UHGV-0122017 (vOTU-153835)

Viral Genome: UHGV-0122017

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0122017
vOTU ID	vOTU-153835
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_325019
Associated BioSample	SAMN00715228
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.59 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9682
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	17.44
Jumbo phage	No

Genome content
Genome length (bp)	29,489
GC content	37.53%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	35
CDS density	85%
Average CDS length (bps)	713.49
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 57.59)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0122017_1	phrog_478	128.7	2.3e-38	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0122017_1	UniRef90_A0A285PT53	146.0	1.33964e-42	Prokaryotic membrane lipoprotein lipid attachment site profile	N/A
eggNOG-mapper	UHGV-0122017_1	478749.BRYFOR_08526	150.0	9.80909e-45	N/A	N/A
PHROG	UHGV-0122017_2	phrog_2616	49.5	0.000000000000092	N/A	unknown function
structural_annotation	UHGV-0122017_2	PF01281	N/A	N/A	N/A	N/A
PHROG	UHGV-0122017_3	phrog_194	101.0	1.5e-29	head scaffolding protein	head and packaging
UniRef90	UHGV-0122017_3	UniRef90_A0A2N0ULW9	351.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0122017_3	742765.HMPREF9457_02126	174.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0122017_3	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0122017_3	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0122017_4	phrog_422	228.6	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0122017_4	693746.OBV_18090	396.0	0	N/A	N/A
structural_annotation	UHGV-0122017_4	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0122017_5	phrog_541	78.7	6.9e-23	head-tail adaptor	connector
UniRef90	UHGV-0122017_5	UniRef90_A0A371AQT0	108.0	3.9e-28	N/A	N/A
eggNOG-mapper	UHGV-0122017_5	1449050.JNLE01000003_gene3888	80.5	6.82e-18	N/A	N/A
PHROG	UHGV-0122017_6	phrog_3366	74.2	1.7e-21	N/A	unknown function
eggNOG-mapper	UHGV-0122017_6	1449050.JNLE01000003_gene3887	88.6	8.91e-21	N/A	N/A
Pfam	UHGV-0122017_6	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0122017_6	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0122017_7	phrog_556	118.8	1.7e-35	minor head protein	head and packaging
UniRef90	UHGV-0122017_7	UniRef90_UPI00189BC4F9	184.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0122017_7	1449050.JNLE01000003_gene3886	177.0	0	N/A	N/A
Pfam	UHGV-0122017_7	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0122017_7	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0122017_8	phrog_3266	106.5	1.8e-31	tail completion	connector
eggNOG-mapper	UHGV-0122017_8	1449050.JNLE01000003_gene3885	142.0	1.07003e-41	N/A	N/A
structural_annotation	UHGV-0122017_8	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0122017_9	phrog_3099	148.3	3.64338e-44	N/A	unknown function
eggNOG-mapper	UHGV-0122017_9	1160721.RBI_II00532	232.0	0	N/A	N/A
structural_annotation	UHGV-0122017_9	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0122017_10	phrog_11299	140.3	9.6003e-42	N/A	unknown function
eggNOG-mapper	UHGV-0122017_10	1449050.JNLE01000003_gene3883	96.7	1.22e-23	N/A	N/A
structural_annotation	UHGV-0122017_10	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0122017_11	phrog_706	139.5	2.09999e-41	N/A	unknown function
UniRef90	UHGV-0122017_11	UniRef90_A0A2N0ULW2	360.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0122017_11	1160721.RBI_II00530	208.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0122017_11	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0122017_11	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0122017_13	phrog_1535	456.1	0	tail length tape measure protein	tail
UniRef90	UHGV-0122017_13	UniRef90_A0A2N0ULX3	1415.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0122017_13	33035.JPJF01000093_gene2243	348.0	0	phage tail tape measure protein	N/A
COG	UHGV-0122017_13	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0122017_13	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0122017_14	phrog_1194	60.5	2.7e-17	N/A	unknown function
eggNOG-mapper	UHGV-0122017_14	397290.C810_05238	94.4	7.23e-23	N/A	N/A
Pfam	UHGV-0122017_14	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0122017_14	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0122017_15	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0122017_16	phrog_16164	71.7	6.1e-21	N/A	unknown function
structural_annotation	UHGV-0122017_16	PF16255,NF041897,COG2755	N/A	N/A	N/A	N/A
PHROG	UHGV-0122017_17	phrog_1863	71.8	7.9e-22	N/A	unknown function
UniRef90	UHGV-0122017_17	UniRef90_UPI001F223E8B	91.7	1.34e-22	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0122017_17	1203606.HMPREF1526_02027	82.8	6.94e-20	N/A	N/A
PHROG	UHGV-0122017_18	phrog_443	63.0	8.5e-18	holin	lysis
UniRef90	UHGV-0122017_18	UniRef90_R6R2Q3	87.8	1.68e-21	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0122017_18	1298920.KI911353_gene2669	82.4	3.96e-20	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0122017_18	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0122017_18	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0122017_19	phrog_18591	132.2	2.5e-39	N/A	unknown function
eggNOG-mapper	UHGV-0122017_19	272624.lpg2561	179.0	0	N/A	N/A
KOfam	UHGV-0122017_20	K01448	55.3	0.0000000000000011	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0122017_20	phrog_435	81.4	1.6e-23	endolysin	lysis
UniRef90	UHGV-0122017_20	UniRef90_A0A373KFY8	437.0	0	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-0122017_20	1203606.HMPREF1526_01931	83.6	9.47e-16	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0122017_20	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0122017_20	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0122017_20	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
KOfam	UHGV-0122017_21	K14059	212.5	0	int; integrase	N/A
PHROG	UHGV-0122017_21	phrog_1	181.4	0	integrase	integration and excision
UniRef90	UHGV-0122017_21	UniRef90_A0A2N0UV19	768.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0122017_21	1161902.HMPREF0378_0144	199.0	0	DNA integration	N/A
Pfam	UHGV-0122017_21	PF13102	N/A	N/A	Phage integrase SAM-like domain	Phage_int_SAM_5
Pfam	UHGV-0122017_21	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0122017_21	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0122017_21	PF00589,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0122017_22	UniRef90_A0A413QAJ4	114.0	2.66e-32	DNA-binding protein	N/A
COG	UHGV-0122017_22	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
UniRef90	UHGV-0122017_25	UniRef90_A0A2N0UV97	691.0	0	Replication initiation factor	N/A
eggNOG-mapper	UHGV-0122017_25	397290.C810_03845	270.0	0	Replication initiation factor	N/A
Pfam	UHGV-0122017_25	PF02486	N/A	N/A	Replication initiation factor	Rep_trans
eggNOG-mapper	UHGV-0122017_26	1140001.I571_00067	49.3	0.00000533	N/A	N/A
structural_annotation	UHGV-0122017_26	PF06125,COG3390	N/A	N/A	N/A	N/A
PHROG	UHGV-0122017_27	phrog_1358	70.9	4.2e-22	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0122017_27	UniRef90_A0A413Q9I8	488.0	0	N/A	N/A
eggNOG-mapper	UHGV-0122017_27	1403946.Q615_SPAC00137G0102	130.0	3.93e-34	ftsk spoiiie	N/A
Pfam	UHGV-0122017_27	PF01580	N/A	N/A	FtsK/SpoIIIE family	FtsK_SpoIIIE
COG	UHGV-0122017_27	COG1674	N/A	N/A	DNA segregation ATPase FtsK/SpoIIIE or related protein	N/A
structural_annotation	UHGV-0122017_27	PF01580,MF_00350,TIGR03925,COG0433	N/A	N/A	N/A	N/A
PHROG	UHGV-0122017_31	phrog_15863	160.6	0	N/A	unknown function
UniRef90	UHGV-0122017_31	UniRef90_R6MR87	331.0	0	DnaJ-class molecular chaperone with C-terminal Zn finger domain	N/A
eggNOG-mapper	UHGV-0122017_31	1158604.I591_02854	166.0	0	DnaJ molecular chaperone homology domain	N/A
Pfam	UHGV-0122017_31	PF00226	N/A	N/A	DnaJ domain	DnaJ
COG	UHGV-0122017_31	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
KOfam	UHGV-0122017_32	K24073	96.8	1.8e-28	cnrH; RNA polymerase sigma factor CnrH	N/A
PHROG	UHGV-0122017_32	phrog_1740	63.9	2.5e-18	RNA polymerase sigma factor	transcription regulation
UniRef90	UHGV-0122017_32	UniRef90_UPI000E4E1565	741.0	0	sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0122017_32	411474.COPEUT_02341	176.0	2.8026e-45	DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog	N/A
Pfam	UHGV-0122017_32	PF04542	N/A	N/A	Sigma-70 region 2	Sigma70_r2
Pfam	UHGV-0122017_32	PF08281	N/A	N/A	Sigma-70, region 4	Sigma70_r4_2
NCBIFam	UHGV-0122017_32	TIGR02937.1	N/A	N/A	sigma-70 family RNA polymerase sigma factor	N/A
COG	UHGV-0122017_32	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0122017_32	PF07638,MF_00245,TIGR02954,COG1595	N/A	N/A	N/A	N/A
PHROG	UHGV-0122017_35	phrog_3846	165.2	0	N/A	unknown function
UniRef90	UHGV-0122017_35	UniRef90_A0A7U9SNA0	295.0	0	HEPN_MAE_28990 domain-containing protein	N/A
eggNOG-mapper	UHGV-0122017_35	562743.JH976438_gene2074	140.0	1.73e-38	N/A	N/A
Pfam	UHGV-0122017_35	PF18737	N/A	N/A	MAE_28990/MAE_18760-like HEPN	HEPN_MAE_28990
structural_annotation	UHGV-0122017_35	PF18737	N/A	N/A	N/A	N/A