UHGV-0118170 (vOTU-074197)

Viral Genome: UHGV-0118170

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0118170
vOTU ID	vOTU-074197
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_300292
Associated BioSample	SAMEA103958154
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.55 (High-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.982
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.72
Jumbo phage	No

Genome content
Genome length (bp)	34,765
GC content	59.54%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	57
CDS density	93%
Average CDS length (bps)	567.95
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 94.55)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0118170_1	phrog_374	55.3	0.0000000000000016	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0118170_1	387344.LVIS_0713	66.6	0.00000000000368	N/A	N/A
PHROG	UHGV-0118170_3	phrog_190	100.7	1.5e-29	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0118170_3	UniRef90_UPI0006C2AC63	120.0	6.5e-32	N/A	N/A
eggNOG-mapper	UHGV-0118170_3	1226322.HMPREF1545_00295	113.0	1.22e-29	N/A	N/A
Pfam	UHGV-0118170_3	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0118170_3	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0118170_4	phrog_22543	42.5	0.00000000001	N/A	unknown function
PHROG	UHGV-0118170_6	phrog_3136	140.1	6.60012e-42	N/A	unknown function
UniRef90	UHGV-0118170_6	UniRef90_A0A329TS47	174.0	0	ASCH domain-containing protein	N/A
COG	UHGV-0118170_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0118170_6	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0118170_7	phrog_424	77.5	1.7e-22	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0118170_7	445972.ANACOL_01819	493.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
COG	UHGV-0118170_7	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0118170_7	PF01507,MF_00064,NF010367,COG0175	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0118170_11	PF05082	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0118170_12	NF041247	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0118170_14	PF10548	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0118170_15	642492.Clole_0961	68.6	0.0000000000000216	N/A	N/A
structural_annotation	UHGV-0118170_15	PF12286	N/A	N/A	N/A	N/A
KOfam	UHGV-0118170_18	K22300	55.4	0.0000000000000015	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0118170_18	phrog_8	55.9	7.7e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0118170_18	UniRef90_A0A2U1BEG8	125.0	1e-34	Helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0118170_18	445972.ANACOL_03315	111.0	4e-30	N/A	N/A
PADLOC	UHGV-0118170_18	retron_type_VI_hth_cluster2_1	41.2	0.000000000036	N/A	Retron
Pfam	UHGV-0118170_18	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0118170_18	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0118170_18	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0118170_19	552398.HMPREF0866_02158	53.5	0.00000466	NOG18738 non supervised orthologous group	N/A
COG	UHGV-0118170_19	COG2169	N/A	N/A	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	N/A
structural_annotation	UHGV-0118170_19	PF02805	N/A	N/A	N/A	N/A
PHROG	UHGV-0118170_20	phrog_10292	75.1	3e-22	N/A	unknown function
UniRef90	UHGV-0118170_20	UniRef90_A0A416W984	98.2	1.13e-23	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0118170_20	1033810.HLPCO_001631	81.6	2.77e-18	TM2 domain	N/A
Pfam	UHGV-0118170_20	PF13240	N/A	N/A	zinc-ribbon domain	zinc_ribbon_2
Pfam	UHGV-0118170_20	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-0118170_20	COG2314	N/A	N/A	N/A	N/A
Pfam	UHGV-0118170_21	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0118170_21	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0118170_21	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0118170_22	K06400	251.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0118170_22	phrog_95	265.2	0	integrase	integration and excision
UniRef90	UHGV-0118170_22	UniRef90_G9YSD9	416.0	0	Resolvase protein	N/A
eggNOG-mapper	UHGV-0118170_22	1408437.JNJN01000002_gene1420	409.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0118170_22	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0118170_22	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0118170_22	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0118170_22	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0118170_22	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0118170_23	UniRef90_A0A7M1RTM1	76.6	0.0000000000000241	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0118170_23	1378168.N510_03079	66.6	0.000000000056	N/A	N/A
KOfam	UHGV-0118170_26	K19167	108.8	7.1e-32	abiQ; protein AbiQ	N/A
PHROG	UHGV-0118170_26	phrog_9764	114.9	6.6e-34	N/A	unknown function
UniRef90	UHGV-0118170_26	UniRef90_A0A845R8D8	216.0	0	Type III toxin-antitoxin system ToxN/AbiQ family toxin	N/A
eggNOG-mapper	UHGV-0118170_26	1519439.JPJG01000060_gene1906	178.0	0	Toxin ToxN, type III toxin-antitoxin system	N/A
PADLOC	UHGV-0118170_26	AbiQ	135.2	7.5e-40	AbiQ	Abi
Pfam	UHGV-0118170_26	PF13958	N/A	N/A	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin
structural_annotation	UHGV-0118170_26	PF13958	N/A	N/A	N/A	N/A
UniRef90	UHGV-0118170_28	UniRef90_UPI00164EA432	224.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0118170_28	525254.HMPREF0072_1273	218.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
COG	UHGV-0118170_28	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0118170_28	NF033743	N/A	N/A	N/A	N/A
PHROG	UHGV-0118170_29	phrog_6918	92.8	2.4e-27	holin	lysis
UniRef90	UHGV-0118170_29	UniRef90_A0A316QCY7	102.0	3.48e-26	Holin	N/A
eggNOG-mapper	UHGV-0118170_29	1297617.JPJD01000020_gene301	100.0	2.43e-26	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0118170_29	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0118170_29	PF09682,TIGR01673	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0118170_33	1519439.JPJG01000060_gene1895	59.7	0.0000000113	N/A	N/A
structural_annotation	UHGV-0118170_33	PF10618	N/A	N/A	N/A	N/A
PHROG	UHGV-0118170_35	phrog_10993	86.6	2.7e-25	Hoc-like head decoration	head and packaging
eggNOG-mapper	UHGV-0118170_35	742738.HMPREF9460_02534	67.8	0.000000000407	N/A	N/A
Pfam	UHGV-0118170_35	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0118170_35	PF19789	N/A	N/A	N/A	N/A
COG	UHGV-0118170_36	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
eggNOG-mapper	UHGV-0118170_37	411471.SUBVAR_06929	301.0	0	ATPase involved in DNA repair	N/A
COG	UHGV-0118170_37	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
structural_annotation	UHGV-0118170_38	PF10651	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0118170_40	PF18614,MF_00085,NF003076,COG0231	N/A	N/A	N/A	N/A
PHROG	UHGV-0118170_41	phrog_26795	136.6	6.89999e-41	N/A	unknown function
eggNOG-mapper	UHGV-0118170_41	1195236.CTER_5102	153.0	2.08e-40	N/A	N/A
structural_annotation	UHGV-0118170_41	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0118170_42	phrog_37549	83.7	1.4e-24	virion structural protein	head and packaging
UniRef90	UHGV-0118170_42	UniRef90_A0A3D0W045	219.0	0	Fibronectin type-III domain-containing protein	N/A
eggNOG-mapper	UHGV-0118170_42	1195236.CTER_5103	129.0	3.13e-28	N/A	N/A
structural_annotation	UHGV-0118170_42	PF02010,PF06848,PF19266,MF_04116,NF033679,NF032891,TIGR01633,TIGR04488,COG3401,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0118170_43	phrog_33680	151.5	5.60519e-45	N/A	unknown function
UniRef90	UHGV-0118170_43	UniRef90_A0A2Z4I560	233.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0118170_43	498761.HM1_2969	214.0	0	nuclear chromosome segregation	N/A
COG	UHGV-0118170_43	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0118170_43	TIGR01760,COG5280	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0118170_44	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0118170_45	phrog_88	85.1	9.2e-25	major tail protein	tail
UniRef90	UHGV-0118170_45	UniRef90_S0FUN2	116.0	1.68e-29	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0118170_45	1195236.CTER_5106	116.0	2.82e-30	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0118170_45	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-0118170_45	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0118170_45	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0118170_46	phrog_5	44.7	0.000000000003	tail completion or Neck1 protein	connector
structural_annotation	UHGV-0118170_46	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0118170_47	1487921.DP68_11350	60.8	0.00000000014	N/A	N/A
structural_annotation	UHGV-0118170_47	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0118170_48	phrog_1951	73.3	2.8e-21	head-tail adaptor	connector
UniRef90	UHGV-0118170_48	UniRef90_A0A1F8UNT5	62.8	0.0000000000989	Phage head-tail adapter protein	N/A
eggNOG-mapper	UHGV-0118170_48	1094508.Tsac_2422	51.2	0.000000631	Phage head-tail joining protein	N/A
Pfam	UHGV-0118170_48	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
NCBIFam	UHGV-0118170_48	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0118170_48	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0118170_48	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0118170_49	phrog_5223	43.8	0.0000000000036	neck protein	connector
UniRef90	UHGV-0118170_49	UniRef90_E6MGY0	58.5	0.00000000355	Putative phage DNA packaging protein	N/A
eggNOG-mapper	UHGV-0118170_49	887929.HMP0721_1264	58.5	0.000000000596	N/A	N/A
PHROG	UHGV-0118170_50	phrog_10	182.3	0	major head protein	head and packaging
UniRef90	UHGV-0118170_50	UniRef90_UPI00189AE5FE	399.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0118170_50	1280689.AUJC01000011_gene1521	388.0	0	Phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0118170_50	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0118170_50	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0118170_50	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0118170_50	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0118170_51	K01358	130.6	1.9e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0118170_51	phrog_94	196.5	0	head maturation protease	head and packaging
UniRef90	UHGV-0118170_51	UniRef90_UPI0018979DC8	202.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0118170_51	1280689.AUJC01000011_gene1520	187.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0118170_51	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0118170_51	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0118170_51	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0118170_52	phrog_12	178.4	0	portal protein	head and packaging
UniRef90	UHGV-0118170_52	UniRef90_C4GAS6	502.0	0	Putative phage portal protein, HK97 family	N/A
eggNOG-mapper	UHGV-0118170_52	626523.GCWU000342_01027	502.0	0	Portal protein	N/A
Pfam	UHGV-0118170_52	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0118170_52	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0118170_52	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0118170_53	phrog_9	384.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0118170_53	UniRef90_UPI001D07C789	796.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0118170_53	1203606.HMPREF1526_00981	738.0	0	Terminase	N/A
Pfam	UHGV-0118170_53	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0118170_53	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0118170_53	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0118170_53	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0118170_54	phrog_1066	130.2	7.9e-39	N/A	unknown function
eggNOG-mapper	UHGV-0118170_54	1382358.JHVN01000024_gene1703	124.0	6.78e-35	N/A	N/A
structural_annotation	UHGV-0118170_54	PF05119,TIGR01558	N/A	N/A	N/A	N/A
PHROG	UHGV-0118170_55	phrog_119	48.9	0.000000000000091	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0118170_55	UniRef90_A0A174XSZ8	125.0	5.87e-35	Prophage LambdaBa04, GP54	N/A
eggNOG-mapper	UHGV-0118170_55	1235793.C809_01915	120.0	1.73e-33	HNH endonuclease	N/A
COG	UHGV-0118170_55	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
eggNOG-mapper	UHGV-0118170_56	1297617.JPJD01000059_gene2640	84.7	3.61e-19	N/A	N/A
structural_annotation	UHGV-0118170_56	PF06530,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0118170_57	phrog_3584	113.1	2.4e-33	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0118170_57	537013.CLOSTMETH_02141	72.8	0.000000000000631	N/A	N/A
structural_annotation	UHGV-0118170_57	PF21578,MF_00360	N/A	N/A	N/A	N/A