UHGV-0120538 (vOTU-036487)

Viral Genome: UHGV-0120538

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0120538
vOTU ID	vOTU-036487
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_288484
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.69 (Medium-quality)
Trimmed provirus	Yes
CheckV viral markers	10
CheckV host markers	3
Recoded stop codon	No

Viral Content
geNomad score	0.9763
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.56
Jumbo phage	No

Genome content
Genome length (bp)	30,427
GC content	52.94%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	53
CDS density	93%
Average CDS length (bps)	531.91
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 71.69)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0120538_1	1232443.BAIA02000078_gene6	58.2	0.00000000231	N/A	N/A
structural_annotation	UHGV-0120538_2	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0120538_3	phrog_20016	191.7	0	N/A	unknown function
UniRef90	UHGV-0120538_3	UniRef90_A0A285PT46	174.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0120538_3	1226322.HMPREF1545_00077	160.0	0	N/A	N/A
structural_annotation	UHGV-0120538_3	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0120538_5	phrog_16490	151.3	7.00649e-45	N/A	unknown function
eggNOG-mapper	UHGV-0120538_5	397290.C810_05212	134.0	6.31e-35	N/A	N/A
PHROG	UHGV-0120538_6	phrog_22984	82.9	3.3e-24	N/A	unknown function
PHROG	UHGV-0120538_7	phrog_21718	115.7	3.2e-34	N/A	unknown function
eggNOG-mapper	UHGV-0120538_7	397290.C810_05210	71.2	0.000000000000171	N/A	N/A
PHROG	UHGV-0120538_8	phrog_3754	115.4	4.2e-34	N/A	unknown function
eggNOG-mapper	UHGV-0120538_8	1226322.HMPREF1545_00073	167.0	0	N/A	N/A
KOfam	UHGV-0120538_11	K07729	63.6	4.1e-18	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0120538_11	phrog_8	60.2	5.7e-17	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0120538_11	1394176.AWUO01000014_gene642	56.6	0.000000044	N/A	N/A
Pfam	UHGV-0120538_11	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0120538_11	PF01381,MF_02017,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0120538_12	K17733	95.6	5.5e-28	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-0120538_12	phrog_6523	77.7	2.2e-22	endolysin	lysis
UniRef90	UHGV-0120538_12	UniRef90_R5RXG6	220.0	0	Serine-type D-Ala-D-Ala carboxypeptidase	N/A
eggNOG-mapper	UHGV-0120538_12	1519439.JPJG01000023_gene536	214.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
Pfam	UHGV-0120538_12	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
COG	UHGV-0120538_12	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-0120538_12	PF02557,MF_01924,NF000380,COG1876	N/A	N/A	N/A	N/A
PHROG	UHGV-0120538_13	phrog_13256	64.4	1.2e-18	N/A	unknown function
eggNOG-mapper	UHGV-0120538_13	1226322.HMPREF1545_00132	75.9	3.01e-17	N/A	N/A
eggNOG-mapper	UHGV-0120538_16	1007096.BAGW01000017_gene814	75.1	2.36e-16	N/A	N/A
PHROG	UHGV-0120538_19	phrog_10993	48.7	1.1e-16	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0120538_19	UniRef90_A0A252F2M2	234.0	0	N/A	N/A
Pfam	UHGV-0120538_19	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0120538_19	PF19789	N/A	N/A	N/A	N/A
Pfam	UHGV-0120538_22	PF18902	N/A	N/A	N/A	DUF5658
structural_annotation	UHGV-0120538_22	PF18902	N/A	N/A	N/A	N/A
UniRef90	UHGV-0120538_25	UniRef90_A0A810QCC8	155.0	5.89e-39	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0120538_25	1235797.C816_04179	205.0	0	Chaperone of endosialidase	N/A
PHROG	UHGV-0120538_26	phrog_32308	45.5	0.00000000000012	N/A	unknown function
UniRef90	UHGV-0120538_26	UniRef90_A0A2Z4QA17	263.0	0	KID repeat-containing protein	N/A
eggNOG-mapper	UHGV-0120538_26	1235797.C816_04180	313.0	0	N/A	N/A
structural_annotation	UHGV-0120538_26	PF21683,TIGR02126,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0120538_27	phrog_1194	78.1	1e-22	N/A	unknown function
eggNOG-mapper	UHGV-0120538_27	1232443.BAIA02000078_gene17	122.0	2.74e-34	N/A	N/A
Pfam	UHGV-0120538_27	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0120538_27	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0120538_28	phrog_1535	71.7	3.7e-31	tail length tape measure protein	tail
UniRef90	UHGV-0120538_28	UniRef90_A0A810PX76	100.0	3.14e-18	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0120538_28	693746.OBV_18190	210.0	0	domain protein	N/A
COG	UHGV-0120538_28	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0120538_28	PF05546,TIGR02559	N/A	N/A	N/A	N/A
PHROG	UHGV-0120538_29	phrog_17658	53.4	0.0000000000000046	N/A	unknown function
UniRef90	UHGV-0120538_29	UniRef90_A0A316PG91	92.4	4.36e-19	zinc_ribbon_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0120538_29	768710.DesyoDRAFT_1122	91.7	4.51e-20	N/A	N/A
structural_annotation	UHGV-0120538_29	PF18116,COG3402	N/A	N/A	N/A	N/A
PHROG	UHGV-0120538_30	phrog_706	98.7	6.5e-29	N/A	unknown function
UniRef90	UHGV-0120538_30	UniRef90_UPI001D069FB9	243.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0120538_30	693746.OBV_18170	188.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0120538_30	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0120538_30	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0120538_31	phrog_11299	72.6	6.6e-21	N/A	unknown function
eggNOG-mapper	UHGV-0120538_31	693746.OBV_18160	184.0	0	N/A	N/A
structural_annotation	UHGV-0120538_31	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0120538_32	phrog_3099	93.0	3.8e-27	N/A	unknown function
eggNOG-mapper	UHGV-0120538_32	1232443.BAIA02000078_gene23	234.0	0	N/A	N/A
structural_annotation	UHGV-0120538_32	TIGR02126	N/A	N/A	N/A	N/A
PHROG	UHGV-0120538_33	phrog_3266	60.2	3.3e-17	tail completion	connector
eggNOG-mapper	UHGV-0120538_33	1232443.BAIA02000078_gene24	192.0	0	N/A	N/A
structural_annotation	UHGV-0120538_33	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0120538_34	phrog_556	54.8	6.2e-16	minor head protein	head and packaging
UniRef90	UHGV-0120538_34	UniRef90_A0A2U1BEM0	172.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0120538_34	1226322.HMPREF1545_00054	130.0	3.43e-37	Minor capsid protein	N/A
Pfam	UHGV-0120538_34	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0120538_34	PF11114,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0120538_35	phrog_3366	87.8	1.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0120538_35	1226322.HMPREF1545_00053	152.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-0120538_35	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0120538_36	phrog_541	109.9	1.5e-32	head-tail adaptor	connector
eggNOG-mapper	UHGV-0120538_36	642492.Clole_0822	65.9	0.00000000000786	N/A	N/A
PHROG	UHGV-0120538_37	phrog_212	265.9	0	major head protein	head and packaging
UniRef90	UHGV-0120538_37	UniRef90_A0A2V2FIN1	503.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0120538_37	1232449.BAHV02000010_gene2714	345.0	0	N/A	N/A
structural_annotation	UHGV-0120538_37	PF05065,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0120538_38	phrog_194	90.6	2.4e-26	head scaffolding protein	head and packaging
UniRef90	UHGV-0120538_38	UniRef90_A0A2Z4Q9Y8	127.0	1.17e-33	Minor structural protein	N/A
eggNOG-mapper	UHGV-0120538_38	1232443.BAIA02000078_gene31	98.2	2.79e-23	N/A	N/A
Pfam	UHGV-0120538_38	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0120538_38	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0120538_39	phrog_581	289.3	0	minor head protein	head and packaging
UniRef90	UHGV-0120538_39	UniRef90_UPI001D080D49	557.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0120538_39	1226322.HMPREF1545_00046	355.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0120538_39	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-0120538_39	PF18451	N/A	N/A	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
COG	UHGV-0120538_39	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0120538_39	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0120538_40	phrog_533	354.1	0	portal protein	head and packaging
UniRef90	UHGV-0120538_40	UniRef90_A0A2U1BEK0	633.0	0	A118 family predicted phage portal protein	N/A
eggNOG-mapper	UHGV-0120538_40	1226322.HMPREF1545_00044	604.0	0	N/A	N/A
Pfam	UHGV-0120538_40	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0120538_40	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0120538_41	K06909	390.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0120538_41	phrog_3717	159.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0120538_41	UniRef90_A0A2U1BEH4	746.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0120538_41	33035.JPJF01000106_gene3136	469.0	0	Terminase small subunit	N/A
Pfam	UHGV-0120538_41	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0120538_41	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0120538_41	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0120538_41	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0120538_41	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0120538_43	K07319	120.7	1.4e-35	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0120538_43	phrog_498	441.7	0	DNA methyltransferase	other
UniRef90	UHGV-0120538_43	UniRef90_R5AIZ8	441.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0120538_43	1423758.BN55_01455	421.0	0	DNA methylase	N/A
PADLOC	UHGV-0120538_43	MTase_II_00015	237.9	0	Type II methyltransferase	RM
Pfam	UHGV-0120538_43	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0120538_43	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0120538_43	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0120538_43	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
UniRef90	UHGV-0120538_44	UniRef90_A0A285PYI3	65.5	0.00000000000989	Homeodomain-like domain	N/A
eggNOG-mapper	UHGV-0120538_44	742738.HMPREF9460_02503	125.0	5.24e-36	N/A	N/A
structural_annotation	UHGV-0120538_44	PF06530,MF_00674,TIGR01636,COG1342	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0120538_46	445972.ANACOL_00168	48.1	0.00000177	N/A	N/A
PHROG	UHGV-0120538_47	phrog_22543	49.6	0.00000000000005	N/A	unknown function
UniRef90	UHGV-0120538_47	UniRef90_UPI001F2DACFB	52.4	0.00000589	zinc ribbon domain-containing protein	N/A
UniRef90	UHGV-0120538_49	UniRef90_UPI0012AD39DD	58.9	0.000000207	leucine-rich repeat protein	N/A
UniRef90	UHGV-0120538_50	UniRef90_A0A098GES5	82.8	1.19e-18	Putative phage associated protein	N/A
structural_annotation	UHGV-0120538_50	PF01423,MF_00257,NF001963,COG1958	N/A	N/A	N/A	N/A
PHROG	UHGV-0120538_51	phrog_27610	54.6	0.0000000000000013	N/A	unknown function
Pfam	UHGV-0120538_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0120538_52	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0120538_52	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0120538_53	K23779	51.8	7.5e-26	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0120538_53	phrog_8	71.6	5.1e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0120538_53	UniRef90_UPI0015D721B0	60.8	0.00000000999	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0120538_53	1414719.CBYN010000013_gene1538	53.9	0.000000339	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0120538_53	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
Pfam	UHGV-0120538_53	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0120538_53	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0120538_53	PF01381,PF13744,NF041951,COG3655,COG2944	N/A	N/A	N/A	N/A