UHGV-0122246 (vOTU-067677)

Viral Genome: UHGV-0122246

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0122246
vOTU ID	vOTU-067677
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_312076
Associated BioSample	SAMEA37096918
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.88 (High-quality)
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.975
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	45.51
Jumbo phage	No

Genome content
Genome length (bp)	35,969
GC content	36.33%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	49
CDS density	91%
Average CDS length (bps)	671.27
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 94.88)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0122246_1	K06400	360.9	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0122246_1	phrog_95	355.6	0	integrase	integration and excision
UniRef90	UHGV-0122246_1	UniRef90_A0A413YU13	837.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0122246_1	411462.DORLON_00823	449.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0122246_1	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0122246_1	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0122246_1	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0122246_1	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0122246_1	PF00239,PF07508,PF13408,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0122246_2	phrog_1847	342.0	0	N/A	unknown function
UniRef90	UHGV-0122246_2	UniRef90_A0A174S171	675.0	0	Membrane-bound metallopeptidase	N/A
eggNOG-mapper	UHGV-0122246_2	483218.BACPEC_01182	590.0	0	T5orf172	N/A
Pfam	UHGV-0122246_2	PF13455	N/A	N/A	Meiotically up-regulated gene 113	MUG113
COG	UHGV-0122246_2	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0122246_2	PF13250,NF041454	N/A	N/A	N/A	N/A
PHROG	UHGV-0122246_3	phrog_3845	68.7	1.2e-19	N/A	unknown function
UniRef90	UHGV-0122246_3	UniRef90_UPI0019563C69	85.9	3.85e-16	PH domain-containing protein	N/A
eggNOG-mapper	UHGV-0122246_3	768710.DesyoDRAFT_5205	112.0	4.32e-28	PFAM Tellurite resistance protein TerB	N/A
COG	UHGV-0122246_3	COG3793	N/A	N/A	Tellurite resistance protein TerB	N/A
PHROG	UHGV-0122246_4	phrog_20886	46.5	0.00000000000045	N/A	unknown function
UniRef90	UHGV-0122246_4	UniRef90_A0A660M5N1	50.4	0.00000161	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0122246_4	476272.RUMHYD_02825	54.3	0.0000000334	N/A	N/A
structural_annotation	UHGV-0122246_4	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-0122246_5	K22299	59.3	9.8e-17	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0122246_5	phrog_8	70.5	3.3e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0122246_5	UniRef90_A0A413YU20	233.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0122246_5	553973.CLOHYLEM_07297	87.8	8.91e-21	Transcriptional	N/A
PADLOC	UHGV-0122246_5	retron_type_VI_hth_cluster2_1	53.2	0.0000000000000057	N/A	Retron
Pfam	UHGV-0122246_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0122246_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0122246_5	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0122246_6	K07729	40.2	0.000000000074	K07729; putative transcriptional regulator	N/A
UniRef90	UHGV-0122246_6	UniRef90_A0A356C6B4	116.0	2.95e-32	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0122246_6	706433.HMPREF9430_01294	82.8	1.21e-19	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0122246_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
PHROG	UHGV-0122246_7	phrog_585	121.4	5.3e-36	N/A	unknown function
UniRef90	UHGV-0122246_7	UniRef90_UPI001C66A3AC	132.0	2.03e-37	N/A	N/A
eggNOG-mapper	UHGV-0122246_7	1035189.HMPREF9954_1966	125.0	2.78e-35	N/A	N/A
Pfam	UHGV-0122246_7	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-0122246_7	PF10711,MF_01819,TIGR03433,COG3432	N/A	N/A	N/A	N/A
PHROG	UHGV-0122246_8	phrog_20040	49.3	0.00000000000006	N/A	unknown function
eggNOG-mapper	UHGV-0122246_8	1538644.KO02_12130	97.8	6.79e-26	N/A	N/A
PHROG	UHGV-0122246_10	phrog_674	173.7	0	N/A	unknown function
UniRef90	UHGV-0122246_10	UniRef90_A0A3R6B153	165.0	1.4013e-45	N/A	N/A
eggNOG-mapper	UHGV-0122246_10	357809.Cphy_2989	150.0	7.07e-40	N/A	N/A
Pfam	UHGV-0122246_10	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0122246_10	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0122246_11	phrog_155	77.0	3e-22	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0122246_11	UniRef90_A0A7C6JWG7	177.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-0122246_11	1415775.U729_2586	120.0	6.61e-31	ERF superfamily	N/A
Pfam	UHGV-0122246_11	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0122246_11	PF04404	N/A	N/A	N/A	N/A
PHROG	UHGV-0122246_12	phrog_72	56.2	4.8e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0122246_12	UniRef90_A0A285PU94	156.0	4.2039e-45	Recombinase NinB	N/A
eggNOG-mapper	UHGV-0122246_12	411490.ANACAC_00804	143.0	9.37006e-41	N/A	N/A
structural_annotation	UHGV-0122246_12	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0122246_13	phrog_7566	86.3	2.4e-25	N/A	unknown function
UniRef90	UHGV-0122246_13	UniRef90_A0A3D5LSW4	171.0	0	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-0122246_13	1507.HMPREF0262_00433	62.0	0.0000000000216	N/A	N/A
KOfam	UHGV-0122246_14	K01160	53.7	0.0000000000000065	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0122246_14	phrog_1682	88.3	1.1e-25	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0122246_14	UniRef90_A0A6N7WNE3	184.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0122246_14	33035.JPJF01000071_gene4466	130.0	5.48e-38	crossover junction endodeoxyribonuclease activity	N/A
COG	UHGV-0122246_14	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0122246_14	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0122246_15	phrog_19658	50.3	0.000000000000038	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0122246_15	UniRef90_E4QBK3	83.2	1.19e-17	Putative transcriptional regulator, GntR family	N/A
eggNOG-mapper	UHGV-0122246_15	796940.HMPREF9628_00167	135.0	9.86e-37	N/A	N/A
COG	UHGV-0122246_15	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0122246_15	PF09202,MF_01819,TIGR01610,COG1959	N/A	N/A	N/A	N/A
PHROG	UHGV-0122246_17	phrog_17690	128.0	3.4e-38	N/A	unknown function
UniRef90	UHGV-0122246_17	UniRef90_A0A6L5XWF4	108.0	6.24e-28	3-dehydroquinate synthase	N/A
eggNOG-mapper	UHGV-0122246_17	33035.JPJF01000123_gene2433	98.6	9.52e-25	N/A	N/A
UniRef90	UHGV-0122246_19	UniRef90_UPI001D072F7E	73.6	0.000000000001	N/A	N/A
KOfam	UHGV-0122246_22	K06223	200.1	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0122246_22	phrog_56	162.8	0	DNA methyltransferase	other
UniRef90	UHGV-0122246_22	UniRef90_UPI001D09087B	391.0	0	DNA adenine methylase	N/A
eggNOG-mapper	UHGV-0122246_22	610130.Closa_0735	378.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-0122246_22	MTase_II_00030	278.2	0	Type II methyltransferase	RM
Pfam	UHGV-0122246_22	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-0122246_22	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-0122246_22	PF02086,MF_01872,NF008152,COG0338	N/A	N/A	N/A	N/A
PHROG	UHGV-0122246_24	phrog_36	56.7	5.8e-16	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0122246_24	397290.C810_01391	103.0	3.09e-26	N/A	N/A
structural_annotation	UHGV-0122246_24	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0122246_25	phrog_10865	42.0	0.0000000000063	N/A	unknown function
AcrCatalog	UHGV-0122246_25	cluster_211731	147.0	1.30321e-43	NA	N/A
Pfam	UHGV-0122246_25	PF20505	N/A	N/A	N/A	DUF6731
structural_annotation	UHGV-0122246_25	PF20505	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0122246_26	cluster_138565	101.0	3.98e-29	NA	N/A
structural_annotation	UHGV-0122246_26	PF15968	N/A	N/A	N/A	N/A
KOfam	UHGV-0122246_27	K07474	165.8	0	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0122246_27	phrog_51	166.1	0	terminase small subunit	head and packaging
UniRef90	UHGV-0122246_27	UniRef90_A0A356C6K0	328.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0122246_27	1499683.CCFF01000014_gene3916	160.0	0	Terminase small subunit	N/A
Pfam	UHGV-0122246_27	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0122246_27	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0122246_27	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-0122246_28	K06909	95.5	7e-28	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0122246_28	phrog_2	67.4	3.4e-19	terminase large subunit	head and packaging
UniRef90	UHGV-0122246_28	UniRef90_A0A413YU24	914.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0122246_28	1294142.CINTURNW_1023	515.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0122246_28	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0122246_28	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0122246_28	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0122246_29	phrog_533	291.8	0	portal protein	head and packaging
UniRef90	UHGV-0122246_29	UniRef90_A0A3D5LTG9	804.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0122246_29	33035.JPJF01000093_gene2257	571.0	0	N/A	N/A
Pfam	UHGV-0122246_29	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0122246_29	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0122246_30	phrog_581	241.5	0	minor head protein	head and packaging
UniRef90	UHGV-0122246_30	UniRef90_A0A3D5LQU4	621.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0122246_30	33035.JPJF01000093_gene2255	439.0	0	N/A	N/A
Pfam	UHGV-0122246_30	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0122246_30	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-0122246_30	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0122246_32	phrog_872	81.4	1.4e-23	N/A	unknown function
eggNOG-mapper	UHGV-0122246_32	397290.C810_05225	120.0	1.81e-33	N/A	N/A
dbAPIS	UHGV-0122246_32	APIS052	N/A	N/A	N/A	N/A
PHROG	UHGV-0122246_33	phrog_2303	137.2	1.3e-40	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0122246_33	1298920.KI911353_gene4851	140.0	6.77e-39	N/A	N/A
PHROG	UHGV-0122246_34	phrog_422	358.6	0	major head protein	head and packaging
UniRef90	UHGV-0122246_34	UniRef90_A0A356C4N2	558.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-0122246_34	742740.HMPREF9474_03505	473.0	0	N/A	N/A
PHROG	UHGV-0122246_35	phrog_1378	74.5	1.1e-21	N/A	unknown function
eggNOG-mapper	UHGV-0122246_35	742740.HMPREF9474_03506	70.9	0.0000000000000131	N/A	N/A
PHROG	UHGV-0122246_36	phrog_541	69.0	7.4e-20	head-tail adaptor	connector
eggNOG-mapper	UHGV-0122246_36	483218.BACPEC_01153	145.0	1.44334e-43	N/A	N/A
PHROG	UHGV-0122246_37	phrog_8710	127.6	4.5e-38	N/A	unknown function
eggNOG-mapper	UHGV-0122246_37	33035.JPJF01000093_gene2249	107.0	4.88e-29	N/A	N/A
structural_annotation	UHGV-0122246_37	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0122246_38	phrog_556	49.6	0.000000000000061	minor head protein	head and packaging
eggNOG-mapper	UHGV-0122246_38	742740.HMPREF9474_03509	134.0	6.74e-39	N/A	N/A
PHROG	UHGV-0122246_39	phrog_2595	89.5	3.3e-26	head-tail connector protein	connector
UniRef90	UHGV-0122246_39	UniRef90_UPI001D068DAC	142.0	3.89e-41	minor capsid protein	N/A
eggNOG-mapper	UHGV-0122246_39	742740.HMPREF9474_03510	134.0	1.01e-38	N/A	N/A
Pfam	UHGV-0122246_39	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0122246_39	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0122246_40	phrog_820	109.6	2.2e-32	major tail protein	tail
UniRef90	UHGV-0122246_40	UniRef90_T3DDR1	181.0	0	Phage major tail 2 family protein	N/A
eggNOG-mapper	UHGV-0122246_40	1151292.QEW_2426	181.0	0	N/A	N/A
structural_annotation	UHGV-0122246_40	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0122246_41	phrog_8300	71.8	7.6e-21	N/A	unknown function
eggNOG-mapper	UHGV-0122246_41	1151292.QEW_2425	70.1	0.0000000000000379	N/A	N/A
structural_annotation	UHGV-0122246_41	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0122246_42	phrog_8355	101.3	3.2e-30	N/A	unknown function
UniRef90	UHGV-0122246_42	UniRef90_UPI0006BBA9AA	144.0	3.3505e-42	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0122246_42	394503.Ccel_3036	119.0	7.18e-33	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0122246_42	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0122246_42	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0122246_43	phrog_1535	277.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0122246_43	UniRef90_A0A1C5PIN9	499.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0122246_43	33035.JPJF01000093_gene2243	366.0	0	phage tail tape measure protein	N/A
COG	UHGV-0122246_43	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0122246_43	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0122246_44	phrog_1194	77.3	1.9e-22	N/A	unknown function
eggNOG-mapper	UHGV-0122246_44	33035.JPJF01000093_gene2242	155.0	0	N/A	N/A
structural_annotation	UHGV-0122246_44	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0122246_45	phrog_1401	57.7	2.1e-16	N/A	unknown function
UniRef90	UHGV-0122246_45	UniRef90_UPI001A9A8A65	74.3	0.0000000000000187	N/A	N/A
eggNOG-mapper	UHGV-0122246_45	1391647.AVSV01000003_gene1820	76.6	3.95e-16	N/A	N/A
structural_annotation	UHGV-0122246_45	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0122246_46	phrog_6616	149.2	2.66247e-44	tail protein	tail
UniRef90	UHGV-0122246_46	UniRef90_UPI001BA4B99A	174.0	1.64e-40	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0122246_46	552396.HMPREF0863_01647	139.0	1.96e-30	Phage minor structural protein	N/A
COG	UHGV-0122246_46	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0122246_46	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0122246_47	phrog_2566	47.0	0.00000000000039	N/A	unknown function
eggNOG-mapper	UHGV-0122246_47	702450.CUW_0544	49.3	0.000000873	N/A	N/A
PHROG	UHGV-0122246_48	phrog_199	75.0	9.5e-22	holin	lysis
UniRef90	UHGV-0122246_48	UniRef90_A0A3B8UJ75	247.0	0	Holin	N/A
eggNOG-mapper	UHGV-0122246_48	483218.BACPEC_01140	214.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0122246_48	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0122246_48	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0122246_48	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0122246_48	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0122246_49	K07273	91.7	1.1e-26	acm; lysozyme	N/A
PHROG	UHGV-0122246_49	phrog_291	78.1	1.5e-22	endolysin	lysis
UniRef90	UHGV-0122246_49	UniRef90_A0A174PB89	659.0	0	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
eggNOG-mapper	UHGV-0122246_49	469596.HMPREF9488_01959	138.0	5.44e-35	Glycosyl hydrolase family 25	N/A
Pfam	UHGV-0122246_49	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0122246_49	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0122246_49	PF01183,PF11623,COG3757,COG2139	N/A	N/A	N/A	N/A