV-0117477_60	K10804	47.5	0.00000000000027	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	N/A
PHROG	UHGV-0117477_60	phrog_11541	71.7	8.9e-21	N/A	unknown function
Pfam	UHGV-0117477_60	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
COG	UHGV-0117477_60	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
structural_annotation	UHGV-0117477_60	PF13472,NF007819,COG2755	N/A	N/A	N/A	N/A
KOfam	UHGV-0117477_61	K07273	176.5	0	acm; lysozyme	N/A
PHROG	UHGV-0117477_61	phrog_291	142.4	3.99931e-42	endolysin	lysis
UniRef90	UHGV-0117477_61	UniRef90_UPI001D0EE7D8	308.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0117477_61	748224.HMPREF9436_00154	286.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0117477_61	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0117477_61	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0117477_61	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0117477_62	phrog_1863	77.9	7.2e-23	N/A	unknown function
eggNOG-mapper	UHGV-0117477_62	718252.FP2_04900	151.0	0	N/A	N/A