UHGV-0123305 (vOTU-066592)

Viral Genome: UHGV-0123305

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0123305
vOTU ID	vOTU-066592
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_310165
Associated BioSample	SAMEA37090918
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9726
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.09
Jumbo phage	No

Genome content
Genome length (bp)	40,187
GC content	28.05%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	69
CDS density	93%
Average CDS length (bps)	541.52
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0123305_2	phrog_2329	43.4	0.0000000000034	N/A	unknown function
PHROG	UHGV-0123305_3	phrog_374	71.7	4.1e-36	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0123305_3	UniRef90_UPI00026C8333	127.0	4.36e-34	AP2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0123305_3	1196324.A374_08819	105.0	1.5e-26	N/A	N/A
structural_annotation	UHGV-0123305_3	PF00847	N/A	N/A	N/A	N/A
KOfam	UHGV-0123305_4	K01447	123.7	1.9e-36	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0123305_4	phrog_1493	130.0	2e-38	endolysin	lysis
UniRef90	UHGV-0123305_4	UniRef90_R5YUL1	507.0	0	N-acetylmuramoyl-L-alanine amidase cwlL (Cellwall hydrolase) (Autolysin)	N/A
eggNOG-mapper	UHGV-0123305_4	1120998.AUFC01000016_gene8	159.0	8.40779e-45	Ami_2	N/A
Pfam	UHGV-0123305_4	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-0123305_4	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0123305_4	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-0123305_4	PF01510,PF01471,MF_04111,NF008758,COG5632,COG3409	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0123305_5	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0123305_7	phrog_2310	50.3	0.000000000000023	N/A	unknown function
eggNOG-mapper	UHGV-0123305_7	632245.CLP_2682	49.3	0.000000431	N/A	N/A
eggNOG-mapper	UHGV-0123305_11	509191.AEDB02000102_gene3725	63.9	0.0000000135	RHS repeat-associated core domain	N/A
Pfam	UHGV-0123305_11	PF07591	N/A	N/A	Pretoxin HINT domain	PT-HINT
NCBIFam	UHGV-0123305_11	TIGR01445.1	N/A	N/A	intein N-terminal splicing region	N/A
COG	UHGV-0123305_11	COG1372	N/A	N/A	Intein/homing endonuclease	N/A
PHROG	UHGV-0123305_13	phrog_13879	83.2	3.2e-26	N/A	unknown function
eggNOG-mapper	UHGV-0123305_13	1122919.KB905559_gene1344	73.6	0.0000000000745	N/A	N/A
structural_annotation	UHGV-0123305_13	PF14594,PF03256,NF033848,COG4379,COG5156	N/A	N/A	N/A	N/A
PHROG	UHGV-0123305_14	phrog_1194	67.7	1.6e-19	N/A	unknown function
structural_annotation	UHGV-0123305_14	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0123305_15	phrog_1535	125.5	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0123305_15	1232449.BAHV02000010_gene2723	89.4	0.00000000000000463	domain protein	N/A
COG	UHGV-0123305_15	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0123305_15	PF09486,NF038178,COG1382	N/A	N/A	N/A	N/A
PHROG	UHGV-0123305_16	phrog_7940	139.7	1.79997e-41	N/A	unknown function
UniRef90	UHGV-0123305_16	UniRef90_A0A7G6E7X2	211.0	0	Phage repressor protein	N/A
eggNOG-mapper	UHGV-0123305_16	1449126.JQKL01000006_gene832	211.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0123305_16	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
COG	UHGV-0123305_16	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0123305_16	PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
PHROG	UHGV-0123305_19	phrog_26308	73.4	3.3e-21	N/A	unknown function
UniRef90	UHGV-0123305_19	UniRef90_A0A1Q6JN93	113.0	1.7e-27	zinc_ribbon_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0123305_19	1042156.CXIVA_15870	101.0	9.02e-23	sh3 domain protein	N/A
COG	UHGV-0123305_19	COG3103	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0123305_19	PF11355,PF13828,MF_00791,TIGR02588,COG5633	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0123305_21	PF12363	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0123305_22	445972.ANACOL_01851	85.9	3.13e-19	N/A	N/A
structural_annotation	UHGV-0123305_22	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0123305_23	PF05657	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0123305_24	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0123305_25	445972.ANACOL_01848	55.1	0.0000000422	N/A	N/A
structural_annotation	UHGV-0123305_25	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0123305_26	445972.ANACOL_01847	48.9	0.00000515	N/A	N/A
structural_annotation	UHGV-0123305_26	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0123305_27	phrog_247	284.0	0	major head protein	head and packaging
UniRef90	UHGV-0123305_27	UniRef90_R7ITV5	726.0	0	Putative prophage Lp2 protein 40	N/A
eggNOG-mapper	UHGV-0123305_27	445335.CBN_1379	308.0	0	N/A	N/A
COG	UHGV-0123305_27	COG1106	N/A	N/A	ATPase/GTPase, AAA15 family	N/A
structural_annotation	UHGV-0123305_27	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0123305_28	phrog_172	78.3	1.4e-22	head scaffolding protein	head and packaging
UniRef90	UHGV-0123305_28	UniRef90_A0A3D1PKZ2	65.1	0.000000000883	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0123305_28	1423724.BAMM01000012_gene1365	56.6	0.000000234	N/A	N/A
Pfam	UHGV-0123305_28	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-0123305_28	PF14265	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0123305_29	cluster_73853	37.4	0.000000106	NA	N/A
UniRef90	UHGV-0123305_31	UniRef90_R7IWF4	416.0	0	SPP1 gp7 family phage putative head morphogenesis protein	N/A
eggNOG-mapper	UHGV-0123305_31	665956.HMPREF1032_03615	57.4	0.00000256	cell adhesion	N/A
COG	UHGV-0123305_31	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0123305_32	phrog_4502	99.9	3.4e-29	N/A	unknown function
eggNOG-mapper	UHGV-0123305_32	268407.PWYN_12400	110.0	2.79e-30	N/A	N/A
structural_annotation	UHGV-0123305_32	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-0123305_33	phrog_64	226.0	0	portal protein	head and packaging
UniRef90	UHGV-0123305_33	UniRef90_R7IUE9	897.0	0	SPP1 family phage portal protein	N/A
eggNOG-mapper	UHGV-0123305_33	665956.HMPREF1032_03614	246.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0123305_33	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0123305_33	PF05133,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0123305_34	K06909	225.2	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0123305_34	phrog_5653	161.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0123305_34	UniRef90_A0A1M6MYR1	340.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0123305_34	203119.Cthe_2474	332.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0123305_34	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0123305_34	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
COG	UHGV-0123305_34	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0123305_34	PF17288,PF04466,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0123305_35	K06909	132.6	4.4e-39	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0123305_35	phrog_3717	94.8	9.5e-28	terminase large subunit	head and packaging
UniRef90	UHGV-0123305_35	UniRef90_A0A1C0BQF7	181.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0123305_35	1121344.JHZO01000003_gene977	178.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0123305_35	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0123305_35	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0123305_35	PF04466	N/A	N/A	N/A	N/A
PHROG	UHGV-0123305_36	phrog_2412	80.2	2.8e-23	N/A	unknown function
UniRef90	UHGV-0123305_36	UniRef90_UPI000427CABE	67.8	0.00000000000616	KGG domain-containing protein	N/A
eggNOG-mapper	UHGV-0123305_36	1122981.AUME01000026_gene531	67.8	0.00000000000103	N/A	N/A
PHROG	UHGV-0123305_37	phrog_9479	183.9	0	N/A	unknown function
structural_annotation	UHGV-0123305_37	PF15529	N/A	N/A	N/A	N/A
PHROG	UHGV-0123305_40	phrog_940	360.6	0	nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0123305_40	UniRef90_A0A843HIS8	461.0	0	N/A	N/A
eggNOG-mapper	UHGV-0123305_40	1232449.BAHV02000018_gene1534	377.0	0	N/A	N/A
PADLOC	UHGV-0123305_40	MTase_II_00015	80.5	2.8e-23	Type II methyltransferase	RM
Pfam	UHGV-0123305_40	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0123305_40	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-0123305_40	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0123305_40	PF14386,PF02195,TIGR00180	N/A	N/A	N/A	N/A
PHROG	UHGV-0123305_43	phrog_248	43.3	0.000000000004	transcriptional activator	transcription regulation
UniRef90	UHGV-0123305_43	UniRef90_UPI0013E9353F	85.9	5.45e-19	nitroreductase	N/A
eggNOG-mapper	UHGV-0123305_43	573061.Clocel_2449	59.3	0.00000000186	N/A	N/A
Pfam	UHGV-0123305_43	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0123305_43	PF08281,MF_00674,TIGR01636,COG1191	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0123305_45	PF14001,MF_01194,TIGR03318,COG5475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0123305_50	PF09871,TIGR00739	N/A	N/A	N/A	N/A
KOfam	UHGV-0123305_53	K01160	43.0	0.000000000013	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0123305_53	phrog_34	51.6	0.000000000000022	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0123305_53	UniRef90_A0A151B7Z2	122.0	2.06e-33	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0123305_53	525919.Apre_0813	108.0	1.03e-28	Endodeoxyribonuclease RusA	N/A
COG	UHGV-0123305_53	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0123305_53	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0123305_54	phrog_4973	50.4	0.000000000000037	N/A	unknown function
UniRef90	UHGV-0123305_54	UniRef90_A0A843HM15	66.2	0.00000000000108	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0123305_54	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-0123305_54	PF14090,NF008549,COG4738	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0123305_55	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0123305_56	phrog_8489	251.0	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0123305_56	UniRef90_UPI001D0B3316	226.0	0	replisome organizer	N/A
eggNOG-mapper	UHGV-0123305_56	1139219.I569_00860	198.0	0	DnaD domain protein	N/A
COG	UHGV-0123305_56	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0123305_56	PF09681,TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-0123305_58	phrog_72	58.7	3.8e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0123305_58	UniRef90_A0A8D9PDS2	104.0	6.24e-25	NinB protein	N/A
eggNOG-mapper	UHGV-0123305_58	445972.ANACOL_01825	98.6	1.68e-23	N/A	N/A
structural_annotation	UHGV-0123305_58	PF05772,NF007281	N/A	N/A	N/A	N/A
KOfam	UHGV-0123305_59	K03111	135.2	7.6e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0123305_59	phrog_44	137.5	9.19994e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0123305_59	UniRef90_R5Z2P9	182.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0123305_59	1291050.JAGE01000001_gene1719	162.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0123305_59	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0123305_59	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0123305_59	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0123305_59	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0123305_59	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0123305_60	phrog_124	97.6	1.5e-28	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0123305_60	UniRef90_A0A7X7HFU7	295.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0123305_60	1329516.JPST01000033_gene2854	79.7	0.0000000000000117	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	N/A
Pfam	UHGV-0123305_60	PF13479	N/A	N/A	AAA domain	AAA_24
COG	UHGV-0123305_60	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-0123305_60	PF13479,MF_00348,TIGR01618,COG0468	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0123305_65	PF09035,NF040990,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0123305_66	K07741	140.0	3.80004e-41	antB; anti-repressor protein	N/A
PHROG	UHGV-0123305_66	phrog_130	265.1	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0123305_66	UniRef90_E6LK70	306.0	0	Phage antirepressor protein	N/A
eggNOG-mapper	UHGV-0123305_66	887325.HMPREF0381_0355	306.0	0	Phage antirepressor protein KilAC domain	N/A
Pfam	UHGV-0123305_66	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0123305_66	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0123305_66	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0123305_66	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
UniRef90	UHGV-0123305_67	UniRef90_R5ZN14	134.0	4.47e-40	HTH_8 domain-containing protein	N/A
eggNOG-mapper	UHGV-0123305_67	431943.CKL_2015	52.4	0.0000000426	N/A	N/A
Pfam	UHGV-0123305_67	PF02954	N/A	N/A	Bacterial regulatory protein, Fis family	HTH_8
structural_annotation	UHGV-0123305_67	PF05339,NF007271,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0123305_68	K01356	125.3	2.4e-37	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0123305_68	phrog_4	81.3	7.7e-25	transcriptional repressor	transcription regulation
UniRef90	UHGV-0123305_68	UniRef90_R5YSE6	653.0	0	Peptidase_S24 domain-containing protein	N/A
eggNOG-mapper	UHGV-0123305_68	1194526.A284_08095	102.0	4.66e-23	Peptidase S24-like	N/A
Pfam	UHGV-0123305_68	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0123305_68	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0123305_68	PF00717,PF01381,MF_00015,TIGR00498,NF010465,COG1974,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0123305_69	K14059	211.5	0	int; integrase	N/A
PHROG	UHGV-0123305_69	phrog_1	194.2	0	integrase	integration and excision
UniRef90	UHGV-0123305_69	UniRef90_UPI001E00B77B	166.0	1.68156e-44	site-specific integrase	N/A
eggNOG-mapper	UHGV-0123305_69	428126.CLOSPI_00819	154.0	1.33e-40	Phage integrase family	N/A
Pfam	UHGV-0123305_69	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0123305_69	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0123305_69	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0123305_69	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A