UHGV-0125407 (vOTU-127618)

Viral Genome: UHGV-0125407

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0125407
vOTU ID	vOTU-127618
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_311095
Associated BioSample	SAMEA37065418
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.2 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9793
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.21
Jumbo phage	No

Genome content
Genome length (bp)	37,773
GC content	41.47%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	61
CDS density	94%
Average CDS length (bps)	579.34
Total tRNA genes	0
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 82.2)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0125407_1	1200557.JHWV01000006_gene1736	49.3	0.000000857	N/A	N/A
PHROG	UHGV-0125407_2	phrog_1558	95.5	4.8e-28	N/A	unknown function
UniRef90	UHGV-0125407_2	UniRef90_A0A3E3DKZ5	348.0	0	MerR family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0125407_2	1235802.C823_01038	65.5	0.000000000162	N/A	N/A
PHROG	UHGV-0125407_3	phrog_5984	55.0	0.0000000000000016	N/A	unknown function
eggNOG-mapper	UHGV-0125407_3	1235798.C817_04575	85.5	7.59e-21	N/A	N/A
structural_annotation	UHGV-0125407_3	PF19561	N/A	N/A	N/A	N/A
PHROG	UHGV-0125407_9	phrog_23918	148.2	1.54143e-44	N/A	unknown function
eggNOG-mapper	UHGV-0125407_9	1235793.C809_02209	152.0	0	N/A	N/A
PHROG	UHGV-0125407_11	phrog_674	146.8	0	N/A	unknown function
UniRef90	UHGV-0125407_11	UniRef90_UPI00189DC10E	268.0	0	N/A	N/A
eggNOG-mapper	UHGV-0125407_11	742740.HMPREF9474_03487	140.0	6.69e-36	N/A	N/A
Pfam	UHGV-0125407_11	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0125407_11	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-0125407_12	K01160	49.1	0.00000000000014	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0125407_12	phrog_140	142.6	1.80067e-42	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0125407_12	UniRef90_A0A3S4ZHB9	212.0	0	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0125407_12	411459.RUMOBE_01038	136.0	4.03e-39	COG COG4570 Holliday junction resolvase	N/A
Pfam	UHGV-0125407_12	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0125407_12	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0125407_12	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0125407_14	K02315	185.6	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0125407_14	phrog_50	179.4	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0125407_14	UniRef90_C4ZCC4	550.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0125407_14	411459.RUMOBE_01035	248.0	0	N/A	N/A
Pfam	UHGV-0125407_14	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
NCBIFam	UHGV-0125407_14	NF005992.0	N/A	N/A	hypothetical protein	N/A
COG	UHGV-0125407_14	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0125407_14	PF01695,MF_01919,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0125407_15	phrog_5968	179.9	0	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0125407_15	UniRef90_C4ZCC5	499.0	0	Phage_rep_org_N domain-containing protein	N/A
eggNOG-mapper	UHGV-0125407_15	633135.C9WB95_9CAUD	178.0	0	calcium ion binding	N/A
Pfam	UHGV-0125407_15	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0125407_15	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
structural_annotation	UHGV-0125407_15	PF09681,TIGR01714,COG3756	N/A	N/A	N/A	N/A
PHROG	UHGV-0125407_16	phrog_1227	265.4	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0125407_16	UniRef90_C4ZCC6	508.0	0	N/A	N/A
eggNOG-mapper	UHGV-0125407_16	742733.HMPREF9469_01848	348.0	0	N/A	N/A
Pfam	UHGV-0125407_16	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-0125407_16	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0125407_16	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
KOfam	UHGV-0125407_17	K07455	191.3	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0125407_17	phrog_148	207.6	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0125407_17	UniRef90_A0A3E3DLQ9	583.0	0	Recombinase RecT	N/A
eggNOG-mapper	UHGV-0125407_17	1122947.FR7_2503	227.0	0	Recombinase, phage RecT family	N/A
Pfam	UHGV-0125407_17	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0125407_17	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0125407_17	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0125407_17	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-0125407_20	K01449	123.1	2.9e-36	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0125407_20	phrog_17417	74.8	1.2e-21	N/A	unknown function
UniRef90	UHGV-0125407_20	UniRef90_A0A6N2ZE51	388.0	0	Spore cortex-lytic enzyme	N/A
eggNOG-mapper	UHGV-0125407_20	742740.HMPREF9474_03111	201.0	0	Cell Wall Hydrolase	N/A
Pfam	UHGV-0125407_20	PF07486	N/A	N/A	Cell Wall Hydrolase	Hydrolase_2
COG	UHGV-0125407_20	COG3773	N/A	N/A	Cell wall hydrolase CwlJ, involved in spore germination	N/A
structural_annotation	UHGV-0125407_20	PF07486,TIGR02869,COG3773	N/A	N/A	N/A	N/A
PHROG	UHGV-0125407_21	phrog_6499	148.4	1.96182e-44	transcriptional regulator	transcription regulation
UniRef90	UHGV-0125407_21	UniRef90_C4ZCD2	320.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0125407_21	411459.RUMOBE_01025	152.0	8.40779e-45	sequence-specific DNA binding	N/A
Pfam	UHGV-0125407_21	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0125407_21	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0125407_21	PF06892,NF040522,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-0125407_22	phrog_1468	41.0	2.7e-20	transcriptional repressor	transcription regulation
UniRef90	UHGV-0125407_22	UniRef90_A0A3E3DL85	248.0	0	XRE family transcriptional regulator	N/A
Pfam	UHGV-0125407_22	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0125407_22	PF08279	N/A	N/A	HTH domain	HTH_11
structural_annotation	UHGV-0125407_22	PF12844,PF13744,MF_00535,TIGR00270,NF040507,COG1813,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0125407_23	K22300	66.6	5.2e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0125407_23	phrog_8	51.2	0.000000000000031	transcriptional regulator	transcription regulation
UniRef90	UHGV-0125407_23	UniRef90_A0A3E3DKQ6	236.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0125407_23	944564.HMPREF9200_1243	70.5	0.000000000000276	sequence-specific DNA binding	N/A
Pfam	UHGV-0125407_23	PF07022	N/A	N/A	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
COG	UHGV-0125407_23	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0125407_23	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0125407_25	K22300	43.0	0.0000000000092	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0125407_25	phrog_8	54.8	0.0000000000000026	transcriptional regulator	transcription regulation
UniRef90	UHGV-0125407_25	UniRef90_A0A3E3DKT0	179.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0125407_25	1123508.JH636441_gene3625	55.5	0.00000000524	sequence-specific DNA binding	N/A
Pfam	UHGV-0125407_25	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0125407_25	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
eggNOG-mapper	UHGV-0125407_26	1075090.GOAMR_64_00710	156.0	1.4013e-45	N/A	N/A
KOfam	UHGV-0125407_27	K14059	111.0	1.9e-32	int; integrase	N/A
PHROG	UHGV-0125407_27	phrog_1	137.7	1.10001e-40	integrase	integration and excision
UniRef90	UHGV-0125407_27	UniRef90_C4ZCD9	758.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0125407_27	411460.RUMTOR_02457	419.0	0	N/A	N/A
Pfam	UHGV-0125407_27	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0125407_27	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0125407_27	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0125407_28	K02395	48.7	0.000000000000093	flgJ; peptidoglycan hydrolase FlgJ	N/A
PHROG	UHGV-0125407_28	phrog_3513	57.2	1.9e-16	endolysin	lysis
UniRef90	UHGV-0125407_28	UniRef90_R5ZWS5	542.0	0	Peptidoglycan hydrolase	N/A
eggNOG-mapper	UHGV-0125407_28	1423724.BAMM01000042_gene2173	59.7	0.000000158	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
Pfam	UHGV-0125407_28	PF01832	N/A	N/A	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
Pfam	UHGV-0125407_28	PF08230	N/A	N/A	CW_7 repeat	CW_7
COG	UHGV-0125407_28	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
structural_annotation	UHGV-0125407_28	PF08230,NF004974,COG1705	N/A	N/A	N/A	N/A
PHROG	UHGV-0125407_29	phrog_199	73.1	3.5e-21	holin	lysis
UniRef90	UHGV-0125407_29	UniRef90_A0A3B8UJ75	240.0	0	Holin	N/A
eggNOG-mapper	UHGV-0125407_29	483218.BACPEC_01140	218.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0125407_29	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0125407_29	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0125407_29	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0125407_29	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-0125407_31	phrog_2566	45.8	0.00000000000096	N/A	unknown function
PHROG	UHGV-0125407_32	phrog_6616	164.3	0	tail protein	tail
UniRef90	UHGV-0125407_32	UniRef90_A0A8D9PGP3	757.0	0	Minor structural protein	N/A
eggNOG-mapper	UHGV-0125407_32	1499683.CCFF01000014_gene3896	271.0	0	Phage minor structural protein	N/A
COG	UHGV-0125407_32	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0125407_32	PF16466,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-0125407_33	phrog_1401	65.1	1.1e-18	N/A	unknown function
UniRef90	UHGV-0125407_33	UniRef90_UPI0007099B7A	68.2	0.00000000000485	N/A	N/A
eggNOG-mapper	UHGV-0125407_33	1294142.CINTURNW_1705	59.3	0.00000000216	N/A	N/A
structural_annotation	UHGV-0125407_33	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0125407_34	phrog_1194	82.4	4.7e-24	N/A	unknown function
eggNOG-mapper	UHGV-0125407_34	33035.JPJF01000093_gene2242	155.0	0	N/A	N/A
structural_annotation	UHGV-0125407_34	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0125407_35	phrog_1535	279.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0125407_35	UniRef90_A0A1C5PIN9	485.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0125407_35	33035.JPJF01000093_gene2243	347.0	0	phage tail tape measure protein	N/A
COG	UHGV-0125407_35	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0125407_35	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0125407_36	phrog_8355	115.9	8e-35	N/A	unknown function
UniRef90	UHGV-0125407_36	UniRef90_UPI0006BBA9AA	176.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0125407_36	394503.Ccel_3036	119.0	4.48e-33	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0125407_36	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0125407_36	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0125407_37	phrog_8300	65.1	1.1e-18	N/A	unknown function
eggNOG-mapper	UHGV-0125407_37	1151292.QEW_2425	54.7	0.0000000382	N/A	N/A
structural_annotation	UHGV-0125407_37	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0125407_38	phrog_820	116.9	1.2e-34	major tail protein	tail
UniRef90	UHGV-0125407_38	UniRef90_T3DDR1	178.0	0	Phage major tail 2 family protein	N/A
eggNOG-mapper	UHGV-0125407_38	1151292.QEW_2426	178.0	0	N/A	N/A
structural_annotation	UHGV-0125407_38	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0125407_39	phrog_2595	85.0	8.2e-25	head-tail connector protein	connector
UniRef90	UHGV-0125407_39	UniRef90_UPI00164BAA81	137.0	2.57e-39	minor capsid protein	N/A
eggNOG-mapper	UHGV-0125407_39	742740.HMPREF9474_03510	123.0	2.45e-34	N/A	N/A
Pfam	UHGV-0125407_39	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0125407_39	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0125407_40	phrog_556	60.1	3.5e-17	minor head protein	head and packaging
eggNOG-mapper	UHGV-0125407_40	483218.BACPEC_01151	143.0	2.22947e-42	N/A	N/A
PHROG	UHGV-0125407_41	phrog_8710	133.1	8.5e-40	N/A	unknown function
eggNOG-mapper	UHGV-0125407_41	742740.HMPREF9474_03508	125.0	4.98e-36	N/A	N/A
structural_annotation	UHGV-0125407_41	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0125407_42	phrog_541	69.2	6.3e-20	head-tail adaptor	connector
eggNOG-mapper	UHGV-0125407_42	1304866.K413DRAFT_0783	147.0	3.92364e-44	N/A	N/A
PHROG	UHGV-0125407_44	phrog_422	207.0	0	major head protein	head and packaging
UniRef90	UHGV-0125407_44	UniRef90_W0U896	209.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0125407_44	693746.OBV_18090	217.0	0	N/A	N/A
structural_annotation	UHGV-0125407_44	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0125407_45	phrog_2303	134.5	8.5e-40	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0125407_45	1304866.K413DRAFT_0806	138.0	3.54e-38	N/A	N/A
PHROG	UHGV-0125407_46	phrog_872	79.3	5.9e-23	N/A	unknown function
eggNOG-mapper	UHGV-0125407_46	397290.C810_05225	114.0	7.12e-31	N/A	N/A
dbAPIS	UHGV-0125407_46	APIS052	N/A	N/A	N/A	N/A
PHROG	UHGV-0125407_48	phrog_581	240.1	0	minor head protein	head and packaging
UniRef90	UHGV-0125407_48	UniRef90_A0A3D5LQU4	607.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-0125407_48	742740.HMPREF9474_03503	431.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0125407_48	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0125407_48	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0125407_48	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0125407_49	phrog_533	283.3	0	portal protein	head and packaging
UniRef90	UHGV-0125407_49	UniRef90_A0A413YU90	928.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0125407_49	33035.JPJF01000093_gene2257	543.0	0	N/A	N/A
structural_annotation	UHGV-0125407_49	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0125407_50	K06909	95.4	7.2e-28	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0125407_50	phrog_2	68.9	1.1e-19	terminase large subunit	head and packaging
UniRef90	UHGV-0125407_50	UniRef90_A0A413YU24	950.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0125407_50	1391647.AVSV01000003_gene1802	515.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0125407_50	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0125407_50	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0125407_50	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0125407_51	K07474	166.7	0	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0125407_51	phrog_51	167.3	0	terminase small subunit	head and packaging
UniRef90	UHGV-0125407_51	UniRef90_A0A413YU49	309.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0125407_51	1499683.CCFF01000014_gene3916	157.0	0	Terminase small subunit	N/A
Pfam	UHGV-0125407_51	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0125407_51	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0125407_51	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0125407_53	phrog_36	63.2	5.3e-18	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0125407_53	397290.C810_01391	102.0	1.32e-25	N/A	N/A
structural_annotation	UHGV-0125407_53	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0125407_54	phrog_625	67.4	1.1e-19	N/A	unknown function
UniRef90	UHGV-0125407_54	UniRef90_A0A413YU40	270.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0125407_54	397290.C810_01502	128.0	1.9e-36	N/A	N/A
structural_annotation	UHGV-0125407_54	PF12961,COG2028	N/A	N/A	N/A	N/A
UniRef90	UHGV-0125407_61	UniRef90_A0A3D5LBK9	53.1	0.0000000206	DNA methyltransferase (Fragment)	N/A
COG	UHGV-0125407_61	COG0270	N/A	N/A	DNA-cytosine methylase	N/A