UHGV-0125331 (vOTU-059901)

Viral Genome: UHGV-0125331

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0125331
vOTU ID	vOTU-059901
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_320138
Associated BioSample	N/A
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.54 (High-quality)
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	2
Recoded stop codon	No

Viral Content
geNomad score	0.9728
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	1
viralVerify prediction	Virus
viralVerify score	52.51
Jumbo phage	No

Genome content
Genome length (bp)	35,145
GC content	42.71%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	59
CDS density	95%
Average CDS length (bps)	564.97
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 90.54)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
AcrCatalog	UHGV-0125331_1	cluster_86620	65.9	6.92e-19	NA	N/A
KOfam	UHGV-0125331_2	K22300	62.4	1.1e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0125331_2	phrog_8	52.1	0.000000000000016	transcriptional regulator	transcription regulation
UniRef90	UHGV-0125331_2	UniRef90_R6NVH7	117.0	2.58e-33	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0125331_2	411470.RUMGNA_02090	86.7	6.98e-22	N/A	N/A
PADLOC	UHGV-0125331_2	retron_type_VI_hth_cluster2_1	41.4	0.000000000041	N/A	Retron
Pfam	UHGV-0125331_2	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-0125331_2	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0125331_4	K18830	50.8	0.000000000000041	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0125331_4	phrog_2967	49.3	0.000000000000082	transcriptional regulator	transcription regulation
UniRef90	UHGV-0125331_4	UniRef90_UPI000E48696E	230.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0125331_4	748224.HMPREF9436_01444	97.8	2.39e-24	N/A	N/A
PADLOC	UHGV-0125331_4	retron_type_VI_hth_cluster2_1	45.0	0.0000000000024	N/A	Retron
Pfam	UHGV-0125331_4	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0125331_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0125331_4	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0125331_7	PF07378,MF_00783,COG5443	N/A	N/A	N/A	N/A
PHROG	UHGV-0125331_12	phrog_3584	151.9	4.2039e-45	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0125331_12	1235800.C819_02258	259.0	0	N/A	N/A
structural_annotation	UHGV-0125331_12	PF21578,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-0125331_13	K03469	60.3	4.3e-17	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0125331_13	phrog_531	40.5	0.000000000036	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0125331_13	UniRef90_A0A416Z2U3	291.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0125331_13	1121015.N789_05115	70.1	0.000000000000427	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0125331_13	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0125331_13	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0125331_13	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0125331_14	phrog_7370	47.6	0.000000000000085	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0125331_14	UniRef90_UPI00164A90AD	137.0	9.94e-40	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0125331_14	1235800.C819_02254	106.0	3.6e-28	HNH nucleases	N/A
PHROG	UHGV-0125331_15	phrog_24368	66.3	5e-19	N/A	unknown function
eggNOG-mapper	UHGV-0125331_15	411902.CLOBOL_03886	57.0	0.0000000187	N/A	N/A
KOfam	UHGV-0125331_16	K19779	45.0	0.0000000000016	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	N/A
PHROG	UHGV-0125331_16	phrog_599	42.8	0.00000000001	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
Pfam	UHGV-0125331_16	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0125331_16	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0125331_16	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0125331_16	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-0125331_17	phrog_20593	79.7	2.6e-23	N/A	unknown function
PHROG	UHGV-0125331_18	phrog_2118	100.7	1.9e-29	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0125331_18	UniRef90_A0A352SFW0	253.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0125331_18	1235799.C818_02668	169.0	0	endonuclease activity	N/A
Pfam	UHGV-0125331_18	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0125331_18	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0125331_18	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0125331_19	phrog_1571	96.2	5.8e-31	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0125331_19	UniRef90_A0A1Q9J7B4	193.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-0125331_19	702438.HMPREF9431_00759	126.0	1.55e-36	HNH endonuclease	N/A
COG	UHGV-0125331_19	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0125331_19	NF008448	N/A	N/A	N/A	N/A
PHROG	UHGV-0125331_20	phrog_874	151.4	4.2039e-45	N/A	unknown function
UniRef90	UHGV-0125331_20	UniRef90_UPI0018F57B3A	241.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0125331_20	411468.CLOSCI_00298	162.0	0	N/A	N/A
structural_annotation	UHGV-0125331_20	PF04266,MF_00684,NF003443,COG4405	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0125331_22	1280698.AUJS01000007_gene1016	121.0	6.97e-33	N/A	N/A
PHROG	UHGV-0125331_23	phrog_4433	83.3	3.7e-27	N/A	unknown function
eggNOG-mapper	UHGV-0125331_23	1256908.HMPREF0373_02097	147.0	2.00946e-42	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0125331_23	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0125331_23	PF12120,NF000318	N/A	N/A	N/A	N/A
PHROG	UHGV-0125331_24	phrog_8470	213.4	0	N/A	unknown function
UniRef90	UHGV-0125331_24	UniRef90_UPI000E4BB21C	1409.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0125331_24	742733.HMPREF9469_00219	346.0	0	PcfJ-like protein	N/A
Pfam	UHGV-0125331_24	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0125331_24	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0125331_25	phrog_15077	106.0	6.6e-31	N/A	unknown function
UniRef90	UHGV-0125331_25	UniRef90_A0A3A6HZA9	166.0	3.8816e-43	N/A	N/A
eggNOG-mapper	UHGV-0125331_25	411902.CLOBOL_05696	179.0	0	N/A	N/A
structural_annotation	UHGV-0125331_25	PF11300,NF038070	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0125331_27	PF09889,COG4068	N/A	N/A	N/A	N/A
UniRef90	UHGV-0125331_28	UniRef90_UPI001D072F7E	83.6	9.66e-17	N/A	N/A
PHROG	UHGV-0125331_30	phrog_28876	83.2	2.3e-24	metal-dependent phosphohydrolase	other
UniRef90	UHGV-0125331_30	UniRef90_A0A843HIF4	185.0	0	HDIG domain-containing protein	N/A
eggNOG-mapper	UHGV-0125331_30	1235800.C819_00499	206.0	0	metal-dependent phosphohydrolase, HD sub domain	N/A
Pfam	UHGV-0125331_30	PF01966	N/A	N/A	HD domain	HD
COG	UHGV-0125331_30	COG3481	N/A	N/A	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	N/A
structural_annotation	UHGV-0125331_30	PF01966,MF_01427,NF010007,COG3481	N/A	N/A	N/A	N/A
COG	UHGV-0125331_31	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0125331_31	PF06530,TIGR02937,COG2739	N/A	N/A	N/A	N/A
KOfam	UHGV-0125331_32	K22299	49.0	0.00000000000014	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0125331_32	phrog_3	44.8	0.0000000000048	transcriptional repressor	transcription regulation
UniRef90	UHGV-0125331_32	UniRef90_R6P5B8	162.0	0	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0125331_32	1408321.JNJD01000010_gene1463	71.6	0.0000000000000381	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0125331_32	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0125331_32	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
PHROG	UHGV-0125331_33	phrog_12732	47.8	0.00000000000028	N/A	unknown function
PHROG	UHGV-0125331_36	phrog_309	96.2	2.9e-28	terminase small subunit	head and packaging
UniRef90	UHGV-0125331_36	UniRef90_A0A0A7RTX1	87.4	9.12e-19	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0125331_36	1567014.A0A0A7RTX1_9VIRU	87.4	1.53e-19	N/A	N/A
Pfam	UHGV-0125331_36	PF02796	N/A	N/A	Helix-turn-helix domain of resolvase	HTH_7
structural_annotation	UHGV-0125331_36	PF07141	N/A	N/A	N/A	N/A
PHROG	UHGV-0125331_37	phrog_5717	46.7	0.00000000000019	tail protein	tail
eggNOG-mapper	UHGV-0125331_37	500635.MITSMUL_03163	62.4	0.00000000345	Membrane	N/A
COG	UHGV-0125331_37	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-0125331_39	phrog_4105	75.9	4.3e-22	N/A	unknown function
eggNOG-mapper	UHGV-0125331_39	397288.C806_00056	172.0	0	N/A	N/A
PHROG	UHGV-0125331_40	phrog_443	64.3	3e-18	holin	lysis
UniRef90	UHGV-0125331_40	UniRef90_A0A315ZUA7	96.7	4.03e-24	Phage r1t holin	N/A
eggNOG-mapper	UHGV-0125331_40	626523.GCWU000342_01012	85.5	6.79e-21	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0125331_40	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0125331_40	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-0125331_41	K01448	118.2	9.5e-35	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0125331_41	phrog_435	187.2	0	endolysin	lysis
UniRef90	UHGV-0125331_41	UniRef90_R6NF86	563.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0125331_41	1256908.HMPREF0373_00462	187.0	0	Cell wall hydrolase autolysin	N/A
Pfam	UHGV-0125331_41	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0125331_41	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0125331_41	PF01520,PF18342,MF_00417,TIGR02883,COG0860,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-0125331_42	phrog_4581	114.7	6.2e-34	terminase small subunit	head and packaging
UniRef90	UHGV-0125331_42	UniRef90_R6NCD1	465.0	0	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0125331_42	1536769.P40081_01050	187.0	0	HNH nucleases	N/A
Pfam	UHGV-0125331_42	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0125331_42	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0125331_42	PF13671,MF_03171,NF005251,NF008448,COG4639	N/A	N/A	N/A	N/A
PHROG	UHGV-0125331_43	phrog_933	46.4	0.00000000000053	N/A	unknown function
PHROG	UHGV-0125331_45	phrog_9	269.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0125331_45	UniRef90_R7FEF5	836.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0125331_45	1211817.CCAT010000007_gene1040	529.0	0	Terminase	N/A
Pfam	UHGV-0125331_45	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0125331_45	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0125331_45	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0125331_45	PF20441,PF03354,MF_04145,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0125331_46	phrog_12	146.7	1.4013e-43	portal protein	head and packaging
UniRef90	UHGV-0125331_46	UniRef90_R6P552	795.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0125331_46	1157490.EL26_20720	317.0	0	Phage portal protein	N/A
Pfam	UHGV-0125331_46	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0125331_46	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0125331_46	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0125331_47	K06904	122.6	4e-36	N/A	N/A
PHROG	UHGV-0125331_47	phrog_80	142.1	4.90034e-42	head maturation protease	head and packaging
UniRef90	UHGV-0125331_47	UniRef90_R6PV53	365.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0125331_47	1123263.AUKY01000046_gene468	200.0	0	Phage prohead protease, HK97 family	N/A
Pfam	UHGV-0125331_47	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0125331_47	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0125331_47	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0125331_47	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0125331_48	phrog_10	160.8	0	major head protein	head and packaging
UniRef90	UHGV-0125331_48	UniRef90_R6NN39	796.0	0	Phage major capsid protein HK97 family	N/A
eggNOG-mapper	UHGV-0125331_48	411470.RUMGNA_02065	432.0	0	N/A	N/A
Pfam	UHGV-0125331_48	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0125331_48	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0125331_48	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0125331_48	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0125331_49	UniRef90_UPI001D07D95D	89.4	1.7e-21	phage head-tail connector protein	N/A
eggNOG-mapper	UHGV-0125331_49	768704.Desmer_4461	50.4	0.000000521	N/A	N/A
Pfam	UHGV-0125331_49	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-0125331_49	PF05135,TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0125331_50	phrog_25	41.9	0.000000000018	head closure Hc1	connector
UniRef90	UHGV-0125331_50	UniRef90_R6NQX3	231.0	0	Putative phage head-tail adaptor	N/A
eggNOG-mapper	UHGV-0125331_50	1536774.H70357_10645	60.5	0.000000000262	N/A	N/A
Pfam	UHGV-0125331_50	PF05521	N/A	N/A	Phage head-tail joining protein	Phage_H_T_join
structural_annotation	UHGV-0125331_50	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0125331_51	TIGR01725	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0125331_52	PF05657	N/A	N/A	N/A	N/A
PHROG	UHGV-0125331_53	phrog_88	97.9	1e-28	major tail protein	tail
UniRef90	UHGV-0125331_53	UniRef90_A0A5D4RFL7	80.1	0.00000000000000324	Phage tail protein	N/A
eggNOG-mapper	UHGV-0125331_53	1120971.AUCA01000066_gene599	62.0	0.00000000278	Phage tail tube protein	N/A
Pfam	UHGV-0125331_53	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-0125331_53	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0125331_53	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
KOfam	UHGV-0125331_56	K20282	43.3	0.00000000000062	GCC2; GRIP and coiled-coil domain-containing protein 2	N/A
PHROG	UHGV-0125331_56	phrog_5218	360.1	0	N/A	unknown function
UniRef90	UHGV-0125331_56	UniRef90_A0A1Y4GYF9	597.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0125331_56	999413.HMPREF1094_02001	396.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0125331_56	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0125331_56	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0125331_56	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0125331_57	phrog_36410	62.9	3.7e-18	N/A	unknown function
UniRef90	UHGV-0125331_57	UniRef90_UPI0004805F22	251.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0125331_57	1033737.CAEV01000029_gene285	130.0	2.51e-33	Phage tail protein	N/A
Pfam	UHGV-0125331_57	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-0125331_57	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0125331_57	PF20753,PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0125331_58	phrog_538	270.9	0	minor tail protein	tail
UniRef90	UHGV-0125331_58	UniRef90_UPI0004813F81	294.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0125331_58	742740.HMPREF9474_02260	266.0	0	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-0125331_58	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0125331_58	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0125331_59	phrog_1220	239.2	0	head protein	head and packaging
eggNOG-mapper	UHGV-0125331_59	588581.Cpap_1262	143.0	9.41e-37	COG NOG18825 non supervised orthologous group	N/A
structural_annotation	UHGV-0125331_59	PF20747	N/A	N/A	N/A	N/A