UHGV-0122043 (vOTU-008086)

Viral Genome: UHGV-0122043

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0122043
vOTU ID	vOTU-008086
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_320319
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.89 (High-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral Content
geNomad score	0.9786
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.58
Jumbo phage	No

Genome content
Genome length (bp)	37,913
GC content	37.82%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	55
CDS density	93%
Average CDS length (bps)	638.13
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.89)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0122043_1	K06334	42.5	0.0000000000062	cotJC; spore coat protein JC	N/A
eggNOG-mapper	UHGV-0122043_1	515620.EUBELI_00515	72.0	0.0000000000000739	N/A	N/A
COG	UHGV-0122043_1	COG3546	N/A	N/A	Mn-containing catalase (includes spore coat protein CotJC)	N/A
KOfam	UHGV-0122043_3	K06400	372.4	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0122043_3	phrog_95	369.8	0	integrase	integration and excision
UniRef90	UHGV-0122043_3	UniRef90_A0A413YU13	917.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0122043_3	411462.DORLON_00823	452.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0122043_3	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0122043_3	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0122043_3	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0122043_3	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0122043_3	PF00239,PF07508,PF13408,NF041201,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0122043_4	1378168.N510_03179	73.6	0.00000000000000666	SWIM zinc finger	N/A
Pfam	UHGV-0122043_4	PF04434	N/A	N/A	SWIM zinc finger	SWIM
PHROG	UHGV-0122043_5	phrog_87	75.3	7e-22	metallo-protease	other
UniRef90	UHGV-0122043_5	UniRef90_A0A3R6AQ03	200.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0122043_5	397288.C806_00132	192.0	0	Zn peptidase	N/A
Pfam	UHGV-0122043_5	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0122043_5	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0122043_5	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0122043_6	K22300	56.6	5.6e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0122043_6	phrog_8	55.5	0.0000000000000013	transcriptional regulator	transcription regulation
UniRef90	UHGV-0122043_6	UniRef90_A0A1I2E7K8	98.6	3.43e-23	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-0122043_6	1211819.CALK01000005_gene2436	71.6	0.000000000000487	Peptidase S24-like	N/A
Pfam	UHGV-0122043_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0122043_6	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0122043_6	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0122043_7	K18830	44.5	0.0000000000034	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0122043_7	phrog_8	41.9	0.000000000023	transcriptional regulator	transcription regulation
UniRef90	UHGV-0122043_7	UniRef90_A0A356C4L0	115.0	9.87e-33	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0122043_7	1035189.HMPREF9954_1968	48.1	0.00000126	sequence-specific DNA binding	N/A
Pfam	UHGV-0122043_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0122043_7	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0122043_7	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0122043_9	COG1321	N/A	N/A	N/A	N/A
PHROG	UHGV-0122043_15	phrog_3584	245.2	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0122043_15	UniRef90_A0A4P8IFK4	345.0	0	N/A	N/A
eggNOG-mapper	UHGV-0122043_15	742741.HMPREF9475_00404	296.0	0	N/A	N/A
structural_annotation	UHGV-0122043_15	PF21578	N/A	N/A	N/A	N/A
KOfam	UHGV-0122043_16	K03469	64.0	3.3e-18	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0122043_16	phrog_531	61.8	1.2e-17	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0122043_16	UniRef90_A0A413YU26	289.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0122043_16	941824.TCEL_01720	73.9	0.0000000000000131	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0122043_16	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0122043_16	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0122043_16	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0122043_17	PF19962,NF011863	N/A	N/A	N/A	N/A
PHROG	UHGV-0122043_18	phrog_7566	93.2	1.7e-27	N/A	unknown function
eggNOG-mapper	UHGV-0122043_18	1304866.K413DRAFT_1198	77.8	2.38e-17	N/A	N/A
eggNOG-mapper	UHGV-0122043_20	483218.BACPEC_01167	207.0	0	N/A	N/A
PHROG	UHGV-0122043_21	phrog_8470	283.3	0	N/A	unknown function
UniRef90	UHGV-0122043_21	UniRef90_UPI00164C094F	198.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0122043_21	483218.BACPEC_01166	386.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0122043_21	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0122043_21	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0122043_22	phrog_15077	100.5	3.3e-29	N/A	unknown function
UniRef90	UHGV-0122043_22	UniRef90_A0A3A6HZA9	220.0	0	N/A	N/A
eggNOG-mapper	UHGV-0122043_22	483218.BACPEC_01165	231.0	0	N/A	N/A
structural_annotation	UHGV-0122043_22	PF11300,NF038070	N/A	N/A	N/A	N/A
KOfam	UHGV-0122043_24	K07451	44.0	0.0000000000046	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0122043_24	phrog_2118	112.0	6.2e-33	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0122043_24	UniRef90_A0A413YU08	292.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0122043_24	742740.HMPREF9474_03129	222.0	0	HNH endonuclease	N/A
Pfam	UHGV-0122043_24	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0122043_24	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0122043_24	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0122043_25	phrog_8684	63.7	7.9e-19	N/A	unknown function
UniRef90	UHGV-0122043_25	UniRef90_A0A413YU53	311.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0122043_25	476272.RUMHYD_03337	68.6	0.00000000000122	N/A	N/A
Pfam	UHGV-0122043_25	PF09643	N/A	N/A	YopX protein	YopX
structural_annotation	UHGV-0122043_25	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0122043_29	phrog_625	70.3	1.4e-20	N/A	unknown function
UniRef90	UHGV-0122043_29	UniRef90_A0A413YU40	285.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0122043_29	397290.C810_01502	133.0	1.42e-38	N/A	N/A
structural_annotation	UHGV-0122043_29	PF12961,COG2028	N/A	N/A	N/A	N/A
PHROG	UHGV-0122043_30	phrog_36	62.6	7e-18	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0122043_30	397290.C810_01391	107.0	1.45e-27	N/A	N/A
structural_annotation	UHGV-0122043_30	PF02996	N/A	N/A	N/A	N/A
KOfam	UHGV-0122043_31	K07474	152.5	4.2039e-45	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0122043_31	phrog_51	161.0	0	terminase small subunit	head and packaging
UniRef90	UHGV-0122043_31	UniRef90_A0A413YU49	371.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0122043_31	1499683.CCFF01000014_gene3916	149.0	9.94922e-43	Terminase small subunit	N/A
Pfam	UHGV-0122043_31	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0122043_31	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0122043_31	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0122043_32	K06909	95.1	9.5e-28	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0122043_32	phrog_2	68.2	1.9e-19	terminase large subunit	head and packaging
UniRef90	UHGV-0122043_32	UniRef90_A0A413YU24	968.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0122043_32	1294142.CINTURNW_1023	517.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0122043_32	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0122043_32	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0122043_32	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0122043_33	phrog_533	289.6	0	portal protein	head and packaging
UniRef90	UHGV-0122043_33	UniRef90_A0A413YU90	971.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0122043_33	33035.JPJF01000093_gene2257	544.0	0	N/A	N/A
Pfam	UHGV-0122043_33	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0122043_33	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0122043_34	phrog_581	246.2	0	minor head protein	head and packaging
UniRef90	UHGV-0122043_34	UniRef90_A0A413YU28	1149.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0122043_34	1282664.H354_06636	470.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0122043_34	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
structural_annotation	UHGV-0122043_34	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0122043_36	phrog_872	168.5	0	N/A	unknown function
UniRef90	UHGV-0122043_36	UniRef90_A0A413P9Z7	216.0	0	N/A	N/A
eggNOG-mapper	UHGV-0122043_36	573413.Spirs_2170	179.0	0	N/A	N/A
Pfam	UHGV-0122043_36	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0122043_36	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0122043_36	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0122043_37	phrog_2303	132.9	2.8e-39	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0122043_37	1304866.K413DRAFT_0806	137.0	9.97e-38	N/A	N/A
PHROG	UHGV-0122043_38	phrog_422	205.8	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0122043_38	693746.OBV_18090	217.0	0	N/A	N/A
structural_annotation	UHGV-0122043_38	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0122043_40	phrog_541	68.8	8.1e-20	head-tail adaptor	connector
eggNOG-mapper	UHGV-0122043_40	1304866.K413DRAFT_0783	148.0	1.4013e-44	N/A	N/A
PHROG	UHGV-0122043_41	phrog_8710	125.1	2.7e-37	N/A	unknown function
eggNOG-mapper	UHGV-0122043_41	742740.HMPREF9474_03508	124.0	2.87e-35	N/A	N/A
structural_annotation	UHGV-0122043_41	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0122043_42	742740.HMPREF9474_03509	128.0	4.93e-36	N/A	N/A
PHROG	UHGV-0122043_43	phrog_2595	78.5	7.8e-23	head-tail connector protein	connector
UniRef90	UHGV-0122043_43	UniRef90_UPI001D068DAC	136.0	1.7e-38	minor capsid protein	N/A
eggNOG-mapper	UHGV-0122043_43	742740.HMPREF9474_03510	124.0	1.43e-34	N/A	N/A
Pfam	UHGV-0122043_43	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0122043_43	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0122043_44	phrog_820	113.7	1.2e-33	major tail protein	tail
UniRef90	UHGV-0122043_44	UniRef90_T3DDR1	176.0	0	Phage major tail 2 family protein	N/A
eggNOG-mapper	UHGV-0122043_44	1151292.QEW_2426	176.0	0	N/A	N/A
structural_annotation	UHGV-0122043_44	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0122043_45	phrog_8300	67.0	2.6e-19	N/A	unknown function
eggNOG-mapper	UHGV-0122043_45	1151292.QEW_2425	59.3	0.000000000613	N/A	N/A
structural_annotation	UHGV-0122043_45	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0122043_46	phrog_8355	115.9	8.2e-35	N/A	unknown function
UniRef90	UHGV-0122043_46	UniRef90_UPI0006BBA9AA	176.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0122043_46	394503.Ccel_3036	119.0	4.48e-33	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0122043_46	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0122043_46	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0122043_47	phrog_1535	279.4	0	tail length tape measure protein	tail
UniRef90	UHGV-0122043_47	UniRef90_A0A1C5PIN9	496.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0122043_47	33035.JPJF01000093_gene2243	358.0	0	phage tail tape measure protein	N/A
COG	UHGV-0122043_47	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0122043_47	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0122043_48	phrog_1194	81.1	1.2e-23	N/A	unknown function
eggNOG-mapper	UHGV-0122043_48	33035.JPJF01000093_gene2242	153.0	0	N/A	N/A
structural_annotation	UHGV-0122043_48	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0122043_49	phrog_1401	65.5	8.5e-19	N/A	unknown function
UniRef90	UHGV-0122043_49	UniRef90_UPI0007099B7A	69.7	0.00000000000123	N/A	N/A
eggNOG-mapper	UHGV-0122043_49	1294142.CINTURNW_1705	60.8	0.000000000553	N/A	N/A
structural_annotation	UHGV-0122043_49	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0122043_50	phrog_6616	163.1	0	tail protein	tail
UniRef90	UHGV-0122043_50	UniRef90_A0A356C4L7	778.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0122043_50	1294142.CINTURNW_1706	327.0	0	Phage minor structural protein	N/A
COG	UHGV-0122043_50	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0122043_50	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0122043_52	phrog_199	71.0	1.5e-20	holin	lysis
UniRef90	UHGV-0122043_52	UniRef90_A0A356C4Q2	241.0	0	Holin	N/A
eggNOG-mapper	UHGV-0122043_52	483218.BACPEC_01140	213.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0122043_52	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0122043_52	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0122043_52	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0122043_52	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0122043_53	K07273	123.3	2.9e-36	acm; lysozyme	N/A
PHROG	UHGV-0122043_53	phrog_291	97.5	1.9e-28	endolysin	lysis
UniRef90	UHGV-0122043_53	UniRef90_A0A356C4L5	595.0	0	LysM domain-containing protein	N/A
eggNOG-mapper	UHGV-0122043_53	515620.EUBELI_01316	172.0	0	Glycoside Hydrolase Family 25-like lysozyme endolysin	N/A
Pfam	UHGV-0122043_53	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0122043_53	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0122043_53	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
KOfam	UHGV-0122043_54	K07339	41.3	0.000000000027	hicA; mRNA interferase HicA [EC:3.1.-.-]	N/A
PHROG	UHGV-0122043_54	phrog_353	82.0	4.2e-24	toxin	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0122043_54	UniRef90_A0A1H3VXF8	95.9	6.47e-25	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	N/A
eggNOG-mapper	UHGV-0122043_54	1408311.JNJM01000002_gene1308	95.9	1.09e-25	HicA toxin of bacterial toxin-antitoxin,	N/A
Pfam	UHGV-0122043_54	PF07927	N/A	N/A	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
COG	UHGV-0122043_54	COG1724	N/A	N/A	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	N/A
structural_annotation	UHGV-0122043_54	PF07927,COG1724	N/A	N/A	N/A	N/A
KOfam	UHGV-0122043_55	K18843	69.8	6.3e-20	hicB; antitoxin HicB	N/A
PHROG	UHGV-0122043_55	phrog_497	87.1	3.1e-25	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0122043_55	UniRef90_A0A413P9Z2	259.0	0	HicB family protein	N/A
eggNOG-mapper	UHGV-0122043_55	1408311.JNJM01000002_gene1307	179.0	0	HicB_like antitoxin of bacterial toxin-antitoxin system	N/A
Pfam	UHGV-0122043_55	PF15919	N/A	N/A	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
COG	UHGV-0122043_55	COG1598	N/A	N/A	Antitoxin component HicB of the HicAB toxin-antitoxin system	N/A
structural_annotation	UHGV-0122043_55	PF15919,COG1598	N/A	N/A	N/A	N/A