UHGV-0118696 (vOTU-127224)

Viral Genome: UHGV-0118696

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0118696
vOTU ID	vOTU-127224
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_309169
Associated BioSample	SAMEA37062418
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.99 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	4
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9826
Virus hallmark genes (geNomad)	1
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	-0.58
Jumbo phage	No

Genome content
Genome length (bp)	22,741
GC content	53.32%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	49
CDS density	89%
Average CDS length (bps)	411.55
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 53.99)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0118696_2	phrog_31538	50.2	0.000000000000061	N/A	unknown function
eggNOG-mapper	UHGV-0118696_2	428125.CLOLEP_01433	65.1	0.000000000000968	N/A	N/A
PHROG	UHGV-0118696_3	phrog_13589	156.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0118696_3	411460.RUMTOR_01324	200.0	0	N/A	N/A
UniRef90	UHGV-0118696_4	UniRef90_A0A411ZUM8	207.0	0	Leucine-rich repeat domain-containing protein	N/A
eggNOG-mapper	UHGV-0118696_4	471875.RUMLAC_02240	121.0	2.47e-27	dockerin type I repeat-containing domain protein	N/A
Pfam	UHGV-0118696_4	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
COG	UHGV-0118696_4	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0118696_4	PF13306,NF041351	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0118696_6	411471.SUBVAR_06976	53.9	0.00000032	N/A	N/A
structural_annotation	UHGV-0118696_6	PF14600	N/A	N/A	N/A	N/A
PHROG	UHGV-0118696_7	phrog_937	48.5	0.00000000000019	hemolysin	other
eggNOG-mapper	UHGV-0118696_7	1519439.JPJG01000023_gene533	66.6	0.000000000000485	N/A	N/A
PHROG	UHGV-0118696_9	phrog_13256	62.9	3.1e-18	N/A	unknown function
eggNOG-mapper	UHGV-0118696_9	1519439.JPJG01000023_gene535	73.6	1.72e-16	N/A	N/A
UniRef90	UHGV-0118696_10	UniRef90_H1CEM5	219.0	0	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-0118696_10	525254.HMPREF0072_1273	207.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
COG	UHGV-0118696_10	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0118696_10	NF033743	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0118696_11	PF16509,MF_00245,NF001066,COG2739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0118696_13	1384065.JAGS01000001_gene2489	51.2	0.00000104	N/A	N/A
PHROG	UHGV-0118696_14	phrog_3754	102.8	3.1e-30	N/A	unknown function
eggNOG-mapper	UHGV-0118696_14	476272.RUMHYD_01764	166.0	0	N/A	N/A
PHROG	UHGV-0118696_15	phrog_21718	103.3	2.2e-30	N/A	unknown function
eggNOG-mapper	UHGV-0118696_15	476272.RUMHYD_01768	57.0	0.0000000368	N/A	N/A
PHROG	UHGV-0118696_16	phrog_22984	72.2	3.5e-23	N/A	unknown function
PHROG	UHGV-0118696_17	phrog_16490	135.3	1.4e-40	N/A	unknown function
eggNOG-mapper	UHGV-0118696_17	1408437.JNJN01000043_gene803	138.0	2.2e-37	N/A	N/A
PHROG	UHGV-0118696_18	phrog_20016	194.9	0	N/A	unknown function
UniRef90	UHGV-0118696_18	UniRef90_A0A285PT46	187.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0118696_18	1226322.HMPREF1545_00077	174.0	0	N/A	N/A
structural_annotation	UHGV-0118696_18	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0118696_19	PF12510	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0118696_20	1226322.HMPREF1545_00079	112.0	1.58e-30	N/A	N/A
KOfam	UHGV-0118696_21	K14059	166.5	0	int; integrase	N/A
PHROG	UHGV-0118696_21	phrog_1	167.8	0	integrase	integration and excision
UniRef90	UHGV-0118696_21	UniRef90_A0A2Z4QB94	244.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0118696_21	1226322.HMPREF1545_00144	131.0	6.86e-33	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0118696_21	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0118696_21	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0118696_21	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0118696_22	K07729	40.2	0.000000000057	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-0118696_22	UniRef90_A0A3D3Y4M8	77.8	0.000000000000027	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0118696_22	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0118696_22	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0118696_24	phrog_10292	62.9	3.6e-18	N/A	unknown function
UniRef90	UHGV-0118696_24	UniRef90_UPI0009DE3FE8	164.0	0	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0118696_24	665956.HMPREF1032_00562	147.0	4.76441e-44	TM2 domain	N/A
Pfam	UHGV-0118696_24	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-0118696_24	COG2314	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0118696_24	PF05154,PF12773,MF_00788,NF003161	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0118696_25	477974.Daud_0794	72.8	0.000000000000792	PFAM nuclease (SNase	N/A
Pfam	UHGV-0118696_25	PF08139	N/A	N/A	Prokaryotic membrane lipoprotein lipid attachment site	LPAM_1
Pfam	UHGV-0118696_25	PF02805	N/A	N/A	Metal binding domain of Ada	Ada_Zn_binding
COG	UHGV-0118696_25	COG1525	N/A	N/A	Endonuclease YncB, thermonuclease family	N/A
structural_annotation	UHGV-0118696_25	PF02805	N/A	N/A	N/A	N/A
PHROG	UHGV-0118696_27	phrog_8	54.6	0.0000000000000028	transcriptional regulator	transcription regulation
UniRef90	UHGV-0118696_27	UniRef90_A0A847W1V2	70.1	0.0000000000000202	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0118696_27	665950.HMPREF1025_02561	67.0	0.0000000000000449	sequence-specific DNA binding	N/A
Pfam	UHGV-0118696_27	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0118696_27	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0118696_27	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0118696_28	PF21291,TIGR03070,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0118696_29	760568.Desku_0919	109.0	4.26e-27	N/A	N/A
structural_annotation	UHGV-0118696_29	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
KOfam	UHGV-0118696_30	K24213	49.3	0.000000000000061	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	N/A
PHROG	UHGV-0118696_30	phrog_4433	241.7	0	N/A	unknown function
UniRef90	UHGV-0118696_30	UniRef90_A0A1V5NWB8	68.9	0.000000000736	Collagen triple helix repeat (20 copies)	N/A
eggNOG-mapper	UHGV-0118696_30	269482.Bcep1808_1157	89.7	1.09e-17	Flagellar Assembly Protein A	N/A
Pfam	UHGV-0118696_30	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0118696_30	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0118696_30	NF007410	N/A	N/A	N/A	N/A
PHROG	UHGV-0118696_32	phrog_4973	59.7	4.7e-17	N/A	unknown function
UniRef90	UHGV-0118696_32	UniRef90_A0A1W1YSW9	79.7	5.63e-18	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0118696_32	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0118696_32	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
PHROG	UHGV-0118696_34	phrog_659	43.7	0.0000000000034	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0118696_34	UniRef90_A0A6N9QJT6	199.0	0	N/A	N/A
eggNOG-mapper	UHGV-0118696_34	33035.JPJF01000135_gene5082	134.0	9.65e-37	N/A	N/A
Pfam	UHGV-0118696_34	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0118696_34	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
UniRef90	UHGV-0118696_35	UniRef90_B0PAM4	141.0	2.75e-39	YqaJ domain-containing protein	N/A
structural_annotation	UHGV-0118696_35	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0118696_36	phrog_72	75.3	7.7e-22	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0118696_36	UniRef90_A0A8D9PDS2	167.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-0118696_36	445972.ANACOL_01825	166.0	0	N/A	N/A
Pfam	UHGV-0118696_36	PF05772	N/A	N/A	NinB protein	NinB
structural_annotation	UHGV-0118696_36	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0118696_37	phrog_7370	66.5	3.6e-19	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0118696_37	UniRef90_A0A3D1LDS4	149.0	7.00649e-45	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0118696_37	1235800.C819_02254	64.3	0.0000000000081	HNH nucleases	N/A
Pfam	UHGV-0118696_37	PF01844	N/A	N/A	HNH endonuclease	HNH
KOfam	UHGV-0118696_38	K03111	133.3	3e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0118696_38	phrog_44	134.9	5.9e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0118696_38	UniRef90_A0A357B3Z3	145.0	2.29953e-42	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0118696_38	693746.OBV_19910	127.0	8.09e-36	Single-strand binding protein family	N/A
Pfam	UHGV-0118696_38	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0118696_38	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0118696_38	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0118696_38	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0118696_38	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0118696_39	phrog_15768	47.5	0.00000000000033	N/A	unknown function
UniRef90	UHGV-0118696_39	UniRef90_A0A7C1PUJ6	102.0	3.77e-23	N/A	N/A
COG	UHGV-0118696_39	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0118696_39	PF07120,COG3756	N/A	N/A	N/A	N/A
PHROG	UHGV-0118696_44	phrog_3136	132.7	1.4e-39	N/A	unknown function
eggNOG-mapper	UHGV-0118696_44	1235793.C809_02645	68.2	0.0000000000316	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0118696_44	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0118696_44	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0118696_45	phrog_38832	76.4	1.2e-22	N/A	unknown function
eggNOG-mapper	UHGV-0118696_45	445972.ANACOL_00165	74.7	0.0000000000000798	N/A	N/A
PHROG	UHGV-0118696_48	phrog_22543	42.2	0.000000000014	N/A	unknown function