UHGV-0122178 (vOTU-030092)

Viral Genome: UHGV-0122178

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0122178
vOTU ID	vOTU-030092
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_324704
Associated BioSample	SAMN00792044
Viral genome confidence	Confident

Quality assessment
CheckV method	Provirus
CheckV completeness	99.9 (High-quality)
Trimmed provirus	Yes
CheckV viral markers	19
CheckV host markers	4
Recoded stop codon	No

Viral Content
geNomad score	0.9771
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.79
Jumbo phage	No

Genome content
Genome length (bp)	36,424
GC content	41.28%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	48
CDS density	93%
Average CDS length (bps)	707.69
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0122178_1	K14059	206.7	0	int; integrase	N/A
PHROG	UHGV-0122178_1	phrog_1	182.0	0	integrase	integration and excision
UniRef90	UHGV-0122178_1	UniRef90_A0A2N0ULT2	788.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0122178_1	428125.CLOLEP_02743	311.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0122178_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0122178_1	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0122178_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0122178_2	K22299	57.4	3.9e-16	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0122178_2	phrog_8	62.0	1.5e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0122178_2	UniRef90_A0A374NFM5	128.0	9e-38	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0122178_2	1567011.A0A0A7RUJ5_9VIRU	68.9	0.0000000000000138	protein disulfide oxidoreductase activity	N/A
PADLOC	UHGV-0122178_2	retron_type_VI_hth_cluster2_1	45.7	0.000000000002	N/A	Retron
Pfam	UHGV-0122178_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0122178_2	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0122178_4	phrog_10226	179.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0122178_4	431943.CKL_3226	177.0	0	N/A	N/A
structural_annotation	UHGV-0122178_4	COG4127	N/A	N/A	N/A	N/A
PHROG	UHGV-0122178_5	phrog_1914	146.1	2.10195e-43	N/A	unknown function
UniRef90	UHGV-0122178_5	UniRef90_UPI000E543E50	342.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0122178_5	1160721.RBI_I01604	169.0	0	N/A	N/A
Pfam	UHGV-0122178_5	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0122178_5	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0122178_5	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-0122178_6	phrog_2967	42.3	0.000000000012	transcriptional regulator	transcription regulation
UniRef90	UHGV-0122178_6	UniRef90_A0A374ND72	309.0	0	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0122178_6	457412.RSAG_00795	112.0	3.62e-29	sequence-specific DNA binding	N/A
COG	UHGV-0122178_6	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0122178_6	PF13560,MF_00535,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0122178_7	UniRef90_A0A374N1V0	154.0	0	N/A	N/A
eggNOG-mapper	UHGV-0122178_7	171693.BN988_01635	98.2	3.41e-26	N/A	N/A
Pfam	UHGV-0122178_7	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-0122178_7	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0122178_7	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0122178_8	phrog_3773	48.4	0.00000000000015	N/A	unknown function
structural_annotation	UHGV-0122178_8	PF01423,MF_00257,NF041667	N/A	N/A	N/A	N/A
KOfam	UHGV-0122178_9	K15773	49.2	0.00000000000012	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
PHROG	UHGV-0122178_9	phrog_3	48.1	0.00000000000052	transcriptional repressor	transcription regulation
UniRef90	UHGV-0122178_9	UniRef90_A0A374N3U7	132.0	5.39e-39	XRE family transcriptional regulator	N/A
Pfam	UHGV-0122178_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0122178_9	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0122178_9	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0122178_11	UniRef90_A0A2N0ULT9	102.0	4.76e-27	DNA binding domain, excisionase family	N/A
Pfam	UHGV-0122178_11	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0122178_11	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A
COG	UHGV-0122178_11	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
structural_annotation	UHGV-0122178_12	COG1862	N/A	N/A	N/A	N/A
PHROG	UHGV-0122178_14	phrog_408	62.5	7e-18	N/A	unknown function
PHROG	UHGV-0122178_15	phrog_69	344.5	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0122178_15	UniRef90_A0A412L7W2	775.0	0	N/A	N/A
eggNOG-mapper	UHGV-0122178_15	1151292.QEW_2472	373.0	0	N/A	N/A
Pfam	UHGV-0122178_15	PF10926	N/A	N/A	N/A	DUF2800
COG	UHGV-0122178_15	COG2887	N/A	N/A	RecB family exonuclease	N/A
structural_annotation	UHGV-0122178_15	PF10926,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0122178_16	phrog_112	217.4	0	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0122178_16	UniRef90_A0A412UNI7	362.0	0	N/A	N/A
eggNOG-mapper	UHGV-0122178_16	573061.Clocel_0760	238.0	0	N/A	N/A
Pfam	UHGV-0122178_16	PF10991	N/A	N/A	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
structural_annotation	UHGV-0122178_16	PF10991,MF_04153	N/A	N/A	N/A	N/A
KOfam	UHGV-0122178_17	K02334	899.3	0	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	N/A
PHROG	UHGV-0122178_17	phrog_17	412.7	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0122178_17	UniRef90_A0A412UNJ8	1282.0	0	POLAc domain-containing protein	N/A
eggNOG-mapper	UHGV-0122178_17	1296660.S5M5X4_9CAUD	768.0	0	DNA polymerase family A	N/A
Pfam	UHGV-0122178_17	PF00476	N/A	N/A	DNA polymerase family A	DNA_pol_A
structural_annotation	UHGV-0122178_17	PF00476,MF_04101,NF011540,COG0749	N/A	N/A	N/A	N/A
PHROG	UHGV-0122178_18	phrog_256	1066.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0122178_18	UniRef90_UPI001D06E26F	840.0	0	virulence-associated E family protein	N/A
eggNOG-mapper	UHGV-0122178_18	536232.CLM_2670	821.0	0	virulence-associated E family protein	N/A
Pfam	UHGV-0122178_18	PF05272	N/A	N/A	Virulence-associated protein E-like domain	VapE-like_dom
COG	UHGV-0122178_18	COG5545	N/A	N/A	Predicted P-loop ATPase and inactivated derivatives	N/A
structural_annotation	UHGV-0122178_18	PF05272,MF_04000,NF005477,NF040562,COG5545	N/A	N/A	N/A	N/A
PHROG	UHGV-0122178_19	phrog_93	86.3	3.9e-25	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0122178_19	UniRef90_A0A412UNG8	197.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0122178_19	97138.C820_00219	102.0	7.31e-27	VRR-NUC domain-containing protein	N/A
Pfam	UHGV-0122178_19	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0122178_19	PF01870,MF_00130,NF002584,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-0122178_20	K14440	79.6	8.9e-38	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	N/A
PHROG	UHGV-0122178_20	phrog_62	410.2	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0122178_20	UniRef90_A0A412L7W0	909.0	0	ATP-dependent helicase	N/A
eggNOG-mapper	UHGV-0122178_20	97138.C820_00220	630.0	0	snf2 family	N/A
PADLOC	UHGV-0122178_20	ZorD1_00007	88.3	6.9e-26	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
Pfam	UHGV-0122178_20	PF00176	N/A	N/A	SNF2-related domain	SNF2-rel_dom
Pfam	UHGV-0122178_20	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0122178_20	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
structural_annotation	UHGV-0122178_20	PF13872,PF16203,MF_01821,NF041790,COG0553	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0122178_22	PF19824,MF_01506	N/A	N/A	N/A	N/A
KOfam	UHGV-0122178_23	K22300	60.3	4.7e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0122178_23	phrog_8	62.7	9.4e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0122178_23	UniRef90_A0A374N9T4	89.7	2.19e-22	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0122178_23	1341157.RF007C_00125	67.4	0.000000000000571	Cro/C1-type HTH DNA-binding domain	N/A
PADLOC	UHGV-0122178_23	retron_type_VI_hth_cluster2_1	51.0	0.000000000000041	N/A	Retron
Pfam	UHGV-0122178_23	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0122178_23	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0122178_23	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0122178_24	UniRef90_UPI000E4DC4DA	136.0	2.55e-38	helix-turn-helix domain-containing protein	N/A
structural_annotation	UHGV-0122178_24	PF15597	N/A	N/A	N/A	N/A
PHROG	UHGV-0122178_25	phrog_25754	64.8	4.2e-19	N/A	unknown function
eggNOG-mapper	UHGV-0122178_25	97139.C824_00736	71.6	0.00000000000001	N/A	N/A
structural_annotation	UHGV-0122178_25	PF06372,NF041655	N/A	N/A	N/A	N/A
PHROG	UHGV-0122178_27	phrog_36	80.9	1.9e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0122178_27	UniRef90_A0A2N0UXQ6	266.0	0	N/A	N/A
eggNOG-mapper	UHGV-0122178_27	1401067.HMPREF0872_06835	95.9	1.83e-23	N/A	N/A
Pfam	UHGV-0122178_27	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0122178_27	PF07374,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0122178_28	K06909	397.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0122178_28	phrog_3717	144.7	1.54143e-44	terminase large subunit	head and packaging
UniRef90	UHGV-0122178_28	UniRef90_A0A2N0ULW5	1032.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0122178_28	411461.DORFOR_01162	620.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0122178_28	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0122178_28	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0122178_28	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0122178_28	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0122178_28	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0122178_29	phrog_533	325.2	0	portal protein	head and packaging
UniRef90	UHGV-0122178_29	UniRef90_A0A2N0ULU9	840.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0122178_29	1304866.K413DRAFT_3035	472.0	0	N/A	N/A
structural_annotation	UHGV-0122178_29	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0122178_30	phrog_581	319.6	0	minor head protein	head and packaging
UniRef90	UHGV-0122178_30	UniRef90_A0A2N0ULU5	744.0	0	Putative ADP-ribosyltransferase Certhrax	N/A
eggNOG-mapper	UHGV-0122178_30	658655.HMPREF0988_02563	372.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0122178_30	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0122178_30	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0122178_30	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0122178_32	phrog_478	129.3	1.6e-38	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0122178_32	UniRef90_A0A285PT53	146.0	1.03976e-42	Prokaryotic membrane lipoprotein lipid attachment site profile	N/A
eggNOG-mapper	UHGV-0122178_32	478749.BRYFOR_08526	148.0	2.24208e-44	N/A	N/A
PHROG	UHGV-0122178_33	phrog_2616	46.1	0.0000000000011	N/A	unknown function
structural_annotation	UHGV-0122178_33	PF01281	N/A	N/A	N/A	N/A
PHROG	UHGV-0122178_34	phrog_194	101.0	1.5e-29	head scaffolding protein	head and packaging
UniRef90	UHGV-0122178_34	UniRef90_A0A2N0ULW9	351.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0122178_34	742765.HMPREF9457_02126	174.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0122178_34	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0122178_34	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0122178_35	phrog_422	228.6	0	major head protein	head and packaging
eggNOG-mapper	UHGV-0122178_35	693746.OBV_18090	396.0	0	N/A	N/A
structural_annotation	UHGV-0122178_35	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-0122178_36	phrog_541	78.7	6.9e-23	head-tail adaptor	connector
UniRef90	UHGV-0122178_36	UniRef90_A0A371AQT0	108.0	3.9e-28	N/A	N/A
eggNOG-mapper	UHGV-0122178_36	1449050.JNLE01000003_gene3888	80.5	6.82e-18	N/A	N/A
PHROG	UHGV-0122178_37	phrog_3366	74.2	1.7e-21	N/A	unknown function
eggNOG-mapper	UHGV-0122178_37	1449050.JNLE01000003_gene3887	88.6	8.91e-21	N/A	N/A
Pfam	UHGV-0122178_37	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0122178_37	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-0122178_38	phrog_556	118.8	1.7e-35	minor head protein	head and packaging
UniRef90	UHGV-0122178_38	UniRef90_UPI00189BC4F9	184.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0122178_38	1449050.JNLE01000003_gene3886	177.0	0	N/A	N/A
Pfam	UHGV-0122178_38	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0122178_38	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0122178_39	phrog_3266	106.5	1.8e-31	tail completion	connector
eggNOG-mapper	UHGV-0122178_39	1449050.JNLE01000003_gene3885	142.0	1.07003e-41	N/A	N/A
structural_annotation	UHGV-0122178_39	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0122178_40	phrog_3099	148.3	3.64338e-44	N/A	unknown function
eggNOG-mapper	UHGV-0122178_40	1160721.RBI_II00532	232.0	0	N/A	N/A
structural_annotation	UHGV-0122178_40	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0122178_41	phrog_11299	133.8	9.7e-40	N/A	unknown function
eggNOG-mapper	UHGV-0122178_41	1449050.JNLE01000003_gene3883	97.1	8.62e-24	N/A	N/A
structural_annotation	UHGV-0122178_41	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0122178_42	phrog_706	137.4	9.19994e-41	N/A	unknown function
UniRef90	UHGV-0122178_42	UniRef90_A0A2N0ULW2	367.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0122178_42	1160721.RBI_II00530	206.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0122178_42	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0122178_42	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0122178_44	phrog_1535	484.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0122178_44	UniRef90_A0A2N0ULX3	2074.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0122178_44	33035.JPJF01000093_gene2243	354.0	0	phage tail tape measure protein	N/A
COG	UHGV-0122178_44	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0122178_44	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0122178_45	phrog_1194	61.4	1.5e-17	N/A	unknown function
eggNOG-mapper	UHGV-0122178_45	397290.C810_05238	94.7	5.11e-23	N/A	N/A
Pfam	UHGV-0122178_45	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0122178_45	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0122178_46	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0122178_47	phrog_5302	199.8	0	tail protein	tail
UniRef90	UHGV-0122178_47	UniRef90_A0A373XLZ6	545.0	0	N/A	N/A
eggNOG-mapper	UHGV-0122178_47	742740.HMPREF9474_02337	241.0	0	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0122178_47	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
PHROG	UHGV-0122178_48	phrog_5302	68.2	1.2e-19	tail protein	tail
eggNOG-mapper	UHGV-0122178_48	742740.HMPREF9474_02337	75.1	0.00000000000171	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-0122178_48	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A