UHGV-0118008 (vOTU-161448)

Viral Genome: UHGV-0118008

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0118008
vOTU ID	vOTU-161448
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_303227
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.05 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9756
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.03
Jumbo phage	No

Genome content
Genome length (bp)	24,043
GC content	34.80%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	26
CDS density	93%
Average CDS length (bps)	857.31
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 63.05)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0118008_2	phrog_236	91.0	2.2e-26	nucleotide kinase	other
UniRef90	UHGV-0118008_2	UniRef90_UPI000D1F5CC4	67.0	0.00000000000991	N/A	N/A
eggNOG-mapper	UHGV-0118008_2	673376.F2VHW0_9CAUD	73.9	0.00000000000000271	N/A	N/A
Pfam	UHGV-0118008_2	PF11753	N/A	N/A	N/A	DUF3310
KOfam	UHGV-0118008_3	K02319	57.2	2.1e-18	pol; DNA polymerase, archaea type [EC:2.7.7.7]	N/A
PHROG	UHGV-0118008_3	phrog_1252	494.9	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0118008_3	UniRef90_A0A1C6GWY9	731.0	0	DNA polymerase family B	N/A
eggNOG-mapper	UHGV-0118008_3	445335.CBN_1360	691.0	0	DNA polymerase elongation subunit (Family B)	N/A
COG	UHGV-0118008_3	COG0417	N/A	N/A	DNA polymerase B elongation subunit	N/A
structural_annotation	UHGV-0118008_3	PF08490,MF_04100,TIGR00592,COG0417	N/A	N/A	N/A	N/A
PHROG	UHGV-0118008_4	phrog_7778	151.5	2.8026e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0118008_4	UniRef90_UPI0009A7E289	141.0	3.15001e-40	N/A	N/A
eggNOG-mapper	UHGV-0118008_4	1123288.SOV_6c01550	145.0	1.61009e-42	N/A	N/A
Pfam	UHGV-0118008_4	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-0118008_4	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0118008_5	phrog_155	136.7	1.3e-40	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0118008_5	UniRef90_A0A1T4P1S9	175.0	0	ERF superfamily protein	N/A
eggNOG-mapper	UHGV-0118008_5	1283341.Q24LE7_BPPCD	167.0	0	ERF superfamily	N/A
Pfam	UHGV-0118008_5	PF04404	N/A	N/A	ERF superfamily	ERF
PHROG	UHGV-0118008_6	phrog_93	41.5	0.000000000015	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0118008_6	UniRef90_A0A1C6GW81	129.0	3.62e-37	VRR-NUC domain	N/A
eggNOG-mapper	UHGV-0118008_6	203119.Cthe_1738	95.9	2.77e-24	VRR_NUC	N/A
COG	UHGV-0118008_6	COG1591	N/A	N/A	Holliday junction resolvase Hjc, archaeal type	N/A
structural_annotation	UHGV-0118008_6	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0118008_7	phrog_6244	102.5	3.8e-30	N/A	unknown function
UniRef90	UHGV-0118008_7	UniRef90_UPI0006C34CBC	83.2	3.82e-17	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0118008_7	1430331.EP10_02380	64.3	0.000000000536	YqaJ viral recombinase family	N/A
COG	UHGV-0118008_7	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0118008_7	PF05565	N/A	N/A	N/A	N/A
KOfam	UHGV-0118008_8	K14440	148.5	4.06377e-44	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0118008_8	phrog_62	258.0	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0118008_8	UniRef90_A0A1C6GWE5	525.0	0	ATP-dependent helicase HepA	N/A
eggNOG-mapper	UHGV-0118008_8	1280692.AUJL01000009_gene2982	500.0	0	snf2 family	N/A
PADLOC	UHGV-0118008_8	DpdE_00006	70.2	6.8e-21	DpdE	DPD
Pfam	UHGV-0118008_8	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0118008_8	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0118008_8	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0118008_8	PF16203,MF_01821,NF038318,COG0553	N/A	N/A	N/A	N/A
Pfam	UHGV-0118008_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0118008_10	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0118008_12	K18640	113.9	2e-33	parM, stbA; plasmid segregation protein ParM	N/A
PHROG	UHGV-0118008_12	phrog_691	125.8	3e-37	partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0118008_12	UniRef90_UPI0005DE0931	211.0	0	ParM/StbA family protein	N/A
eggNOG-mapper	UHGV-0118008_12	536233.CLO_0569	125.0	4.29e-31	cell division	N/A
Pfam	UHGV-0118008_12	PF21522	N/A	N/A	Archaeal actin homologue MreB-like, C-terminal	MreB-like_C
COG	UHGV-0118008_12	COG0849	N/A	N/A	Cell division ATPase FtsA	N/A
structural_annotation	UHGV-0118008_12	PF06723,MF_02207,NF010498,COG1077	N/A	N/A	N/A	N/A
PHROG	UHGV-0118008_15	phrog_186	77.4	1.9e-22	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0118008_15	UniRef90_UPI0018A9C559	164.0	1.82169e-44	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0118008_15	1423724.BAMM01000012_gene1382	66.2	0.00000000129	N/A	N/A
Pfam	UHGV-0118008_15	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0118008_15	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0118008_15	PF13730,NF040939,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-0118008_16	K00390	74.0	6.9e-22	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0118008_16	phrog_424	164.2	0	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0118008_16	UniRef90_A0A0U3EGR7	341.0	0	Phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0118008_16	1345695.CLSA_c30150	308.0	0	N/A	N/A
Pfam	UHGV-0118008_16	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0118008_16	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0118008_16	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0118008_19	K01447	81.0	2.2e-23	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0118008_19	phrog_3088	120.0	2.3e-35	amidase	lysis
UniRef90	UHGV-0118008_19	UniRef90_A0A7X9B8R6	181.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0118008_19	1396.DJ87_1663	86.3	1.83e-16	n-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0118008_19	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0118008_19	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0118008_19	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0118008_19	PF01510,PF18342,NF008758,NF033202,COG5632	N/A	N/A	N/A	N/A
KOfam	UHGV-0118008_20	K05996	94.6	1.5e-27	cpt; carboxypeptidase T [EC:3.4.17.18]	N/A
PHROG	UHGV-0118008_20	phrog_4722	363.1	0	zinc carboxypeptidase	other
UniRef90	UHGV-0118008_20	UniRef90_UPI00112D5B96	281.0	0	M14 family metallopeptidase	N/A
eggNOG-mapper	UHGV-0118008_20	1406786.U5PVX3_9CAUD	249.0	0	metallocarboxypeptidase activity	N/A
Pfam	UHGV-0118008_20	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
Pfam	UHGV-0118008_20	PF00246	N/A	N/A	Zinc carboxypeptidase	Peptidase_M14
Pfam	UHGV-0118008_21	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
Pfam	UHGV-0118008_21	PF13229	N/A	N/A	Right handed beta helix region	Beta_helix
Pfam	UHGV-0118008_21	PF00386	N/A	N/A	C1q domain	C1q
PHROG	UHGV-0118008_22	phrog_1067	274.7	0	minor head protein	head and packaging
UniRef90	UHGV-0118008_22	UniRef90_UPI00164A835E	592.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0118008_22	999411.HMPREF1092_03309	411.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0118008_22	PF18994	N/A	N/A	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
Pfam	UHGV-0118008_22	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0118008_22	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0118008_22	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0118008_22	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0118008_23	phrog_33	67.0	5.1e-19	distal tail protein Dit	tail
UniRef90	UHGV-0118008_23	UniRef90_UPI001C8B5B0F	150.0	1.32002e-41	phage tail family protein	N/A
eggNOG-mapper	UHGV-0118008_23	1032362.F6K8S1_9CAUD	67.8	0.0000000000941	Phage tail protein	N/A
NCBIFam	UHGV-0118008_23	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
structural_annotation	UHGV-0118008_23	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0118008_24	K03529	50.8	0.0000000000000093	smc; chromosome segregation protein	N/A
PHROG	UHGV-0118008_24	phrog_4704	343.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0118008_24	UniRef90_A0A7I8E085	194.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0118008_24	1415774.U728_1244	297.0	0	tail tape measure protein	N/A
Pfam	UHGV-0118008_24	PF00261	N/A	N/A	Tropomyosin	Tropomyosin
Pfam	UHGV-0118008_24	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0118008_24	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0118008_24	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0118008_24	PF10145,PF05384,TIGR01760,TIGR02559,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0118008_25	536233.CLO_1369	51.2	0.000000966	N/A	N/A
structural_annotation	UHGV-0118008_25	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0118008_26	phrog_88	73.1	3.9e-21	major tail protein	tail
eggNOG-mapper	UHGV-0118008_26	1414720.CBYM010000049_gene117	64.3	0.000000000514	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0118008_26	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0118008_26	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A