UHGV-0124061 (vOTU-072322)

Viral Genome: UHGV-0124061

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0124061
vOTU ID	vOTU-072322
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_321002
Associated BioSample	SAMN00791991
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.9 (High-quality)
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9403
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	68.28
Jumbo phage	No

Genome content
Genome length (bp)	40,651
GC content	48.21%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	58
CDS density	89%
Average CDS length (bps)	620.48
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0124061_1	phrog_19071	66.4	3.5e-19	N/A	unknown function
UniRef90	UHGV-0124061_1	UniRef90_A0A067H892	86.7	4.52e-19	N/A	N/A
eggNOG-mapper	UHGV-0124061_1	243265.plu3215	87.8	2.3e-20	N/A	N/A
structural_annotation	UHGV-0124061_1	PF02452,NF007386,COG2337	N/A	N/A	N/A	N/A
Pfam	UHGV-0124061_2	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
PHROG	UHGV-0124061_3	phrog_236	54.6	0.0000000000000028	nucleotide kinase	other
eggNOG-mapper	UHGV-0124061_3	742823.HMPREF9465_01256	60.8	0.00000000108	N/A	N/A
Pfam	UHGV-0124061_3	PF11753	N/A	N/A	N/A	DUF3310
KOfam	UHGV-0124061_4	K03111	157.2	0	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0124061_4	phrog_44	130.5	1.3e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0124061_4	UniRef90_A0A3D4G7A5	210.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0124061_4	316067.Geob_3793	127.0	3.44e-36	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0124061_4	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0124061_4	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0124061_4	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0124061_4	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0124061_4	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0124061_12	K22300	63.4	5.2e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0124061_12	phrog_4	91.7	8.7e-27	transcriptional repressor	transcription regulation
UniRef90	UHGV-0124061_12	UniRef90_A0A2J0T1N5	74.3	0.000000000000856	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-0124061_12	1051646.VITU9109_21144	64.3	0.000000000521	Transcriptional regulator	N/A
Pfam	UHGV-0124061_12	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0124061_12	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0124061_12	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
structural_annotation	UHGV-0124061_12	PF00717,PF01381,MF_00015,TIGR00498,COG2932	N/A	N/A	N/A	N/A
KOfam	UHGV-0124061_16	K06919	71.5	9.5e-21	K06919; putative DNA primase/helicase	N/A
PHROG	UHGV-0124061_16	phrog_2249	318.3	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0124061_16	UniRef90_A0A6L6YKY2	1012.0	0	N/A	N/A
eggNOG-mapper	UHGV-0124061_16	765910.MARPU_09580	304.0	0	Phage plasmid primase P4 family	N/A
Pfam	UHGV-0124061_16	PF13362	N/A	N/A	Toprim domain	Toprim_3
Pfam	UHGV-0124061_16	PF19263	N/A	N/A	N/A	DUF5906
COG	UHGV-0124061_16	COG3378	N/A	N/A	DNA primase, phage- or plasmid-associated	N/A
structural_annotation	UHGV-0124061_16	PF05272,PF03288,MF_04000,NF011296,TIGR00646,COG4643,COG3378	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0124061_18	PF08281,MF_00245,NF007225,COG1595	N/A	N/A	N/A	N/A
KOfam	UHGV-0124061_23	K07451	47.4	0.0000000000004	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0124061_23	phrog_2323	116.2	1e-34	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0124061_23	UniRef90_A0A3D3SJH3	295.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0124061_23	1501230.ET33_21195	156.0	0	HNH nucleases	N/A
AcrCatalog	UHGV-0124061_23	cluster_19695	78.6	2.5e-21	NA	N/A
Pfam	UHGV-0124061_23	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0124061_23	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0124061_23	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0124061_24	phrog_83	66.5	2.2e-19	terminase small subunit	head and packaging
UniRef90	UHGV-0124061_24	UniRef90_A0A2Z6GBX9	72.0	0.00000000000149	Terminase, small subunit	N/A
eggNOG-mapper	UHGV-0124061_24	1485544.JQKP01000008_gene1674	72.0	0.000000000000249	Phage terminase, small subunit	N/A
Pfam	UHGV-0124061_24	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0124061_24	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
PHROG	UHGV-0124061_25	phrog_9	452.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0124061_25	UniRef90_A0A6L6YIT6	1060.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0124061_25	1485544.JQKP01000008_gene1675	585.0	0	Terminase	N/A
Pfam	UHGV-0124061_25	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0124061_25	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0124061_25	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0124061_25	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0124061_26	phrog_12	276.3	0	portal protein	head and packaging
UniRef90	UHGV-0124061_26	UniRef90_A0A6L6YIJ9	749.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0124061_26	742821.HMPREF9464_01833	325.0	0	Phage portal protein	N/A
Pfam	UHGV-0124061_26	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0124061_26	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0124061_26	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0124061_26	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0124061_27	K06904	142.2	4.99983e-42	N/A	N/A
PHROG	UHGV-0124061_27	phrog_80	142.9	2.79979e-42	head maturation protease	head and packaging
UniRef90	UHGV-0124061_27	UniRef90_A0A6L6YJM7	425.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0124061_27	1147158.K7PKL4_9CAUD	144.0	6.10001e-40	peptidase activity	N/A
Pfam	UHGV-0124061_27	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0124061_27	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
structural_annotation	UHGV-0124061_27	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0124061_28	phrog_10	156.4	0	major head protein	head and packaging
UniRef90	UHGV-0124061_28	UniRef90_A0A6L6YL65	712.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0124061_28	279238.Saro_0649	174.0	0	capsid protein	N/A
Pfam	UHGV-0124061_28	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0124061_28	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0124061_28	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0124061_28	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0124061_29	phrog_40	44.5	0.0000000000024	head-tail adaptor Ad1	connector
eggNOG-mapper	UHGV-0124061_29	742821.HMPREF9464_01830	61.2	0.000000000131	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0124061_29	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0124061_29	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0124061_29	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0124061_30	phrog_25	46.1	0.00000000000089	head closure Hc1	connector
UniRef90	UHGV-0124061_30	UniRef90_UPI0007E2F3D8	74.7	0.00000000000000526	phage head closure protein	N/A
eggNOG-mapper	UHGV-0124061_30	742821.HMPREF9464_01829	86.7	2.98e-20	Phage head-tail joining protein	N/A
Pfam	UHGV-0124061_30	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-0124061_30	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0124061_31	phrog_879	93.5	2.7e-27	tail completion or Neck1 protein	connector
eggNOG-mapper	UHGV-0124061_31	1407493.U5P416_9CAUD	62.8	0.000000000592	N/A	N/A
structural_annotation	UHGV-0124061_31	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0124061_32	phrog_209	87.3	1.9e-25	portal protein	head and packaging
eggNOG-mapper	UHGV-0124061_32	1082705.JIBP01000010_gene163	104.0	1.69e-25	N/A	N/A
structural_annotation	UHGV-0124061_32	PF09646	N/A	N/A	N/A	N/A
PHROG	UHGV-0124061_33	phrog_165	627.2	0	tail sheath	tail
UniRef90	UHGV-0124061_33	UniRef90_A0A3D3SFM4	822.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0124061_33	742821.HMPREF9464_01827	525.0	0	tail sheath	N/A
Pfam	UHGV-0124061_33	PF04984	N/A	N/A	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
Pfam	UHGV-0124061_33	PF17482	N/A	N/A	Phage tail sheath C-terminal domain	Phage_sheath_1C
COG	UHGV-0124061_33	COG4386	N/A	N/A	Mu-like prophage tail sheath protein gpL	N/A
structural_annotation	UHGV-0124061_33	PF10758,COG4386	N/A	N/A	N/A	N/A
PHROG	UHGV-0124061_34	phrog_185	100.7	1e-29	tail tube protein	tail
UniRef90	UHGV-0124061_34	UniRef90_A0A6L6YJW8	181.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0124061_34	1524467.IV04_21470	109.0	1.89e-29	Phage tail tube protein	N/A
Pfam	UHGV-0124061_34	PF10618	N/A	N/A	Phage tail tube protein	Tail_tube
structural_annotation	UHGV-0124061_34	PF10618,TIGR02241,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0124061_36	phrog_8125	156.7	0	tail length tape measure protein	tail
UniRef90	UHGV-0124061_36	UniRef90_A0A6L6YME8	645.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0124061_36	1122135.KB893169_gene2496	171.0	9.10844e-44	phage tail tape measure protein	N/A
NCBIFam	UHGV-0124061_36	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0124061_36	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0124061_36	TIGR01760	N/A	N/A	N/A	N/A
PHROG	UHGV-0124061_37	phrog_184	293.5	0	DNA circularization	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0124061_37	UniRef90_A0A6L6YM41	387.0	0	DNA_circ_N domain-containing protein (Fragment)	N/A
eggNOG-mapper	UHGV-0124061_37	742821.HMPREF9464_01823	271.0	0	DNA circularisation protein N-terminus	N/A
Pfam	UHGV-0124061_37	PF07157	N/A	N/A	DNA circularisation protein N-terminus	DNA_circ_N
COG	UHGV-0124061_37	COG4228	N/A	N/A	Mu-like prophage DNA circulation protein	N/A
structural_annotation	UHGV-0124061_37	PF07157,TIGR01633,COG4228	N/A	N/A	N/A	N/A
PHROG	UHGV-0124061_39	phrog_177	263.4	0	tail protein	tail
UniRef90	UHGV-0124061_39	UniRef90_R7I5A6	209.0	0	Phage tail protein putative	N/A
eggNOG-mapper	UHGV-0124061_39	160488.PP_3863	187.0	0	tail protein	N/A
Pfam	UHGV-0124061_39	PF21683	N/A	N/A	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
COG	UHGV-0124061_39	COG4379	N/A	N/A	Mu-like prophage tail protein gpP	N/A
structural_annotation	UHGV-0124061_39	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-0124061_41	UniRef90_A0A3D3SHB9	275.0	0	Baseplate assembly protein (Fragment)	N/A
eggNOG-mapper	UHGV-0124061_41	42565.FP66_09895	128.0	3.71e-35	Bacteriophage Mu Gp45 protein	N/A
Pfam	UHGV-0124061_41	PF06890	N/A	N/A	Bacteriophage Mu Gp45 spike protein	Phage_Mu_Gp45
Pfam	UHGV-0124061_41	PF18715	N/A	N/A	Phage spike trimer	Phage_spike
NCBIFam	UHGV-0124061_41	TIGR01644.1	N/A	N/A	phage baseplate assembly protein V	N/A
COG	UHGV-0124061_41	COG4384	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0124061_41	PF06890,MF_00216,TIGR01644,COG4384	N/A	N/A	N/A	N/A
PHROG	UHGV-0124061_42	phrog_180	128.2	3.4e-38	tail protein	tail
UniRef90	UHGV-0124061_42	UniRef90_A0A8B6X3R6	119.0	8.58e-32	phage GP46 family protein	N/A
eggNOG-mapper	UHGV-0124061_42	742821.HMPREF9464_01818	118.0	2.9e-32	Phage protein GP46	N/A
Pfam	UHGV-0124061_42	PF07409	N/A	N/A	N/A	GP46
COG	UHGV-0124061_42	COG4381	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0124061_42	PF07409,COG4381	N/A	N/A	N/A	N/A
PHROG	UHGV-0124061_43	phrog_6	232.2	0	baseplate protein	tail
UniRef90	UHGV-0124061_43	UniRef90_UPI000F604B2E	378.0	0	baseplate J/gp47 family protein	N/A
eggNOG-mapper	UHGV-0124061_43	690850.Desaf_0706	284.0	0	Baseplate J-like protein	N/A
Pfam	UHGV-0124061_43	PF04865	N/A	N/A	Baseplate J-like protein	Baseplate_J
COG	UHGV-0124061_43	COG3299	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0124061_43	PF04865,PF21379,MF_04102,TIGR02243,COG3299	N/A	N/A	N/A	N/A
PHROG	UHGV-0124061_44	phrog_203	182.0	0	tail protein	tail
UniRef90	UHGV-0124061_44	UniRef90_A0A6L6YM70	376.0	0	N/A	N/A
eggNOG-mapper	UHGV-0124061_44	1268068.PG5_42230	125.0	1.54e-30	N/A	N/A
Pfam	UHGV-0124061_44	PF10076	N/A	N/A	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
COG	UHGV-0124061_44	COG3778	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0124061_44	PF10076,COG3778	N/A	N/A	N/A	N/A
PHROG	UHGV-0124061_45	phrog_19618	68.6	6.1e-20	tail collar protein	tail
UniRef90	UHGV-0124061_45	UniRef90_A0A6L6YMH3	414.0	0	Collar domain-containing protein	N/A
eggNOG-mapper	UHGV-0124061_45	556268.OFAG_00131	120.0	2.86e-29	Phage Tail Collar Domain	N/A
Pfam	UHGV-0124061_45	PF07484	N/A	N/A	Phage Tail Collar Domain	Collar
COG	UHGV-0124061_45	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0124061_45	PF07484,COG4675	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0124061_46	556268.OFAG_00131	72.4	0.00000000000908	Phage Tail Collar Domain	N/A
COG	UHGV-0124061_46	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-0124061_47	phrog_4912	171.5	0	tail fiber assembly	tail
UniRef90	UHGV-0124061_47	UniRef90_R5EDB9	342.0	0	Putative cell wall protein DAN4	N/A
eggNOG-mapper	UHGV-0124061_47	469610.HMPREF0189_01210	149.0	5.67946e-42	Phage tail assembly chaperone protein	N/A
Pfam	UHGV-0124061_47	PF16778	N/A	N/A	Phage tail assembly chaperone protein	Phage_tail_APC
structural_annotation	UHGV-0124061_47	PF16778	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0124061_48	PF14879,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0124061_49	469610.HMPREF0189_02346	52.8	0.000000406	N/A	N/A
structural_annotation	UHGV-0124061_49	PF17065	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0124061_50	PF00386,NF033147,COG4935	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0124061_51	PF17065,TIGR03511,COG1843	N/A	N/A	N/A	N/A
PHROG	UHGV-0124061_54	phrog_785	62.4	5.3e-18	holin	lysis
UniRef90	UHGV-0124061_54	UniRef90_UPI0007A0CC65	51.2	0.00000369	phage holin family protein	N/A
eggNOG-mapper	UHGV-0124061_54	742823.HMPREF9465_00919	105.0	2.85e-28	LydA holin phage, holin superfamily III	N/A
Pfam	UHGV-0124061_54	PF16083	N/A	N/A	LydA holin phage, holin superfamily III	Phage_holin_3_3
KOfam	UHGV-0124061_55	K08640	91.1	2.2e-26	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-0124061_55	phrog_894	86.7	3.3e-25	endolysin	lysis
UniRef90	UHGV-0124061_55	UniRef90_A0A3D4GBZ5	231.0	0	Peptidase_M15_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0124061_55	572547.Amico_1100	91.3	4.89e-22	Peptidase M15	N/A
Pfam	UHGV-0124061_55	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-0124061_55	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0124061_55	PF05951,COG3108	N/A	N/A	N/A	N/A
UniRef90	UHGV-0124061_57	UniRef90_UPI001C47BEFB	81.3	3.66e-19	anaerobic ribonucleoside-triphosphate reductase	N/A
eggNOG-mapper	UHGV-0124061_57	469610.HMPREF0189_02290	82.8	1.5e-20	Anaerobic ribonucleoside-triphosphate reductase	N/A
Pfam	UHGV-0124061_57	PF13597	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	NRDD
COG	UHGV-0124061_57	COG1328	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	N/A
UniRef90	UHGV-0124061_58	UniRef90_A0A6I3S820	2653.0	0	Type II-B CRISPR-associated RNA-guided endonuclease Cas9/Csx12	N/A
eggNOG-mapper	UHGV-0124061_58	762966.HMPREF9439_02317	2649.0	0	HNH endonuclease	N/A
PADLOC	UHGV-0124061_58	cas_csx12	397.8	0	CRISPR system subtype II-B RNA-guided endonuclease Cas9/Csx12	CRISPR-CAS
Pfam	UHGV-0124061_58	PF21069	N/A	N/A	CRISPR-associated endonuclease Cas9 alpha-helical lobe	Csx12
Pfam	UHGV-0124061_58	PF13395	N/A	N/A	HNH endonuclease	HNH_4
COG	UHGV-0124061_58	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A