UHGV-0122191 (vOTU-072881)

Viral Genome: UHGV-0122191

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0122191
vOTU ID	vOTU-072881
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_318700
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.37 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.981
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.92
Jumbo phage	No

Genome content
Genome length (bp)	36,690
GC content	42.65%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	60
CDS density	90%
Average CDS length (bps)	549.10
Total tRNA genes	1
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 88.37)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0122191_1	UniRef90_U2CXQ8	131.0	1.54e-38	Toxin-antitoxin system, antitoxin component, Xre family	N/A
eggNOG-mapper	UHGV-0122191_1	203119.Cthe_1750	52.4	0.0000000391	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0122191_1	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0122191_1	PF13560,TIGR02612,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0122191_3	K14059	267.3	0	int; integrase	N/A
PHROG	UHGV-0122191_3	phrog_1	213.8	0	integrase	integration and excision
UniRef90	UHGV-0122191_3	UniRef90_UPI00164A4E4A	192.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0122191_3	1382358.JHVN01000005_gene3032	166.0	0	Phage integrase family	N/A
Pfam	UHGV-0122191_3	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0122191_3	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0122191_3	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0122191_3	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0122191_4	K01448	116.8	2.6e-34	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0122191_4	phrog_435	190.8	0	endolysin	lysis
UniRef90	UHGV-0122191_4	UniRef90_F7KTY1	306.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0122191_4	411461.DORFOR_01187	267.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0122191_4	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0122191_4	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0122191_4	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0122191_4	PF01520,PF01471,MF_00562,TIGR02883,NF038080,COG0860,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-0122191_5	phrog_443	53.2	0.0000000000000085	holin	lysis
UniRef90	UHGV-0122191_5	UniRef90_UPI001C0212A6	100.0	2.58e-26	holin	N/A
eggNOG-mapper	UHGV-0122191_5	742733.HMPREF9469_01797	84.7	7.09e-21	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0122191_5	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0122191_5	PF16945	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0122191_7	NF040910	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0122191_8	537007.BLAHAN_05250	110.0	1.86e-29	N/A	N/A
PHROG	UHGV-0122191_9	phrog_21765	48.0	0.00000000000018	N/A	unknown function
eggNOG-mapper	UHGV-0122191_9	483218.BACPEC_01141	54.3	0.00000824	N/A	N/A
KOfam	UHGV-0122191_10	K16628	81.3	3.6e-24	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0122191_10	phrog_819	113.7	1.5e-33	tail protein	tail
UniRef90	UHGV-0122191_10	UniRef90_A0A6N2UUB4	179.0	0	Collagen triple helix repeat (20 copies)	N/A
eggNOG-mapper	UHGV-0122191_10	428127.EUBDOL_01210	101.0	2.5e-23	self proteolysis	N/A
Pfam	UHGV-0122191_10	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0122191_10	COG3209	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0122191_11	742733.HMPREF9469_00973	207.0	0	N/A	N/A
structural_annotation	UHGV-0122191_11	PF12733,COG2372	N/A	N/A	N/A	N/A
PHROG	UHGV-0122191_12	phrog_16164	75.8	2.8e-22	N/A	unknown function
eggNOG-mapper	UHGV-0122191_12	33035.JPJF01000093_gene2236	170.0	0	N/A	N/A
structural_annotation	UHGV-0122191_12	PF10651,NF032891	N/A	N/A	N/A	N/A
UniRef90	UHGV-0122191_13	UniRef90_A0A374E9Q0	128.0	3.25e-32	Collagen-like protein	N/A
eggNOG-mapper	UHGV-0122191_13	1235798.C817_04596	110.0	7.2e-25	the current gene model (or a revised gene model) may contain a frame shift	N/A
COG	UHGV-0122191_13	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0122191_13	PF10651,NF007636,COG5456	N/A	N/A	N/A	N/A
PHROG	UHGV-0122191_14	phrog_11037	130.5	1.4e-38	N/A	unknown function
UniRef90	UHGV-0122191_14	UniRef90_A0A6N3GLP8	431.0	0	Phage_lysozyme2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0122191_14	33035.JPJF01000093_gene2240	348.0	0	NlpC/P60 family	N/A
Pfam	UHGV-0122191_14	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0122191_14	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
COG	UHGV-0122191_14	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0122191_14	PF18013,PF05382,NF033742,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0122191_15	phrog_13289	405.2	0	tail protein	tail
UniRef90	UHGV-0122191_15	UniRef90_A0A844KBR1	637.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0122191_15	1235798.C817_02568	471.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0122191_15	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0122191_15	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0122191_15	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
structural_annotation	UHGV-0122191_15	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0122191_16	phrog_33	83.4	4.9e-24	distal tail protein Dit	tail
UniRef90	UHGV-0122191_16	UniRef90_A0A3R6C171	200.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0122191_16	1235798.C817_02569	208.0	0	tail component	N/A
Pfam	UHGV-0122191_16	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0122191_16	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0122191_16	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0122191_16	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
KOfam	UHGV-0122191_17	K20283	41.1	0.0000000000025	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-0122191_17	phrog_5218	422.7	0	N/A	unknown function
UniRef90	UHGV-0122191_17	UniRef90_A0A174CPF9	940.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-0122191_17	1235792.C808_03050	724.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0122191_17	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0122191_17	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0122191_17	PF10145,PF05384,NF033930,COG5280	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0122191_19	1235792.C808_03058	167.0	0	N/A	N/A
structural_annotation	UHGV-0122191_19	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-0122191_20	phrog_88	96.7	2.8e-28	major tail protein	tail
UniRef90	UHGV-0122191_20	UniRef90_A0A7G9G8N6	239.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0122191_20	411459.RUMOBE_00930	219.0	0	N/A	N/A
Pfam	UHGV-0122191_20	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
NCBIFam	UHGV-0122191_20	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0122191_20	PF06488,PF18316,TIGR01603,COG3498	N/A	N/A	N/A	N/A
UniRef90	UHGV-0122191_21	UniRef90_A0A7G9G8N8	124.0	1.64e-34	Phage tail protein	N/A
eggNOG-mapper	UHGV-0122191_21	1235792.C808_03059	149.0	9.31863e-43	phage major tail protein, phi13 family	N/A
COG	UHGV-0122191_21	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0122191_21	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0122191_22	phrog_5	48.5	0.00000000000023	tail completion or Neck1 protein	connector
UniRef90	UHGV-0122191_22	UniRef90_A5ZPL5	140.0	1.92e-40	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0122191_22	97139.C824_05967	190.0	0	Phage protein, HK97 gp10 family	N/A
structural_annotation	UHGV-0122191_22	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0122191_23	phrog_1951	71.0	1.4e-20	head-tail adaptor	connector
UniRef90	UHGV-0122191_23	UniRef90_A5ZPL6	102.0	2.62e-26	Putative phage head-tail adaptor	N/A
eggNOG-mapper	UHGV-0122191_23	97139.C824_05968	129.0	1.99e-37	N/A	N/A
structural_annotation	UHGV-0122191_23	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0122191_24	phrog_5223	78.5	5.8e-23	neck protein	connector
eggNOG-mapper	UHGV-0122191_24	1235792.C808_03062	124.0	4.5e-36	N/A	N/A
structural_annotation	UHGV-0122191_24	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0122191_25	phrog_10	209.0	0	major head protein	head and packaging
UniRef90	UHGV-0122191_25	UniRef90_A0A7G9G8P2	582.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0122191_25	411459.RUMOBE_00935	537.0	0	phage major capsid protein, HK97 family	N/A
Pfam	UHGV-0122191_25	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0122191_25	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0122191_25	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0122191_25	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0122191_26	K01358	129.2	4.7e-38	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0122191_26	phrog_94	194.4	0	head maturation protease	head and packaging
UniRef90	UHGV-0122191_26	UniRef90_A5ZPL9	324.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0122191_26	411459.RUMOBE_00936	324.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0122191_26	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0122191_26	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0122191_26	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0122191_27	phrog_12	287.2	0	portal protein	head and packaging
UniRef90	UHGV-0122191_27	UniRef90_A0A7G9G8P4	714.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0122191_27	411459.RUMOBE_00937	677.0	0	N/A	N/A
Pfam	UHGV-0122191_27	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0122191_27	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0122191_27	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0122191_27	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0122191_28	phrog_9	347.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0122191_28	UniRef90_A0A174CJU0	1008.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-0122191_28	411459.RUMOBE_00938	916.0	0	N/A	N/A
Pfam	UHGV-0122191_28	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0122191_28	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0122191_28	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0122191_28	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0122191_29	phrog_83	116.3	2.2e-34	terminase small subunit	head and packaging
UniRef90	UHGV-0122191_29	UniRef90_A0A174CNJ8	267.0	0	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0122191_29	1235792.C808_03067	232.0	0	Phage terminase, small subunit	N/A
Pfam	UHGV-0122191_29	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
NCBIFam	UHGV-0122191_29	TIGR01558.1	N/A	N/A	phage terminase small subunit P27 family	N/A
COG	UHGV-0122191_29	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0122191_29	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0122191_30	phrog_144	73.2	4.5e-21	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0122191_30	UniRef90_A0A174CMA9	184.0	0	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0122191_30	411459.RUMOBE_00940	174.0	0	HNH endonuclease	N/A
COG	UHGV-0122191_30	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0122191_30	PF05766	N/A	N/A	N/A	N/A
PHROG	UHGV-0122191_31	phrog_36	79.0	7.4e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0122191_31	UniRef90_R6ZAS5	162.0	0	GED domain-containing protein	N/A
eggNOG-mapper	UHGV-0122191_31	476272.RUMHYD_02841	206.0	0	N/A	N/A
structural_annotation	UHGV-0122191_31	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0122191_32	phrog_19011	85.0	4.5e-25	N/A	unknown function
PHROG	UHGV-0122191_36	phrog_29188	107.0	8.4e-32	N/A	unknown function
KOfam	UHGV-0122191_40	K06223	199.5	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0122191_40	phrog_56	165.5	0	DNA methyltransferase	other
UniRef90	UHGV-0122191_40	UniRef90_UPI00148B1899	426.0	0	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-0122191_40	1235799.C818_02654	404.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-0122191_40	MTase_II_00030	256.4	0	Type II methyltransferase	RM
Pfam	UHGV-0122191_40	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-0122191_40	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-0122191_40	PF02086,MF_01872,NF008152,COG0338	N/A	N/A	N/A	N/A
PHROG	UHGV-0122191_41	phrog_37410	86.5	1.6e-25	N/A	unknown function
PHROG	UHGV-0122191_43	phrog_1974	138.8	3.89995e-41	N/A	unknown function
UniRef90	UHGV-0122191_43	UniRef90_A0A2Z4UAW3	271.0	0	Nucleoid-associated protein	N/A
eggNOG-mapper	UHGV-0122191_43	537007.BLAHAN_05629	281.0	0	37-kD nucleoid-associated bacterial protein	N/A
Pfam	UHGV-0122191_43	PF04245	N/A	N/A	37-kD nucleoid-associated bacterial protein	NA37
COG	UHGV-0122191_43	COG3081	N/A	N/A	dsDNA-binding nucleoid-associated protein YejK/NdpA	N/A
structural_annotation	UHGV-0122191_43	PF04245,MF_00730,NF001557,COG3081	N/A	N/A	N/A	N/A
KOfam	UHGV-0122191_45	K03111	141.1	1.29998e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0122191_45	phrog_44	143.3	1.49939e-42	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0122191_45	UniRef90_A0A2Z4UEP8	249.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0122191_45	537007.BLAHAN_04317	226.0	0	N/A	N/A
Pfam	UHGV-0122191_45	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0122191_45	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0122191_45	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0122191_45	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0122191_45	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0122191_46	phrog_7566	122.3	1.4e-36	N/A	unknown function
eggNOG-mapper	UHGV-0122191_46	97139.C824_00037	106.0	3.64e-28	N/A	N/A
eggNOG-mapper	UHGV-0122191_47	1235800.C819_00510	71.2	0.00000000000000403	N/A	N/A
PHROG	UHGV-0122191_48	phrog_531	45.0	0.0000000000021	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0122191_48	UniRef90_A0A2Z4UCZ0	242.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0122191_48	1123325.JHUV01000014_gene41	56.2	0.0000000697	RNA-DNA hybrid ribonuclease activity	N/A
Pfam	UHGV-0122191_48	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0122191_48	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0122191_48	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0122191_52	phrog_3584	160.1	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0122191_52	1280698.AUJS01000007_gene1013	352.0	0	N/A	N/A
structural_annotation	UHGV-0122191_52	PF01446	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0122191_53	97139.C824_05931	45.8	0.00000372	N/A	N/A
structural_annotation	UHGV-0122191_54	COG1965	N/A	N/A	N/A	N/A
PHROG	UHGV-0122191_59	phrog_18248	51.2	0.000000000000019	transcriptional regulator	transcription regulation
UniRef90	UHGV-0122191_59	UniRef90_UPI00156DC4C4	125.0	1.73e-36	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0122191_59	574376.BAMA_16250	61.6	0.0000000000283	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0122191_59	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0122191_59	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0122191_59	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0122191_60	742740.HMPREF9474_02604	57.4	0.000000000807	sequence-specific DNA binding	N/A
COG	UHGV-0122191_60	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A