UHGV-0124238 (vOTU-015352)

Viral Genome: UHGV-0124238

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0124238
vOTU ID	vOTU-015352
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_337438
Associated BioSample	SAMN00849584
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.53 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9789
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.05
Jumbo phage	No

Genome content
Genome length (bp)	32,191
GC content	36.99%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	42
CDS density	94%
Average CDS length (bps)	722.07
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 78.53)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0124238_1	PF10922	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0124238_2	PF17574	N/A	N/A	N/A	N/A
KOfam	UHGV-0124238_3	K03546	57.6	1.6e-16	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-0124238_3	phrog_1499	494.5	0	N/A	unknown function
UniRef90	UHGV-0124238_3	UniRef90_A0A1C6CT75	739.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-0124238_3	645991.Sgly_0320	541.0	0	domain protein	N/A
Pfam	UHGV-0124238_3	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-0124238_3	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-0124238_3	PF11398,MF_00365,TIGR00634,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-0124238_4	phrog_124	236.5	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0124238_4	UniRef90_A0A2N0UXR5	473.0	0	Phage nucleotide-binding protein	N/A
eggNOG-mapper	UHGV-0124238_4	645991.Sgly_0321	423.0	0	AAA domain	N/A
Pfam	UHGV-0124238_4	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0124238_4	PF13479,MF_00268,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0124238_5	phrog_2698	203.1	0	N/A	unknown function
UniRef90	UHGV-0124238_5	UniRef90_UPI001106D01D	194.0	0	N/A	N/A
eggNOG-mapper	UHGV-0124238_5	394503.Ccel_3308	177.0	0	N/A	N/A
structural_annotation	UHGV-0124238_5	PF05037	N/A	N/A	N/A	N/A
KOfam	UHGV-0124238_6	K17677	356.0	0	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	N/A
PHROG	UHGV-0124238_6	phrog_16	292.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0124238_6	UniRef90_A0A1C6CSB9	1034.0	0	Excinuclease ABC subunit B	N/A
eggNOG-mapper	UHGV-0124238_6	1235798.C817_03499	872.0	0	helicase superfamily c-terminal domain	N/A
PADLOC	UHGV-0124238_6	mREase_IV_00005	140.3	1.70006e-41	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0124238_6	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0124238_6	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0124238_6	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0124238_6	PF04851,PF16203,MF_01489,NF008521,COG1061	N/A	N/A	N/A	N/A
KOfam	UHGV-0124238_7	K07505	451.3	0	repA; regulatory protein RepA	N/A
PHROG	UHGV-0124238_7	phrog_2597	1239.7	0	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0124238_7	UniRef90_A0A1C6CSE0	1491.0	0	Regulatory protein repA	N/A
eggNOG-mapper	UHGV-0124238_7	1232449.BAHV02000008_gene621	1102.0	0	Primase C terminal 2 (PriCT-2)	N/A
Pfam	UHGV-0124238_7	PF08707	N/A	N/A	Primase C terminal 2 (PriCT-2)	PriCT_2
Pfam	UHGV-0124238_7	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0124238_7	COG3598	N/A	N/A	RecA-family ATPase	N/A
structural_annotation	UHGV-0124238_7	PF13481,PF16793,PF08220,MF_00350,MF_00700,NF006606,NF001641,COG3598,COG3285	N/A	N/A	N/A	N/A
KOfam	UHGV-0124238_8	K01160	43.7	0.0000000000082	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0124238_8	phrog_140	100.7	1.6e-29	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0124238_8	UniRef90_A0A1C6CSJ7	259.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0124238_8	478749.BRYFOR_07588	187.0	0	endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0124238_8	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0124238_8	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0124238_8	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0124238_11	phrog_36	60.0	3.7e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-0124238_11	UniRef90_A0A2K9P072	107.0	3.67e-27	RNA polymerase subunit sigma-24	N/A
eggNOG-mapper	UHGV-0124238_11	875454.BAEW01000002_gene486	82.0	3.59e-18	N/A	N/A
structural_annotation	UHGV-0124238_11	PF07374	N/A	N/A	N/A	N/A
PHROG	UHGV-0124238_12	phrog_309	170.8	0	terminase small subunit	head and packaging
UniRef90	UHGV-0124238_12	UniRef90_UPI000AC737F1	202.0	0	helix-turn-helix domain containing protein	N/A
eggNOG-mapper	UHGV-0124238_12	469618.FVAG_00793	157.0	0	transposase activity	N/A
COG	UHGV-0124238_12	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-0124238_12	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-0124238_13	K06909	374.0	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0124238_13	phrog_3717	164.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-0124238_13	UniRef90_F9MMJ8	434.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0124238_13	1000569.HMPREF1040_0200	434.0	0	Phage terminase, large subunit	N/A
Pfam	UHGV-0124238_13	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0124238_13	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0124238_13	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0124238_13	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0124238_13	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0124238_14	phrog_533	344.6	0	portal protein	head and packaging
UniRef90	UHGV-0124238_14	UniRef90_A0A6L5T8J5	376.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0124238_14	642492.Clole_0815	362.0	0	N/A	N/A
structural_annotation	UHGV-0124238_14	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0124238_16	phrog_8680	239.4	0	N/A	unknown function
UniRef90	UHGV-0124238_16	UniRef90_A0A416S3B0	244.0	0	N/A	N/A
eggNOG-mapper	UHGV-0124238_16	411470.RUMGNA_02208	221.0	0	N/A	N/A
Pfam	UHGV-0124238_16	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0124238_16	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0124238_17	phrog_9479	168.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0124238_17	511680.BUTYVIB_01226	60.1	0.000000000864	N/A	N/A
structural_annotation	UHGV-0124238_17	PF15529	N/A	N/A	N/A	N/A
PHROG	UHGV-0124238_19	phrog_581	159.6	0	minor head protein	head and packaging
UniRef90	UHGV-0124238_19	UniRef90_A0A1C6B625	177.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0124238_19	693746.OBV_18050	151.0	5.4e-38	Phage minor capsid protein 2	N/A
Pfam	UHGV-0124238_19	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0124238_19	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0124238_19	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0124238_20	phrog_194	60.8	3.3e-17	head scaffolding protein	head and packaging
UniRef90	UHGV-0124238_20	UniRef90_A0A174K280	55.5	0.00000668	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-0124238_20	883114.HMPREF9709_01195	57.4	0.000000175	Phage minor structural protein GP20	N/A
Pfam	UHGV-0124238_20	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0124238_21	phrog_422	230.7	0	major head protein	head and packaging
UniRef90	UHGV-0124238_21	UniRef90_A0A7X5KS43	426.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0124238_21	1430331.EP10_10365	353.0	0	N/A	N/A
structural_annotation	UHGV-0124238_21	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0124238_23	phrog_541	60.9	2.2e-17	head-tail adaptor	connector
PHROG	UHGV-0124238_24	phrog_3366	88.6	6.9e-26	N/A	unknown function
Pfam	UHGV-0124238_24	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0124238_24	PF20536	N/A	N/A	N/A	N/A
PHROG	UHGV-0124238_25	phrog_556	51.0	0.000000000000024	minor head protein	head and packaging
UniRef90	UHGV-0124238_25	UniRef90_UPI001B3C5A2B	90.1	4.25e-20	minor capsid protein	N/A
eggNOG-mapper	UHGV-0124238_25	665956.HMPREF1032_03062	63.9	0.0000000000689	Minor capsid protein	N/A
Pfam	UHGV-0124238_25	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0124238_25	PF11114	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0124238_26	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0124238_27	phrog_3099	45.1	0.0000000000016	N/A	unknown function
eggNOG-mapper	UHGV-0124238_27	665956.HMPREF1032_03060	99.8	5.18e-24	N/A	N/A
structural_annotation	UHGV-0124238_27	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0124238_28	phrog_11299	67.0	3.2e-19	N/A	unknown function
PHROG	UHGV-0124238_29	phrog_706	90.8	1.6e-26	N/A	unknown function
UniRef90	UHGV-0124238_29	UniRef90_UPI00164D7633	130.0	9.31e-35	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0124238_29	411459.RUMOBE_01383	137.0	2.49e-38	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0124238_29	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0124238_29	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0124238_30	phrog_1535	74.6	6.1e-31	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0124238_30	1120746.CCNL01000014_gene2105	108.0	3.42e-21	tape measure	N/A
COG	UHGV-0124238_30	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0124238_31	phrog_1194	70.0	2.9e-20	N/A	unknown function
eggNOG-mapper	UHGV-0124238_31	1232449.BAHV02000010_gene2724	117.0	3.6e-32	N/A	N/A
structural_annotation	UHGV-0124238_31	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0124238_32	phrog_13879	86.3	5.6e-26	N/A	unknown function
eggNOG-mapper	UHGV-0124238_32	1232449.BAHV02000010_gene2725	80.9	0.000000000000511	N/A	N/A
eggNOG-mapper	UHGV-0124238_33	411902.CLOBOL_00123	58.9	0.00000000354	N/A	N/A
UniRef90	UHGV-0124238_34	UniRef90_R6MQV2	399.0	0	Tail Collar domain protein	N/A
PHROG	UHGV-0124238_36	phrog_937	44.6	0.0000000000028	hemolysin	other
PHROG	UHGV-0124238_37	phrog_443	61.1	3.4e-17	holin	lysis
UniRef90	UHGV-0124238_37	UniRef90_UPI0009B98E42	92.8	1.75e-23	holin	N/A
eggNOG-mapper	UHGV-0124238_37	1235800.C819_01425	87.8	4.45e-22	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0124238_37	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0124238_37	PF16945	N/A	N/A	N/A	N/A
PHROG	UHGV-0124238_38	phrog_918	117.4	4.7e-35	N/A	unknown function
UniRef90	UHGV-0124238_38	UniRef90_UPI001CCDC3EB	128.0	6.45e-37	N/A	N/A
eggNOG-mapper	UHGV-0124238_38	1140001.I571_01827	122.0	2.16e-35	N/A	N/A
Pfam	UHGV-0124238_38	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0124238_38	PF19791	N/A	N/A	N/A	N/A
KOfam	UHGV-0124238_39	K01448	101.9	8.5e-30	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0124238_39	phrog_435	158.8	0	endolysin	lysis
UniRef90	UHGV-0124238_39	UniRef90_A0A1C6E2B1	471.0	0	Sporulation-specific N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0124238_39	272563.CD630_09720	199.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0124238_39	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0124238_39	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0124238_39	PF01520,PF18342,MF_00417,TIGR02883,COG0860,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0124238_40	phrog_10390	167.4	0	N/A	unknown function
UniRef90	UHGV-0124238_40	UniRef90_A0A415Z633	195.0	0	N/A	N/A
eggNOG-mapper	UHGV-0124238_40	679192.HMPREF9013_1310	181.0	0	N/A	N/A
Pfam	UHGV-0124238_40	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-0124238_40	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0124238_40	PF13274,COG3600	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0124238_41	1227268.HMPREF1552_00029	80.5	3.35e-17	N/A	N/A
Pfam	UHGV-0124238_42	PF20124	N/A	N/A	N/A	DUF6514
structural_annotation	UHGV-0124238_42	PF20124	N/A	N/A	N/A	N/A