UHGV-0119262 (vOTU-080681)

Viral Genome: UHGV-0119262

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0119262
vOTU ID	vOTU-080681
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_307760
Associated BioSample	SAMEA37080418
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	6
Recoded stop codon	No

Viral Content
geNomad score	0.9657
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	1.28
Jumbo phage	No

Genome content
Genome length (bp)	42,230
GC content	58.37%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	48
CDS density	90%
Average CDS length (bps)	793.19
Total tRNA genes	4
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0119262_1	K18908	161.9	0	mepA; multidrug efflux pump	N/A
PHROG	UHGV-0119262_1	phrog_6241	274.5	0	N/A	unknown function
UniRef90	UHGV-0119262_1	UniRef90_A0A1T4WIY6	834.0	0	Putative efflux protein, MATE family	N/A
eggNOG-mapper	UHGV-0119262_1	411471.SUBVAR_05085	734.0	0	MATE efflux family protein	N/A
Pfam	UHGV-0119262_1	PF01554	N/A	N/A	MatE	MatE
NCBIFam	UHGV-0119262_1	TIGR00797.1	N/A	N/A	MATE family efflux transporter	N/A
COG	UHGV-0119262_1	COG0534	N/A	N/A	Na+-driven multidrug efflux pump, DinF/NorM/MATE family	N/A
structural_annotation	UHGV-0119262_1	PF03023,MF_00400,NF041801,COG0534	N/A	N/A	N/A	N/A
KOfam	UHGV-0119262_2	K10844	528.7	0	ERCC2, XPD; DNA excision repair protein ERCC-2 [EC:5.6.2.3]	N/A
PHROG	UHGV-0119262_2	phrog_2488	108.8	3.9e-32	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0119262_2	UniRef90_A0A1T4WJF6	1551.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0119262_2	411471.SUBVAR_05091	1213.0	0	HELICc2	N/A
PADLOC	UHGV-0119262_2	DinG	390.5	0	CAS-IV-A; associated	CRISPR-CAS
Pfam	UHGV-0119262_2	PF06733	N/A	N/A	DEAD_2	DEAD_2
Pfam	UHGV-0119262_2	PF13307	N/A	N/A	Helicase C-terminal domain	Helicase_C_2
COG	UHGV-0119262_2	COG1199	N/A	N/A	Rad3-related DNA helicase DinG	N/A
KOfam	UHGV-0119262_3	K21929	235.7	0	udg; uracil-DNA glycosylase [EC:3.2.2.27]	N/A
UniRef90	UHGV-0119262_3	UniRef90_A0A1Q6SWB8	389.0	0	Type-4 uracil-DNA glycosylase	N/A
eggNOG-mapper	UHGV-0119262_3	411471.SUBVAR_05090	344.0	0	Uracil-DNA glycosylase	N/A
Pfam	UHGV-0119262_3	PF03167	N/A	N/A	Uracil DNA glycosylase superfamily	UDG
NCBIFam	UHGV-0119262_3	TIGR00758.1	N/A	N/A	uracil-DNA glycosylase, family 4	N/A
COG	UHGV-0119262_3	COG1573	N/A	N/A	Uracil-DNA glycosylase	N/A
KOfam	UHGV-0119262_4	K08591	137.6	9.79998e-41	plsY; acyl phosphate:glycerol-3-phosphate acyltransferase [EC:2.3.1.275]	N/A
PHROG	UHGV-0119262_4	phrog_36754	81.0	2e-23	N/A	unknown function
UniRef90	UHGV-0119262_4	UniRef90_A0A1T4WK61	395.0	0	Glycerol-3-phosphate acyltransferase	N/A
eggNOG-mapper	UHGV-0119262_4	742738.HMPREF9460_03920	197.0	0	Catalyzes the transfer of an acyl group from acyl- phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP	N/A
Pfam	UHGV-0119262_4	PF02660	N/A	N/A	Glycerol-3-phosphate acyltransferase	G3P_acyltransf
COG	UHGV-0119262_4	COG0344	N/A	N/A	Phospholipid biosynthesis protein PlsY, probable glycerol-3-phosphate acyltransferase	N/A
HAMAP	UHGV-0119262_4	MF_01043	N/A	N/A	Glycerol-3-phosphate acyltransferase [plsY]	N/A
KOfam	UHGV-0119262_5	K06400	346.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0119262_5	phrog_95	342.1	0	integrase	integration and excision
UniRef90	UHGV-0119262_5	UniRef90_UPI0015CF0455	350.0	0	recombinase family protein	N/A
eggNOG-mapper	UHGV-0119262_5	411483.FAEPRAA2165_03280	317.0	0	Recombinase zinc beta ribbon domain	N/A
Pfam	UHGV-0119262_5	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0119262_5	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0119262_5	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0119262_5	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0119262_5	PF00239,PF07508,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0119262_6	K22300	67.6	2.5e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0119262_6	phrog_4	51.2	0.00000000000002	transcriptional repressor	transcription regulation
UniRef90	UHGV-0119262_6	UniRef90_E2ZI88	114.0	5.33e-30	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0119262_6	748224.HMPREF9436_01379	114.0	8.95e-31	N/A	N/A
Pfam	UHGV-0119262_6	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0119262_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0119262_6	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0119262_8	1499683.CCFF01000017_gene1919	62.8	0.00000000189	DNA/RNA non-specific endonuclease	N/A
COG	UHGV-0119262_8	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-0119262_14	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
PHROG	UHGV-0119262_15	phrog_10280	48.2	0.00000000000015	N/A	unknown function
eggNOG-mapper	UHGV-0119262_15	1211643.K4JNW2_9CAUD	57.8	0.00000000193	N/A	N/A
PHROG	UHGV-0119262_16	phrog_2562	98.9	3.2e-29	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0119262_16	UniRef90_UPI00189A2195	114.0	4.8e-26	N/A	N/A
eggNOG-mapper	UHGV-0119262_16	1235790.C805_00030	109.0	2.33e-25	N/A	N/A
Pfam	UHGV-0119262_16	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-0119262_16	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-0119262_17	phrog_824	135.5	1.90001e-40	N/A	unknown function
UniRef90	UHGV-0119262_17	UniRef90_A0A645CPG3	119.0	1.07e-31	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0119262_17	411459.RUMOBE_01753	119.0	6.14e-32	VRR-NUC domain	N/A
Pfam	UHGV-0119262_17	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0119262_17	PF08774	N/A	N/A	N/A	N/A
KOfam	UHGV-0119262_19	K03496	157.5	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0119262_19	phrog_164	129.1	3.9e-38	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0119262_19	UniRef90_UPI001F3C1DB2	110.0	2.26e-25	ParA family protein	N/A
eggNOG-mapper	UHGV-0119262_19	1211777.BN77_0818	100.0	2.45e-22	ATPases involved in chromosome partitioning	N/A
Pfam	UHGV-0119262_19	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0119262_19	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0119262_19	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0119262_20	K03497	97.6	2.1e-28	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0119262_20	phrog_15982	123.1	2.2e-36	N/A	unknown function
UniRef90	UHGV-0119262_20	UniRef90_UPI0018C6BF0C	95.1	6.44e-18	ParB N-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0119262_20	665956.HMPREF1032_00130	101.0	2.28e-20	ParB-like nuclease domain	N/A
Pfam	UHGV-0119262_20	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0119262_20	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0119262_20	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0119262_22	phrog_7711	96.3	2.6e-28	N/A	unknown function
eggNOG-mapper	UHGV-0119262_22	886882.PPSC2_p0287	70.5	0.0000000000000874	N/A	N/A
structural_annotation	UHGV-0119262_23	PF01396	N/A	N/A	N/A	N/A
PHROG	UHGV-0119262_24	phrog_2118	42.0	0.00000000002	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0119262_24	1291050.JAGE01000001_gene468	54.7	0.00000000602	endonuclease activity	N/A
COG	UHGV-0119262_24	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
UniRef90	UHGV-0119262_27	UniRef90_F0Z4Q0	76.6	0.0000000000000212	N/A	N/A
eggNOG-mapper	UHGV-0119262_27	1408321.JNJD01000008_gene2078	90.9	1.66e-20	N/A	N/A
Pfam	UHGV-0119262_27	PF07866	N/A	N/A	N/A	DUF1653
COG	UHGV-0119262_27	COG4728	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0119262_27	PF07866,COG4728	N/A	N/A	N/A	N/A
KOfam	UHGV-0119262_29	K23779	49.1	0.00000000000013	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0119262_29	phrog_5823	43.2	0.0000000000048	transcriptional regulator	transcription regulation
UniRef90	UHGV-0119262_29	UniRef90_A0A3E2XUS7	56.6	0.0000000203	XRE family transcriptional regulator	N/A
Pfam	UHGV-0119262_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0119262_29	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0119262_30	PF19923	N/A	N/A	N/A	N/A
KOfam	UHGV-0119262_31	K07474	73.8	5.1e-21	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0119262_31	phrog_51	75.7	7.3e-22	terminase small subunit	head and packaging
UniRef90	UHGV-0119262_31	UniRef90_UPI00164CD799	85.5	3.31e-18	terminase small subunit	N/A
eggNOG-mapper	UHGV-0119262_31	1158602.I590_02555	61.6	0.00000000108	Terminase small subunit	N/A
Pfam	UHGV-0119262_31	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0119262_31	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
KOfam	UHGV-0119262_32	K06909	105.0	9.3e-31	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0119262_32	phrog_979	173.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0119262_32	UniRef90_UPI001CF8008D	441.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0119262_32	748224.HMPREF9436_01395	416.0	0	Terminase-like family	N/A
Pfam	UHGV-0119262_32	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0119262_32	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0119262_32	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0119262_35	411483.FAEPRAA2165_01035	89.7	7.1e-17	N/A	N/A
PHROG	UHGV-0119262_36	phrog_22978	589.4	0	N/A	unknown function
UniRef90	UHGV-0119262_36	UniRef90_R5AJI2	830.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-0119262_36	1410650.JHWL01000003_gene2814	575.0	0	N/A	N/A
Pfam	UHGV-0119262_36	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
PHROG	UHGV-0119262_38	phrog_25468	90.2	2e-27	N/A	unknown function
eggNOG-mapper	UHGV-0119262_38	1415148.V5Q7F2_9CAUD	53.9	0.0000083	N/A	N/A
PHROG	UHGV-0119262_40	phrog_5302	173.3	0	tail protein	tail
UniRef90	UHGV-0119262_40	UniRef90_A0A1F8V1G3	149.0	7.28e-35	BppU_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0119262_40	411470.RUMGNA_00248	151.0	1.59e-36	Phage tail-collar fibre protein	N/A
COG	UHGV-0119262_40	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-0119262_40	NF011184	N/A	N/A	N/A	N/A
KOfam	UHGV-0119262_41	K00986	84.5	1.4e-24	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0119262_41	phrog_1423	151.5	7.00649e-45	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0119262_41	UniRef90_UPI0012B5656A	194.0	0	RNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-0119262_41	411468.CLOSCI_01505	150.0	3.5e-39	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0119262_41	icity0040	56.4	6.4e-16	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0119262_41	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0119262_41	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0119262_41	PF00078,MF_01390,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0119262_42	phrog_4912	73.2	4.6e-21	tail fiber assembly	tail
UniRef90	UHGV-0119262_42	UniRef90_UPI00030EC628	70.9	0.000000000000644	phage tail assembly chaperone	N/A
eggNOG-mapper	UHGV-0119262_42	643562.Daes_0337	72.8	0.0000000000000234	N/A	N/A
Pfam	UHGV-0119262_42	PF16778	N/A	N/A	Phage tail assembly chaperone protein	Phage_tail_APC
structural_annotation	UHGV-0119262_42	PF16778	N/A	N/A	N/A	N/A
PHROG	UHGV-0119262_44	phrog_111	166.3	0	DNA methyltransferase	other
UniRef90	UHGV-0119262_44	UniRef90_A0A316S635	218.0	0	Adenine methyltransferase	N/A
eggNOG-mapper	UHGV-0119262_44	1567011.A0A0A7RUD1_9VIRU	188.0	0	DNA N-6-adenine-methyltransferase (Dam)	N/A
PADLOC	UHGV-0119262_44	oMTase_00015	190.1	0	orphan methyltransferase	RM
Pfam	UHGV-0119262_44	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
structural_annotation	UHGV-0119262_44	PF05869,MF_03187,TIGR01712,COG2263	N/A	N/A	N/A	N/A
KOfam	UHGV-0119262_45	K19304	49.3	0.000000000000089	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0119262_45	phrog_21656	47.3	0.00000000000012	peptidase	other
UniRef90	UHGV-0119262_45	UniRef90_UPI001C02DE01	365.0	0	peptidoglycan DD-metalloendopeptidase family protein	N/A
eggNOG-mapper	UHGV-0119262_45	411471.SUBVAR_05145	259.0	0	heme binding	N/A
Pfam	UHGV-0119262_45	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0119262_45	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0119262_45	PF01551,NF040883	N/A	N/A	N/A	N/A
PHROG	UHGV-0119262_46	phrog_355	41.7	0.000000000017	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0119262_46	UniRef90_UPI00156F0E9C	127.0	2.36e-36	N/A	N/A
eggNOG-mapper	UHGV-0119262_46	411461.DORFOR_01165	110.0	1.76e-30	N/A	N/A
structural_annotation	UHGV-0119262_46	PF14359,MF_03036,TIGR03646,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-0119262_47	phrog_37799	54.5	9.1e-16	N/A	unknown function
UniRef90	UHGV-0119262_47	UniRef90_UPI0014428221	138.0	7.13e-39	phage holin family protein	N/A
eggNOG-mapper	UHGV-0119262_47	1151292.QEW_0990	129.0	4.14e-36	Bacteriophage holin family	N/A
Pfam	UHGV-0119262_47	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0119262_47	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0119262_47	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
KOfam	UHGV-0119262_48	K03664	227.1	0	smpB; SsrA-binding protein	N/A
PHROG	UHGV-0119262_48	phrog_6791	205.3	0	N/A	unknown function
UniRef90	UHGV-0119262_48	UniRef90_D1PMA9	283.0	0	SsrA-binding protein	N/A
eggNOG-mapper	UHGV-0119262_48	411471.SUBVAR_05469	283.0	0	the 2 termini fold to resemble tRNA(Ala) and it encodes a tag peptide , a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA	N/A
Pfam	UHGV-0119262_48	PF01668	N/A	N/A	SmpB protein	SmpB
NCBIFam	UHGV-0119262_48	NF003843.0	N/A	N/A	SsrA-binding protein SmpB	N/A
COG	UHGV-0119262_48	COG0691	N/A	N/A	tmRNA-binding protein	N/A
HAMAP	UHGV-0119262_48	MF_00023	N/A	N/A	SsrA-binding protein [smpB]	N/A
structural_annotation	UHGV-0119262_48	PF01668,MF_00023,NF003843,COG0691	N/A	N/A	N/A	N/A