UHGV-0125601 (vOTU-040097)

Viral Genome: UHGV-0125601

Genome Information

Genome (FASTA) Annotation track (GFF) Proteins (FASTA) Protein annotation (TSV)

Overview
UHGV ID	UHGV-0125601
vOTU ID	vOTU-040097
Representative Genome?	Yes
Source	GPD
Original genome ID	uvig_341495
Associated BioSample	SAMN02334002
Viral genome confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.6 (Medium-quality)
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral Content
geNomad score	0.9811
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.82
Jumbo phage	No

Genome content
Genome length (bp)	39,310
GC content	38.91%
Genetic code	The Standard Bacterial, Archaeal and Plant Plastid Code (11)
CDS genes	62
CDS density	83%
Average CDS length (bps)	529.26
Total tRNA genes	3
Suppressor tRNA genes	0

Genome content

Select to view: Genome Viewer Functional Annotation

Genome View (Completeness: 66.6)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0125601_1	phrog_806	41.1	0.00000000002	N/A	unknown function
Pfam	UHGV-0125601_1	PF11611	N/A	N/A	N/A	DUF4352
structural_annotation	UHGV-0125601_1	PF11611,MF_00791,NF003967,COG2967	N/A	N/A	N/A	N/A
UniRef90	UHGV-0125601_2	UniRef90_A0A349YRM6	61.6	0.00000000000994	XkdX family protein	N/A
eggNOG-mapper	UHGV-0125601_2	411468.CLOSCI_01507	53.1	0.0000000038	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-0125601_2	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-0125601_2	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-0125601_4	phrog_5302	313.8	0	tail protein	tail
UniRef90	UHGV-0125601_4	UniRef90_A0A345BPB9	276.0	0	Lectin	N/A
eggNOG-mapper	UHGV-0125601_4	428125.CLOLEP_01426	323.0	0	N/A	N/A
structural_annotation	UHGV-0125601_4	COG1262	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0125601_5	1121866.AUGK01000003_gene1445	72.4	0.00000000000114	N/A	N/A
Pfam	UHGV-0125601_5	PF11839	N/A	N/A	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
PHROG	UHGV-0125601_6	phrog_6616	499.8	0	tail protein	tail
UniRef90	UHGV-0125601_6	UniRef90_A0A412RR71	1018.0	0	Tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-0125601_6	476272.RUMHYD_01992	366.0	0	N/A	N/A
structural_annotation	UHGV-0125601_6	PF05113,NF033848,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0125601_7	phrog_1194	118.4	3.6e-35	N/A	unknown function
eggNOG-mapper	UHGV-0125601_7	1000588.HMPREF9965_1690	80.1	7.72e-18	N/A	N/A
Pfam	UHGV-0125601_7	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0125601_7	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0125601_8	phrog_1535	194.3	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0125601_8	397288.C806_03052	188.0	1.4013e-45	domain protein	N/A
COG	UHGV-0125601_8	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
KOfam	UHGV-0125601_9	K07273	154.5	1.4013e-45	acm; lysozyme	N/A
PHROG	UHGV-0125601_9	phrog_291	129.4	3.8e-38	endolysin	lysis
UniRef90	UHGV-0125601_9	UniRef90_A0A174GRH8	583.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0125601_9	1235800.C819_00458	231.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0125601_9	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0125601_9	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0125601_9	PF01183,PF01471,MF_01672,COG3757,COG3409	N/A	N/A	N/A	N/A
UniRef90	UHGV-0125601_12	UniRef90_R7BGF5	89.7	1.24e-19	Phage tail protein	N/A
structural_annotation	UHGV-0125601_12	PF16463,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0125601_13	PF05657	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0125601_14	1232453.BAIF02000058_gene1631	120.0	7.13e-32	N/A	N/A
AcrCatalog	UHGV-0125601_14	cluster_24841	152.0	0	NA	N/A
eggNOG-mapper	UHGV-0125601_15	1298920.KI911353_gene2656	61.6	0.000000000398	N/A	N/A
structural_annotation	UHGV-0125601_15	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0125601_16	phrog_1129	76.8	2e-22	holin	lysis
UniRef90	UHGV-0125601_16	UniRef90_A0A8D9UII9	162.0	0	Holin	N/A
eggNOG-mapper	UHGV-0125601_16	411461.DORFOR_00721	107.0	1.97e-29	N/A	N/A
Pfam	UHGV-0125601_16	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0125601_16	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0125601_17	phrog_1863	56.2	2.7e-16	N/A	unknown function
eggNOG-mapper	UHGV-0125601_17	1232452.BAIB02000007_gene1606	61.6	0.000000000168	N/A	N/A
eggNOG-mapper	UHGV-0125601_18	397290.C810_01402	62.8	0.0000000000493	N/A	N/A
UniRef90	UHGV-0125601_19	UniRef90_A0A8D9UIY7	63.9	0.0000000000128	Rho termination factor	N/A
structural_annotation	UHGV-0125601_19	PF21169	N/A	N/A	N/A	N/A
PHROG	UHGV-0125601_20	phrog_29	149.4	2.8026e-44	major head protein	head and packaging
UniRef90	UHGV-0125601_20	UniRef90_A0A412RQU1	659.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0125601_20	1296659.S5MNB6_9CAUD	168.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0125601_20	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0125601_20	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0125601_21	phrog_909	79.2	4.2e-23	major head protein	head and packaging
UniRef90	UHGV-0125601_21	UniRef90_R7BGI8	192.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0125601_21	1078085.HMPREF1210_01145	60.8	0.00000000017	N/A	N/A
PHROG	UHGV-0125601_23	phrog_2662	57.3	2.1e-16	portal protein	head and packaging
UniRef90	UHGV-0125601_23	UniRef90_A0A412RR50	282.0	0	Phage_Mu_F domain-containing protein	N/A
Pfam	UHGV-0125601_23	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0125601_23	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0125601_23	PF04233,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0125601_24	phrog_64	149.8	1.4013e-44	portal protein	head and packaging
UniRef90	UHGV-0125601_24	UniRef90_A0A412RQZ0	812.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0125601_24	1232453.BAIF02000058_gene1625	345.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0125601_24	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0125601_24	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0125601_25	phrog_36	55.4	0.0000000000000014	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0125601_25	397290.C810_01391	173.0	0	N/A	N/A
structural_annotation	UHGV-0125601_25	PF02996	N/A	N/A	N/A	N/A
PHROG	UHGV-0125601_26	phrog_38	150.7	9.80909e-45	terminase large subunit	head and packaging
UniRef90	UHGV-0125601_26	UniRef90_UPI001D009E65	979.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0125601_26	1121866.AUGK01000003_gene1428	223.0	0	chromosome segregation	N/A
NCBIFam	UHGV-0125601_26	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0125601_26	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0125601_26	PF17289,PF05876,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
UniRef90	UHGV-0125601_27	UniRef90_UPI00038D30C0	189.0	0	N/A	N/A
UniRef90	UHGV-0125601_28	UniRef90_UPI0011072322	73.2	0.0000000000000216	N/A	N/A
eggNOG-mapper	UHGV-0125601_28	1256908.HMPREF0373_00479	73.2	0.00000000000000335	N/A	N/A
structural_annotation	UHGV-0125601_28	PF14359,COG3613	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0125601_29	1232453.BAIF02000011_gene3355	49.3	0.0000069	N/A	N/A
UniRef90	UHGV-0125601_32	UniRef90_A0A8D9PGW1	57.4	0.00000000149	HTH psq-type domain-containing protein	N/A
structural_annotation	UHGV-0125601_32	PF05225,COG2886	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0125601_33	1397699.JNIS01000001_gene2447	107.0	3.01e-24	Conserved phage C-terminus (Phg_2220_C)	N/A
structural_annotation	UHGV-0125601_33	PF07106,NF040642,COG3355	N/A	N/A	N/A	N/A
PHROG	UHGV-0125601_35	phrog_236	50.5	0.000000000000047	nucleotide kinase	other
UniRef90	UHGV-0125601_35	UniRef90_A0A412RQV8	247.0	0	N/A	N/A
eggNOG-mapper	UHGV-0125601_35	1200557.JHWV01000001_gene285	68.6	0.00000000000574	N/A	N/A
Pfam	UHGV-0125601_35	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-0125601_35	PF11753	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0125601_37	658655.HMPREF0988_00895	103.0	2.6e-25	N/A	N/A
PHROG	UHGV-0125601_43	phrog_13890	44.7	0.0000000000016	N/A	unknown function
structural_annotation	UHGV-0125601_45	PF18267	N/A	N/A	N/A	N/A
PHROG	UHGV-0125601_51	phrog_1233	50.6	0.000000000000036	N/A	unknown function
eggNOG-mapper	UHGV-0125601_51	658655.HMPREF0988_00914	88.2	2.89e-21	N/A	N/A
eggNOG-mapper	UHGV-0125601_52	658655.HMPREF0988_00915	88.2	4.83e-19	N/A	N/A
PHROG	UHGV-0125601_53	phrog_20016	159.5	0	N/A	unknown function
UniRef90	UHGV-0125601_53	UniRef90_A0A345BPX4	126.0	1.08e-34	Carbohydrate binding domain/collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-0125601_53	1235790.C805_00062	165.0	0	N/A	N/A
structural_annotation	UHGV-0125601_53	PF18573,NF033147	N/A	N/A	N/A	N/A
KOfam	UHGV-0125601_54	K07741	68.2	2.8e-19	antB; anti-repressor protein	N/A
PHROG	UHGV-0125601_54	phrog_373	92.8	4.7e-27	anti-repressor	transcription regulation
UniRef90	UHGV-0125601_54	UniRef90_A0A416G2X7	278.0	0	AntA domain-containing protein	N/A
eggNOG-mapper	UHGV-0125601_54	552396.HMPREF0863_00756	191.0	0	P22_AR N-terminal domain	N/A
Pfam	UHGV-0125601_54	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
COG	UHGV-0125601_54	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0125601_54	PF10552,PF08346,NF008573,COG3561	N/A	N/A	N/A	N/A
UniRef90	UHGV-0125601_56	UniRef90_A0A1C5WHU9	53.9	0.0000000256	Ribbon-helix-helix protein, copG family	N/A
eggNOG-mapper	UHGV-0125601_56	1395587.P364_0115835	51.2	0.0000000499	N/A	N/A
structural_annotation	UHGV-0125601_56	PF01402,NF041793,COG3905	N/A	N/A	N/A	N/A
PHROG	UHGV-0125601_57	phrog_16490	171.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0125601_57	397290.C810_01328	202.0	0	N/A	N/A
eggNOG-mapper	UHGV-0125601_58	658655.HMPREF0988_00918	89.7	9.18e-23	N/A	N/A
PHROG	UHGV-0125601_59	phrog_21718	44.0	0.0000000000035	N/A	unknown function
eggNOG-mapper	UHGV-0125601_59	658655.HMPREF0988_00919	105.0	1.71e-26	N/A	N/A
structural_annotation	UHGV-0125601_59	NF033819	N/A	N/A	N/A	N/A
PHROG	UHGV-0125601_61	phrog_31631	46.5	0.00000000000051	N/A	unknown function
PHROG	UHGV-0125601_62	phrog_66	45.5	0.000000000002	excisionase and transcriptional regulator	integration and excision
UniRef90	UHGV-0125601_62	UniRef90_A0A414ZM74	265.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0125601_62	1196322.A370_02663	126.0	2.96e-35	Helix-turn-helix domain	N/A
Pfam	UHGV-0125601_62	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
NCBIFam	UHGV-0125601_62	TIGR01764.1	N/A	N/A	excisionase family DNA-binding protein	N/A